Incidental Mutation 'IGL00953:Vmn1r220'
ID 28880
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn1r220
Ensembl Gene ENSMUSG00000096099
Gene Name vomeronasal 1 receptor 220
Synonyms V1rh12
Accession Numbers
Essential gene? Probably non essential (E-score: 0.127) question?
Stock # IGL00953
Quality Score
Status
Chromosome 13
Chromosomal Location 23367798-23368694 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 23367935 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Isoleucine at position 254 (F254I)
Ref Sequence ENSEMBL: ENSMUSP00000154302 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072385] [ENSMUST00000226651] [ENSMUST00000227679] [ENSMUST00000227950] [ENSMUST00000228239] [ENSMUST00000228854]
AlphaFold Q8R272
Predicted Effect probably benign
Transcript: ENSMUST00000072385
AA Change: F254I

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000072222
Gene: ENSMUSG00000096099
AA Change: F254I

DomainStartEndE-ValueType
Pfam:V1R 33 297 5e-38 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226651
AA Change: F254I

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000227679
AA Change: F254I

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000227950
AA Change: F254I

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000228239
AA Change: F254I

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000228854
AA Change: F254I

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 34 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aatk T C 11: 119,902,047 (GRCm39) E726G probably benign Het
Cdyl2 T A 8: 117,321,928 (GRCm39) probably benign Het
Cep41 T C 6: 30,660,966 (GRCm39) T109A probably benign Het
Clca3b C T 3: 144,552,972 (GRCm39) W84* probably null Het
Cyp27b1 A G 10: 126,885,551 (GRCm39) D130G probably benign Het
Cyp2f2 T C 7: 26,829,242 (GRCm39) V249A possibly damaging Het
Cyth3 G A 5: 143,692,920 (GRCm39) probably null Het
Dnah8 G T 17: 30,925,431 (GRCm39) E1289* probably null Het
Fam171a1 A T 2: 3,179,327 (GRCm39) D51V possibly damaging Het
Farp2 A G 1: 93,488,896 (GRCm39) R107G possibly damaging Het
Gemin6 T C 17: 80,535,294 (GRCm39) F85L possibly damaging Het
Hivep3 A C 4: 119,955,571 (GRCm39) T1296P probably damaging Het
Hnrnpm C A 17: 33,868,876 (GRCm39) R517L probably damaging Het
Htt T A 5: 34,976,021 (GRCm39) S670T probably benign Het
Klhl24 A T 16: 19,941,717 (GRCm39) N555I possibly damaging Het
Limd1 T A 9: 123,308,948 (GRCm39) S216T probably benign Het
Lmf2 A T 15: 89,238,102 (GRCm39) I234N probably damaging Het
Mrpl4 C A 9: 20,919,863 (GRCm39) D271E probably benign Het
Mydgf C T 17: 56,486,407 (GRCm39) G75R probably damaging Het
Nat1 A G 8: 67,943,630 (GRCm39) D5G possibly damaging Het
Or2t46 T C 11: 58,472,636 (GRCm39) V322A probably benign Het
Or5h22 A T 16: 58,895,052 (GRCm39) Y130* probably null Het
Or5k15 A C 16: 58,710,048 (GRCm39) H178Q probably damaging Het
Pla2g4c T A 7: 13,077,951 (GRCm39) M363K probably benign Het
Prex1 A G 2: 166,480,329 (GRCm39) F137S probably damaging Het
Rbm12b1 A G 4: 12,146,038 (GRCm39) D670G probably damaging Het
Rrp12 C A 19: 41,860,231 (GRCm39) M997I possibly damaging Het
Scn3a A G 2: 65,327,736 (GRCm39) V918A probably benign Het
Slc35g2 A G 9: 100,434,516 (GRCm39) V385A probably damaging Het
Slit1 A T 19: 41,590,739 (GRCm39) I1311N probably damaging Het
Ube2j2 C T 4: 156,030,834 (GRCm39) probably benign Het
Ucp2 A G 7: 100,147,629 (GRCm39) T203A probably benign Het
Upk1b C T 16: 38,600,347 (GRCm39) G211D possibly damaging Het
Zcchc4 T C 5: 52,965,638 (GRCm39) F314S probably damaging Het
Other mutations in Vmn1r220
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00870:Vmn1r220 APN 13 23,368,647 (GRCm39) missense probably null 0.01
IGL00972:Vmn1r220 APN 13 23,368,558 (GRCm39) missense probably damaging 1.00
IGL01511:Vmn1r220 APN 13 23,368,384 (GRCm39) missense probably damaging 1.00
IGL02967:Vmn1r220 APN 13 23,368,162 (GRCm39) missense probably damaging 0.97
IGL03040:Vmn1r220 APN 13 23,367,952 (GRCm39) missense possibly damaging 0.92
R1226:Vmn1r220 UTSW 13 23,368,294 (GRCm39) missense probably damaging 1.00
R1869:Vmn1r220 UTSW 13 23,368,457 (GRCm39) missense probably damaging 1.00
R2312:Vmn1r220 UTSW 13 23,368,147 (GRCm39) missense probably damaging 1.00
R4223:Vmn1r220 UTSW 13 23,368,148 (GRCm39) missense probably benign 0.22
R5655:Vmn1r220 UTSW 13 23,368,298 (GRCm39) missense probably benign 0.03
R6188:Vmn1r220 UTSW 13 23,368,084 (GRCm39) missense probably damaging 1.00
R6276:Vmn1r220 UTSW 13 23,368,465 (GRCm39) missense probably damaging 1.00
R7756:Vmn1r220 UTSW 13 23,367,877 (GRCm39) missense probably benign 0.25
R8275:Vmn1r220 UTSW 13 23,368,483 (GRCm39) nonsense probably null
R8867:Vmn1r220 UTSW 13 23,368,271 (GRCm39) missense probably benign 0.22
R8981:Vmn1r220 UTSW 13 23,368,423 (GRCm39) missense probably damaging 1.00
R9218:Vmn1r220 UTSW 13 23,368,609 (GRCm39) missense probably benign 0.10
R9278:Vmn1r220 UTSW 13 23,368,258 (GRCm39) missense possibly damaging 0.79
Posted On 2013-04-17