Incidental Mutation 'IGL02349:Scyl2'
| ID |
289446 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Scyl2
|
| Ensembl Gene |
ENSMUSG00000069539 |
| Gene Name |
SCY1-like 2 (S. cerevisiae) |
| Synonyms |
D10Ertd802e, CVAK104 |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.241)
|
| Stock # |
IGL02349
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
10 |
| Chromosomal Location |
89474583-89522147 bp(-) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
A to T
at 89493800 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000134366
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000092227]
[ENSMUST00000174252]
[ENSMUST00000174492]
|
| AlphaFold |
Q8CFE4 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000092227
|
| SMART Domains |
Protein: ENSMUSP00000089874
Gene: ENSMUSG00000069539
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Pkinase_Tyr
|
32 |
324 |
9.7e-15 |
PFAM |
|
Pfam:Pkinase
|
32 |
327 |
4.6e-24 |
PFAM |
|
low complexity region
|
356 |
369 |
N/A |
INTRINSIC |
|
low complexity region
|
679 |
704 |
N/A |
INTRINSIC |
|
low complexity region
|
896 |
921 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000105294
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000173526
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174252
|
| SMART Domains |
Protein: ENSMUSP00000133992
Gene: ENSMUSG00000069539
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Pkinase_Tyr
|
32 |
324 |
6.4e-15 |
PFAM |
|
Pfam:Pkinase
|
32 |
327 |
2.9e-26 |
PFAM |
|
low complexity region
|
356 |
369 |
N/A |
INTRINSIC |
|
low complexity region
|
680 |
705 |
N/A |
INTRINSIC |
|
low complexity region
|
897 |
922 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174492
|
| SMART Domains |
Protein: ENSMUSP00000134366
Gene: ENSMUSG00000069539
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1b3ua_
|
66 |
259 |
1e-7 |
SMART |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene associates with clathrin-coated complexes at the plasma membrane and with endocytic coated vesicles. The encoded protein phosphorylates the beta2 subunit of the plasma membrane adapter complex AP2 and interacts with clathrin, showing involvement in clathrin-dependent pathways between the trans-Golgi network and the endosomal system. In addition, this protein has a role in the Wnt signaling pathway by targeting frizzled 5 (Fzd5) for lysosomal degradation. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Dec 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit neonatal lethality, absent gastric milk in neonates, postnatal growth retardation, sensory-motor deficits and limb grapsing. Mice homozygous for a conditional allele exhibit similar phenotypes with near complete loss of CA3 neurons. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 50 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcb8 |
A |
G |
5: 24,611,462 (GRCm39) |
I484V |
probably benign |
Het |
| Acly |
C |
T |
11: 100,410,505 (GRCm39) |
E158K |
probably benign |
Het |
| Akap3 |
T |
A |
6: 126,837,226 (GRCm39) |
D3E |
probably benign |
Het |
| Alg8 |
A |
G |
7: 97,029,101 (GRCm39) |
N152S |
possibly damaging |
Het |
| Ano7 |
A |
G |
1: 93,319,212 (GRCm39) |
T323A |
probably benign |
Het |
| Bmp1 |
T |
C |
14: 70,744,989 (GRCm39) |
Y252C |
possibly damaging |
Het |
| Cacnb3 |
A |
T |
15: 98,538,842 (GRCm39) |
K159* |
probably null |
Het |
| Capns2 |
T |
A |
8: 93,628,690 (GRCm39) |
V193D |
probably benign |
Het |
| Cct2 |
A |
G |
10: 116,889,044 (GRCm39) |
I48T |
probably benign |
Het |
| Cep152 |
A |
G |
2: 125,436,876 (GRCm39) |
S555P |
probably damaging |
Het |
| Col5a3 |
T |
C |
9: 20,683,657 (GRCm39) |
E1533G |
unknown |
Het |
| Cyp17a1 |
A |
G |
19: 46,655,936 (GRCm39) |
L451P |
probably damaging |
Het |
| Dgcr8 |
T |
C |
16: 18,098,170 (GRCm39) |
E407G |
possibly damaging |
Het |
| Dhx57 |
T |
A |
17: 80,563,000 (GRCm39) |
N876Y |
probably damaging |
Het |
| Dnah7b |
T |
A |
1: 46,138,663 (GRCm39) |
L235* |
probably null |
Het |
| Fgfr2 |
A |
G |
7: 129,844,336 (GRCm39) |
Y50H |
probably damaging |
Het |
| Gars1 |
T |
A |
6: 55,025,049 (GRCm39) |
|
probably benign |
Het |
| Gfpt2 |
A |
T |
11: 49,698,530 (GRCm39) |
I42F |
probably benign |
Het |
| Glcci1 |
A |
G |
6: 8,558,581 (GRCm39) |
K35E |
probably damaging |
Het |
| Gpatch1 |
T |
A |
7: 35,006,680 (GRCm39) |
M163L |
probably damaging |
Het |
| Gpr132 |
T |
C |
12: 112,816,475 (GRCm39) |
Y117C |
probably damaging |
Het |
| Ints1 |
G |
A |
5: 139,754,223 (GRCm39) |
P650S |
probably damaging |
Het |
| Itga2b |
T |
C |
11: 102,352,189 (GRCm39) |
D464G |
probably damaging |
Het |
| Kansl2 |
C |
A |
15: 98,427,327 (GRCm39) |
G185C |
probably damaging |
Het |
| Kat6b |
T |
A |
14: 21,687,661 (GRCm39) |
M570K |
probably damaging |
Het |
| Macir |
A |
G |
1: 97,573,777 (GRCm39) |
L96P |
probably damaging |
Het |
| Map3k19 |
T |
A |
1: 127,751,506 (GRCm39) |
D615V |
possibly damaging |
Het |
| Map3k7cl |
A |
G |
16: 87,352,901 (GRCm39) |
|
probably benign |
Het |
| Msto1 |
A |
C |
3: 88,818,205 (GRCm39) |
S360R |
possibly damaging |
Het |
| Myo15b |
C |
A |
11: 115,753,931 (GRCm39) |
|
probably benign |
Het |
| Nhlrc2 |
T |
C |
19: 56,580,151 (GRCm39) |
V428A |
possibly damaging |
Het |
| Or13a28 |
T |
C |
7: 140,218,384 (GRCm39) |
F257L |
probably benign |
Het |
| Or1j19 |
A |
C |
2: 36,677,058 (GRCm39) |
T174P |
possibly damaging |
Het |
| Or51a39 |
G |
A |
7: 102,363,333 (GRCm39) |
R96C |
probably damaging |
Het |
| Or51f2 |
A |
T |
7: 102,527,116 (GRCm39) |
Y263F |
probably benign |
Het |
| Or5p51 |
A |
G |
7: 107,444,812 (GRCm39) |
S43P |
probably benign |
Het |
| Or8b12 |
T |
A |
9: 37,657,502 (GRCm39) |
M24K |
probably benign |
Het |
| Pcm1 |
G |
T |
8: 41,741,192 (GRCm39) |
|
probably null |
Het |
| Plekhg3 |
A |
T |
12: 76,609,074 (GRCm39) |
N149I |
probably damaging |
Het |
| Rbp3 |
C |
A |
14: 33,677,676 (GRCm39) |
H541Q |
probably damaging |
Het |
| Rgp1 |
T |
C |
4: 43,581,236 (GRCm39) |
|
probably null |
Het |
| Tas2r144 |
A |
C |
6: 42,193,010 (GRCm39) |
H250P |
probably benign |
Het |
| Tmppe |
T |
C |
9: 114,234,268 (GRCm39) |
V189A |
probably benign |
Het |
| Trp53bp1 |
G |
A |
2: 121,029,555 (GRCm39) |
S1875L |
probably damaging |
Het |
| Txnl4a |
T |
A |
18: 80,261,944 (GRCm39) |
L60H |
probably damaging |
Het |
| Upp2 |
A |
G |
2: 58,667,898 (GRCm39) |
D217G |
probably benign |
Het |
| Vmn2r74 |
A |
G |
7: 85,601,724 (GRCm39) |
L638P |
probably damaging |
Het |
| Vnn1 |
A |
G |
10: 23,774,401 (GRCm39) |
N148S |
possibly damaging |
Het |
| Xrcc1 |
C |
T |
7: 24,266,467 (GRCm39) |
Q241* |
probably null |
Het |
| Zfp990 |
A |
G |
4: 145,257,447 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Scyl2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00567:Scyl2
|
APN |
10 |
89,493,671 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL01141:Scyl2
|
APN |
10 |
89,476,497 (GRCm39) |
missense |
probably benign |
|
|
IGL01597:Scyl2
|
APN |
10 |
89,488,849 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01713:Scyl2
|
APN |
10 |
89,490,087 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02466:Scyl2
|
APN |
10 |
89,488,871 (GRCm39) |
nonsense |
probably null |
|
|
IGL02511:Scyl2
|
APN |
10 |
89,476,681 (GRCm39) |
missense |
probably benign |
|
|
IGL02949:Scyl2
|
APN |
10 |
89,496,163 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
IGL03087:Scyl2
|
APN |
10 |
89,488,830 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
IGL03117:Scyl2
|
APN |
10 |
89,493,729 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
IGL03228:Scyl2
|
APN |
10 |
89,485,942 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0019:Scyl2
|
UTSW |
10 |
89,495,183 (GRCm39) |
missense |
probably benign |
0.44 |
|
R0827:Scyl2
|
UTSW |
10 |
89,493,727 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R1394:Scyl2
|
UTSW |
10 |
89,476,827 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R1460:Scyl2
|
UTSW |
10 |
89,493,751 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R1572:Scyl2
|
UTSW |
10 |
89,486,818 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1624:Scyl2
|
UTSW |
10 |
89,476,598 (GRCm39) |
missense |
probably benign |
0.19 |
|
R1909:Scyl2
|
UTSW |
10 |
89,476,767 (GRCm39) |
missense |
probably benign |
0.01 |
|
R3846:Scyl2
|
UTSW |
10 |
89,476,403 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4041:Scyl2
|
UTSW |
10 |
89,485,914 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4077:Scyl2
|
UTSW |
10 |
89,476,458 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4079:Scyl2
|
UTSW |
10 |
89,476,458 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4765:Scyl2
|
UTSW |
10 |
89,495,160 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4855:Scyl2
|
UTSW |
10 |
89,476,325 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5308:Scyl2
|
UTSW |
10 |
89,477,869 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5894:Scyl2
|
UTSW |
10 |
89,476,681 (GRCm39) |
missense |
probably benign |
|
|
R5901:Scyl2
|
UTSW |
10 |
89,496,124 (GRCm39) |
missense |
probably benign |
0.03 |
|
R6048:Scyl2
|
UTSW |
10 |
89,481,348 (GRCm39) |
missense |
probably benign |
0.33 |
|
R6249:Scyl2
|
UTSW |
10 |
89,493,719 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6658:Scyl2
|
UTSW |
10 |
89,476,835 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6827:Scyl2
|
UTSW |
10 |
89,505,666 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R6909:Scyl2
|
UTSW |
10 |
89,481,604 (GRCm39) |
missense |
probably benign |
0.28 |
|
R7027:Scyl2
|
UTSW |
10 |
89,481,323 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7095:Scyl2
|
UTSW |
10 |
89,505,549 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8062:Scyl2
|
UTSW |
10 |
89,490,022 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R8095:Scyl2
|
UTSW |
10 |
89,476,965 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8197:Scyl2
|
UTSW |
10 |
89,498,228 (GRCm39) |
missense |
probably benign |
0.33 |
|
R8232:Scyl2
|
UTSW |
10 |
89,498,309 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8241:Scyl2
|
UTSW |
10 |
89,489,971 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R8263:Scyl2
|
UTSW |
10 |
89,476,525 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
R9020:Scyl2
|
UTSW |
10 |
89,488,858 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9748:Scyl2
|
UTSW |
10 |
89,476,794 (GRCm39) |
missense |
probably benign |
0.11 |
|
Z1177:Scyl2
|
UTSW |
10 |
89,505,577 (GRCm39) |
frame shift |
probably null |
|
|
| Posted On |
2015-04-16 |
Incidental Mutation