Incidental Mutation 'IGL02403:C9orf72'
ID |
291985 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
C9orf72
|
Ensembl Gene |
ENSMUSG00000028300 |
Gene Name |
C9orf72, member of C9orf72-SMCR8 complex |
Synonyms |
Dennd9, 3110043O21Rik |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL02403
|
Quality Score |
|
Status
|
|
Chromosome |
4 |
Chromosomal Location |
35191285-35226153 bp(-) (GRCm39) |
Type of Mutation |
splice site |
DNA Base Change (assembly) |
A to G
at 35205887 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000103762
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000084724]
[ENSMUST00000108126]
[ENSMUST00000108127]
|
AlphaFold |
no structure available at present |
Predicted Effect |
probably benign
Transcript: ENSMUST00000084724
|
SMART Domains |
Protein: ENSMUSP00000081775 Gene: ENSMUSG00000028300
Domain | Start | End | E-Value | Type |
Pfam:C9orf72-like
|
60 |
325 |
6.8e-90 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000108126
|
SMART Domains |
Protein: ENSMUSP00000103761 Gene: ENSMUSG00000028300
Domain | Start | End | E-Value | Type |
Pfam:C9orf72-like
|
1 |
161 |
2e-56 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000108127
|
SMART Domains |
Protein: ENSMUSP00000103762 Gene: ENSMUSG00000028300
Domain | Start | End | E-Value | Type |
Pfam:C9orf72-like
|
61 |
324 |
1.9e-99 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000121722
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000142628
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene plays an important role in the regulation of endosomal trafficking, and has been shown to interact with Rab proteins that are involved in autophagy and endocytic transport. Expansion of a GGGGCC repeat from 2-22 copies to 700-1600 copies in the intronic sequence between alternate 5' exons in transcripts from this gene is associated with 9p-linked ALS (amyotrophic lateral sclerosis) and FTD (frontotemporal dementia) (PMID: 21944778, 21944779). Studies suggest that hexanucleotide expansions could result in the selective stabilization of repeat-containing pre-mRNA, and the accumulation of insoluble dipeptide repeat protein aggregates that could be pathogenic in FTD-ALS patients (PMID: 23393093). Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2016] PHENOTYPE: Nullizygous mice show splenomegaly and lymphadenopathy. Homozygotes for one allele show reduced body weight, hematocrit and hemoglobin content, lymphopenia, neutrophilia, social interaction deficits and premature death. Homozygotes for another allele show altered macrophage and microglia physiology. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 42 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abcc8 |
A |
G |
7: 45,755,227 (GRCm39) |
|
probably null |
Het |
Alk |
C |
A |
17: 72,208,388 (GRCm39) |
G944V |
probably damaging |
Het |
Alox15 |
T |
C |
11: 70,236,727 (GRCm39) |
D446G |
probably damaging |
Het |
Apof |
A |
G |
10: 128,105,353 (GRCm39) |
|
probably null |
Het |
Arhgap28 |
T |
G |
17: 68,180,154 (GRCm39) |
D81A |
possibly damaging |
Het |
Bltp1 |
T |
C |
3: 37,084,813 (GRCm39) |
S3922P |
probably benign |
Het |
Bms1 |
T |
C |
6: 118,382,185 (GRCm39) |
E451G |
possibly damaging |
Het |
Capn13 |
T |
A |
17: 73,658,421 (GRCm39) |
T216S |
possibly damaging |
Het |
Ccdc28a |
A |
T |
10: 18,089,931 (GRCm39) |
|
probably benign |
Het |
Cdip1 |
T |
C |
16: 4,586,676 (GRCm39) |
T150A |
probably damaging |
Het |
Chrnb3 |
T |
A |
8: 27,883,836 (GRCm39) |
L191Q |
probably damaging |
Het |
Chst2 |
G |
A |
9: 95,287,285 (GRCm39) |
Q354* |
probably null |
Het |
Cldn11 |
T |
C |
3: 31,204,345 (GRCm39) |
V16A |
probably benign |
Het |
Cyp4f18 |
A |
G |
8: 72,752,072 (GRCm39) |
M198T |
probably damaging |
Het |
Dhx30 |
A |
G |
9: 109,920,587 (GRCm39) |
L280P |
probably damaging |
Het |
Disc1 |
A |
G |
8: 125,862,258 (GRCm39) |
|
probably benign |
Het |
Dnm1l |
T |
C |
16: 16,154,840 (GRCm39) |
I172V |
possibly damaging |
Het |
Edem2 |
T |
C |
2: 155,550,983 (GRCm39) |
D328G |
possibly damaging |
Het |
Fbxo10 |
G |
A |
4: 45,062,517 (GRCm39) |
T3M |
probably benign |
Het |
Fdxacb1 |
T |
A |
9: 50,682,863 (GRCm39) |
S275R |
possibly damaging |
Het |
Gm7275 |
C |
A |
16: 47,893,991 (GRCm39) |
|
noncoding transcript |
Het |
Helz2 |
A |
T |
2: 180,872,815 (GRCm39) |
I2468N |
probably damaging |
Het |
Ift46 |
C |
A |
9: 44,698,176 (GRCm39) |
P213Q |
probably damaging |
Het |
Ift56 |
A |
G |
6: 38,386,373 (GRCm39) |
M365V |
possibly damaging |
Het |
Irf2 |
G |
T |
8: 47,299,207 (GRCm39) |
V334F |
probably damaging |
Het |
Lrp4 |
T |
A |
2: 91,338,927 (GRCm39) |
V1786E |
probably benign |
Het |
Mfsd5 |
A |
G |
15: 102,188,973 (GRCm39) |
Y115C |
probably benign |
Het |
Muc5ac |
A |
G |
7: 141,357,187 (GRCm39) |
R1154G |
possibly damaging |
Het |
Nek4 |
G |
T |
14: 30,686,008 (GRCm39) |
E314* |
probably null |
Het |
Oas2 |
C |
T |
5: 120,886,815 (GRCm39) |
G117D |
possibly damaging |
Het |
Or8j3b |
A |
T |
2: 86,204,867 (GRCm39) |
D296E |
probably benign |
Het |
Pikfyve |
C |
T |
1: 65,283,663 (GRCm39) |
H767Y |
probably damaging |
Het |
Pkhd1 |
T |
C |
1: 20,632,642 (GRCm39) |
H591R |
probably benign |
Het |
Pygl |
T |
A |
12: 70,241,032 (GRCm39) |
I672F |
probably benign |
Het |
Rft1 |
G |
T |
14: 30,382,278 (GRCm39) |
|
probably benign |
Het |
Ripor3 |
A |
C |
2: 167,831,250 (GRCm39) |
L517R |
probably damaging |
Het |
Serpina3b |
A |
G |
12: 104,096,721 (GRCm39) |
M1V |
probably null |
Het |
Sgce |
C |
T |
6: 4,694,059 (GRCm39) |
R263Q |
probably damaging |
Het |
Stard6 |
A |
T |
18: 70,629,183 (GRCm39) |
|
probably null |
Het |
Them4 |
T |
C |
3: 94,230,978 (GRCm39) |
F117L |
probably damaging |
Het |
Tmem214 |
G |
A |
5: 31,030,090 (GRCm39) |
A296T |
probably benign |
Het |
Vmn2r116 |
G |
T |
17: 23,606,338 (GRCm39) |
D417Y |
probably damaging |
Het |
|
Other mutations in C9orf72 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00473:C9orf72
|
APN |
4 |
35,213,616 (GRCm39) |
missense |
possibly damaging |
0.57 |
IGL00718:C9orf72
|
APN |
4 |
35,213,015 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01284:C9orf72
|
APN |
4 |
35,218,808 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL01998:C9orf72
|
APN |
4 |
35,194,179 (GRCm39) |
missense |
probably benign |
0.30 |
IGL02185:C9orf72
|
APN |
4 |
35,197,046 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02823:C9orf72
|
APN |
4 |
35,213,031 (GRCm39) |
missense |
probably damaging |
0.98 |
R0194:C9orf72
|
UTSW |
4 |
35,197,207 (GRCm39) |
missense |
probably damaging |
1.00 |
R0471:C9orf72
|
UTSW |
4 |
35,193,257 (GRCm39) |
missense |
probably benign |
0.01 |
R1172:C9orf72
|
UTSW |
4 |
35,218,630 (GRCm39) |
missense |
probably damaging |
0.99 |
R1175:C9orf72
|
UTSW |
4 |
35,218,630 (GRCm39) |
missense |
probably damaging |
0.99 |
R1765:C9orf72
|
UTSW |
4 |
35,197,098 (GRCm39) |
missense |
probably damaging |
1.00 |
R4326:C9orf72
|
UTSW |
4 |
35,225,985 (GRCm39) |
unclassified |
probably benign |
|
R4327:C9orf72
|
UTSW |
4 |
35,225,985 (GRCm39) |
unclassified |
probably benign |
|
R4328:C9orf72
|
UTSW |
4 |
35,225,985 (GRCm39) |
unclassified |
probably benign |
|
R4679:C9orf72
|
UTSW |
4 |
35,226,033 (GRCm39) |
unclassified |
probably benign |
|
R4844:C9orf72
|
UTSW |
4 |
35,213,565 (GRCm39) |
missense |
possibly damaging |
0.47 |
R5150:C9orf72
|
UTSW |
4 |
35,193,270 (GRCm39) |
missense |
possibly damaging |
0.92 |
R5528:C9orf72
|
UTSW |
4 |
35,213,556 (GRCm39) |
missense |
probably benign |
0.18 |
R5789:C9orf72
|
UTSW |
4 |
35,226,112 (GRCm39) |
unclassified |
probably benign |
|
R7790:C9orf72
|
UTSW |
4 |
35,192,997 (GRCm39) |
missense |
unknown |
|
R7805:C9orf72
|
UTSW |
4 |
35,194,170 (GRCm39) |
missense |
|
|
R8115:C9orf72
|
UTSW |
4 |
35,218,763 (GRCm39) |
missense |
|
|
R9049:C9orf72
|
UTSW |
4 |
35,192,964 (GRCm39) |
missense |
unknown |
|
R9327:C9orf72
|
UTSW |
4 |
35,205,883 (GRCm39) |
missense |
|
|
R9373:C9orf72
|
UTSW |
4 |
35,196,985 (GRCm39) |
missense |
|
|
R9590:C9orf72
|
UTSW |
4 |
35,218,557 (GRCm39) |
missense |
|
|
R9591:C9orf72
|
UTSW |
4 |
35,218,557 (GRCm39) |
missense |
|
|
|
Posted On |
2015-04-16 |