Incidental Mutation 'IGL02419:St8sia1'
| ID |
292584 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
St8sia1
|
| Ensembl Gene |
ENSMUSG00000030283 |
| Gene Name |
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 |
| Synonyms |
GD3S, GD3 synthase, Siat8, ST8Sia I, alpha-2,8-sialyltransferase, Siat8a, 9330109E03Rik |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.050)
|
| Stock # |
IGL02419
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
6 |
| Chromosomal Location |
142767271-142910178 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 142774661 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Asparagine
at position 306
(I306N)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000032421
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000032421]
[ENSMUST00000205149]
|
| AlphaFold |
Q64687 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000032421
AA Change: I306N
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000032421
Gene: ENSMUSG00000030283
AA Change: I306N
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
27 |
49 |
N/A |
INTRINSIC |
|
Pfam:Glyco_transf_29
|
90 |
344 |
8.1e-73 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000100821
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147058
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000205149
|
| SMART Domains |
Protein: ENSMUSP00000145148
Gene: ENSMUSG00000030283
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
27 |
49 |
N/A |
INTRINSIC |
|
transmembrane domain
|
76 |
95 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Gangliosides are membrane-bound glycosphingolipids containing sialic acid. Ganglioside GD3 is known to be important for cell adhesion and growth of cultured malignant cells. The protein encoded by this gene is a type II membrane protein that catalyzes the transfer of sialic acid from CMP-sialic acid to GM3 to produce gangliosides GD3 and GT3. The encoded protein may be found in the Golgi apparatus and is a member of glycosyltransferase family 29. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2015]
PHENOTYPE: Homozygotes for a targeted allele are behaviorally normal with no signs of aberrant brain histology or demyelination. Homozygotes for a knock-out allele are behaviorally intact with normal nervous tissue morphology and sensitivity to Fas-mediated apoptosis but show impaired repair of damaged nerves. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 47 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4933402J07Rik |
T |
C |
8: 88,312,727 (GRCm39) |
F171L |
possibly damaging |
Het |
| Abca2 |
A |
G |
2: 25,336,849 (GRCm39) |
N2291D |
probably benign |
Het |
| Adamts9 |
A |
G |
6: 92,773,978 (GRCm39) |
V1145A |
probably benign |
Het |
| Adcy2 |
A |
G |
13: 69,130,482 (GRCm39) |
V135A |
probably benign |
Het |
| Akr1c14 |
A |
T |
13: 4,130,617 (GRCm39) |
|
probably null |
Het |
| Aptx |
G |
T |
4: 40,691,032 (GRCm39) |
A229E |
probably benign |
Het |
| Ash1l |
T |
C |
3: 88,892,872 (GRCm39) |
S1584P |
probably benign |
Het |
| Catsper3 |
A |
T |
13: 55,955,881 (GRCm39) |
T329S |
possibly damaging |
Het |
| Cntrl |
A |
G |
2: 35,024,055 (GRCm39) |
D27G |
probably damaging |
Het |
| Cobll1 |
A |
T |
2: 64,981,392 (GRCm39) |
I98K |
probably damaging |
Het |
| Ctdp1 |
T |
C |
18: 80,463,799 (GRCm39) |
K79R |
probably damaging |
Het |
| Cwf19l2 |
T |
C |
9: 3,418,777 (GRCm39) |
|
probably null |
Het |
| Cyp11b2 |
A |
T |
15: 74,722,904 (GRCm39) |
F498Y |
probably damaging |
Het |
| Dnpep |
A |
G |
1: 75,292,332 (GRCm39) |
I162T |
probably damaging |
Het |
| Efcab9 |
T |
C |
11: 32,472,950 (GRCm39) |
I166V |
probably benign |
Het |
| Ep400 |
A |
T |
5: 110,845,242 (GRCm39) |
|
probably null |
Het |
| Gata6 |
G |
A |
18: 11,054,220 (GRCm39) |
G50R |
probably damaging |
Het |
| Gm9631 |
G |
A |
11: 121,834,478 (GRCm39) |
|
|
Het |
| Grifin |
T |
C |
5: 140,550,455 (GRCm39) |
T20A |
probably benign |
Het |
| Hnf4a |
A |
T |
2: 163,408,202 (GRCm39) |
I352F |
probably damaging |
Het |
| Ifi204 |
T |
C |
1: 173,576,946 (GRCm39) |
T552A |
possibly damaging |
Het |
| Ifi205 |
C |
T |
1: 173,845,180 (GRCm39) |
A201T |
probably damaging |
Het |
| Kcnk6 |
A |
G |
7: 28,924,627 (GRCm39) |
V259A |
probably benign |
Het |
| Kif21b |
A |
G |
1: 136,079,005 (GRCm39) |
N451S |
probably benign |
Het |
| Klhl24 |
T |
A |
16: 19,926,118 (GRCm39) |
Y215* |
probably null |
Het |
| Lyst |
G |
A |
13: 13,835,541 (GRCm39) |
C1741Y |
probably benign |
Het |
| Mical1 |
A |
G |
10: 41,358,273 (GRCm39) |
K429E |
possibly damaging |
Het |
| Misp |
A |
G |
10: 79,663,705 (GRCm39) |
|
probably benign |
Het |
| Mon2 |
T |
C |
10: 122,852,352 (GRCm39) |
N1007S |
probably benign |
Het |
| Or10v1 |
A |
T |
19: 11,874,186 (GRCm39) |
Y267F |
probably benign |
Het |
| Or14a260 |
C |
A |
7: 85,984,870 (GRCm39) |
V245F |
probably damaging |
Het |
| Or51v8 |
A |
T |
7: 103,319,682 (GRCm39) |
C185* |
probably null |
Het |
| Or8k41 |
T |
A |
2: 86,313,259 (GRCm39) |
I276F |
probably damaging |
Het |
| Pex6 |
C |
A |
17: 47,035,361 (GRCm39) |
T840N |
possibly damaging |
Het |
| Prox1 |
C |
T |
1: 189,893,327 (GRCm39) |
A373T |
probably benign |
Het |
| Rapgef3 |
G |
T |
15: 97,648,171 (GRCm39) |
N679K |
probably benign |
Het |
| Serpina3n |
T |
C |
12: 104,379,777 (GRCm39) |
V390A |
possibly damaging |
Het |
| Sirpb1a |
A |
G |
3: 15,491,398 (GRCm39) |
F23S |
probably benign |
Het |
| Slc44a3 |
T |
C |
3: 121,283,906 (GRCm39) |
T449A |
probably benign |
Het |
| Smad6 |
G |
A |
9: 63,860,800 (GRCm39) |
|
probably benign |
Het |
| Sos2 |
C |
T |
12: 69,663,764 (GRCm39) |
M573I |
probably benign |
Het |
| Tnks1bp1 |
T |
C |
2: 84,902,125 (GRCm39) |
S1674P |
possibly damaging |
Het |
| Trim47 |
G |
A |
11: 115,997,027 (GRCm39) |
R576W |
probably damaging |
Het |
| Wdr86 |
A |
T |
5: 24,927,702 (GRCm39) |
I79N |
probably damaging |
Het |
| Wwp2 |
T |
A |
8: 108,276,447 (GRCm39) |
V473D |
probably damaging |
Het |
| Zc3h12a |
T |
C |
4: 125,013,581 (GRCm39) |
T428A |
probably benign |
Het |
| Zfp592 |
A |
G |
7: 80,687,993 (GRCm39) |
E973G |
probably damaging |
Het |
|
| Other mutations in St8sia1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02081:St8sia1
|
APN |
6 |
142,774,953 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02138:St8sia1
|
APN |
6 |
142,909,504 (GRCm39) |
utr 5 prime |
probably benign |
|
|
IGL03407:St8sia1
|
APN |
6 |
142,859,775 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
PIT4453001:St8sia1
|
UTSW |
6 |
142,774,978 (GRCm39) |
nonsense |
probably null |
|
|
PIT4498001:St8sia1
|
UTSW |
6 |
142,859,848 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0167:St8sia1
|
UTSW |
6 |
142,859,907 (GRCm39) |
splice site |
probably benign |
|
|
R0690:St8sia1
|
UTSW |
6 |
142,774,980 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1727:St8sia1
|
UTSW |
6 |
142,822,453 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1743:St8sia1
|
UTSW |
6 |
142,774,742 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1937:St8sia1
|
UTSW |
6 |
142,909,398 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2923:St8sia1
|
UTSW |
6 |
142,774,963 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2983:St8sia1
|
UTSW |
6 |
142,909,355 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R3824:St8sia1
|
UTSW |
6 |
142,774,751 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4803:St8sia1
|
UTSW |
6 |
142,813,649 (GRCm39) |
missense |
probably benign |
0.04 |
|
R4844:St8sia1
|
UTSW |
6 |
142,774,996 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R4865:St8sia1
|
UTSW |
6 |
142,774,796 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4886:St8sia1
|
UTSW |
6 |
142,859,860 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5170:St8sia1
|
UTSW |
6 |
142,909,434 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5519:St8sia1
|
UTSW |
6 |
142,909,287 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5783:St8sia1
|
UTSW |
6 |
142,909,340 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R6713:St8sia1
|
UTSW |
6 |
142,775,008 (GRCm39) |
splice site |
probably null |
|
|
R7017:St8sia1
|
UTSW |
6 |
142,813,632 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7144:St8sia1
|
UTSW |
6 |
142,822,395 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7997:St8sia1
|
UTSW |
6 |
142,909,376 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:St8sia1
|
UTSW |
6 |
142,774,825 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:St8sia1
|
UTSW |
6 |
142,774,536 (GRCm39) |
nonsense |
probably null |
|
|
| Posted On |
2015-04-16 |
Incidental Mutation