Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02427:Cpsf4l'

292975

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Cpsf4l

Ensembl Gene

ENSMUSG00000018727

Gene Name

cleavage and polyadenylation specific factor 4-like

Synonyms

1500000C01Rik, D11Ertd636e, 0610010C04Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.076) question?

Stock #

IGL02427

Quality Score

Status

Chromosome

Chromosomal Location

113588998-113600843 bp(-) (GRCm39)

Type of Mutation

utr 5 prime

DNA Base Change (assembly)

T to G at 113600324 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133451 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000018871] [ENSMUST00000100248] [ENSMUST00000106617] [ENSMUST00000173655]

AlphaFold

E9Q2N0

Predicted Effect

probably benign
Transcript: ENSMUST00000018871

SMART Domains

Protein: ENSMUSP00000018871
Gene: ENSMUSG00000018727

Domain	Start	End	E-Value	Type
ZnF_C3H1	10	36	1.1e-2	SMART
ZnF_C3H1	38	64	4.64e-1	SMART
ZnF_C3H1	68	93	2.34e0	SMART
ZnF_C3H1	94	117	2.4e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000100248

SMART Domains

Protein: ENSMUSP00000097819
Gene: ENSMUSG00000018727

Domain	Start	End	E-Value	Type
low complexity region	62	74	N/A	INTRINSIC
ZnF_C3H1	89	114	3.38e-1	SMART
ZnF_C3H1	115	141	1.1e-2	SMART
ZnF_C3H1	143	169	4.64e-1	SMART
ZnF_C3H1	173	197	1.36e-2	SMART
ZnF_C3H1	198	221	5.21e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000106617

SMART Domains

Protein: ENSMUSP00000102228
Gene: ENSMUSG00000018727

Domain	Start	End	E-Value	Type
ZnF_C3H1	10	36	1.1e-2	SMART
ZnF_C3H1	38	64	4.64e-1	SMART
ZnF_C3H1	68	93	2.34e0	SMART
ZnF_C3H1	94	117	5.21e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151396

Predicted Effect

probably benign
Transcript: ENSMUST00000173655

SMART Domains

Protein: ENSMUSP00000133451
Gene: ENSMUSG00000018727

Domain	Start	End	E-Value	Type
ZnF_C3H1	35	61	1.33e-1	SMART
ZnF_C3H1	62	88	1.1e-2	SMART
ZnF_C3H1	90	116	4.64e-1	SMART
ZnF_C3H1	120	145	2.34e0	SMART
ZnF_C3H1	146	169	5.21e-1	SMART

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A930011G23Rik	C	T	5: 99,381,829 (GRCm39)	G311D	probably damaging	Het
Ablim1	A	T	19: 57,068,312 (GRCm39)		probably benign	Het
Adgrg2	T	C	X: 159,274,400 (GRCm39)	F863S	probably damaging	Het
B3galt2	A	T	1: 143,522,254 (GRCm39)	H130L	probably benign	Het
Bbs2	G	A	8: 94,807,746 (GRCm39)	P378S	possibly damaging	Het
Ccdc154	A	T	17: 25,390,731 (GRCm39)		probably null	Het
Ccdc88c	C	T	12: 100,887,851 (GRCm39)	C1543Y	probably damaging	Het
Cdcp3	T	A	7: 130,846,517 (GRCm39)	V647E	probably damaging	Het
Cfap77	A	T	2: 28,845,592 (GRCm39)	C258*	probably null	Het
Csrnp3	G	A	2: 65,708,380 (GRCm39)		probably benign	Het
Cul9	G	A	17: 46,813,558 (GRCm39)	T2305I	possibly damaging	Het
Cwf19l1	G	A	19: 44,121,462 (GRCm39)	Q29*	probably null	Het
Cwf19l2	G	T	9: 3,456,817 (GRCm39)	V717L	probably benign	Het
Cyp1a1	A	G	9: 57,607,858 (GRCm39)	Y162C	probably damaging	Het
Dlg5	T	C	14: 24,216,275 (GRCm39)	D589G	probably damaging	Het
Dmbt1	G	T	7: 130,689,815 (GRCm39)		probably null	Het
Dtna	T	C	18: 23,784,595 (GRCm39)	Y705H	possibly damaging	Het
Fancd2	T	A	6: 113,526,313 (GRCm39)		probably null	Het
Frem2	T	A	3: 53,443,184 (GRCm39)	N2527Y	probably damaging	Het
Gm7694	T	C	1: 170,130,113 (GRCm39)	D95G	probably benign	Het
Haus5	T	C	7: 30,361,196 (GRCm39)	T115A	probably benign	Het
Kdm3a	A	T	6: 71,569,184 (GRCm39)		probably benign	Het
Klra6	T	C	6: 129,993,680 (GRCm39)	D197G	possibly damaging	Het
Lap3	T	C	5: 45,668,475 (GRCm39)	V429A	probably damaging	Het
Mroh2b	G	T	15: 4,981,042 (GRCm39)		probably benign	Het
Myh9	T	A	15: 77,660,004 (GRCm39)	Q88L	probably damaging	Het
Myo5a	T	C	9: 75,083,900 (GRCm39)		probably benign	Het
Negr1	C	T	3: 156,267,827 (GRCm39)		probably benign	Het
Niban1	A	T	1: 151,593,025 (GRCm39)	D570V	probably damaging	Het
Nlrp9b	T	G	7: 19,776,426 (GRCm39)	C337W	probably damaging	Het
Obscn	A	T	11: 58,957,988 (GRCm39)	C3780S	probably damaging	Het
Or1e19	A	T	11: 73,316,487 (GRCm39)	F107L	probably damaging	Het
Piwil2	T	A	14: 70,635,583 (GRCm39)		probably benign	Het
Ppp6r3	T	C	19: 3,516,580 (GRCm39)	S213G	probably null	Het
Pxdn	T	A	12: 30,034,531 (GRCm39)	C39S	probably damaging	Het
Raf1	T	C	6: 115,608,288 (GRCm39)	N241S	probably benign	Het
Rapgef3	A	T	15: 97,645,017 (GRCm39)		probably null	Het
Rhox2h	C	T	X: 36,854,526 (GRCm39)	G72D	probably benign	Het
Sbf1	T	C	15: 89,190,188 (GRCm39)		probably benign	Het
Sema5a	T	C	15: 32,673,690 (GRCm39)		probably benign	Het
Setbp1	T	C	18: 78,900,688 (GRCm39)	D993G	probably damaging	Het
Slc5a4b	A	T	10: 75,894,713 (GRCm39)	C598S	possibly damaging	Het
Sorl1	T	C	9: 41,952,986 (GRCm39)	D685G	probably damaging	Het
Sulf2	C	T	2: 165,931,218 (GRCm39)	R263H	probably damaging	Het
Tbx22	C	A	X: 106,724,777 (GRCm39)	P17T	probably damaging	Het
Tspoap1	A	T	11: 87,653,341 (GRCm39)	T136S	probably benign	Het
Tyw5	T	C	1: 57,427,884 (GRCm39)	E240G	possibly damaging	Het
Umodl1	C	T	17: 31,187,415 (GRCm39)		probably benign	Het
Vmn1r60	T	C	7: 5,547,780 (GRCm39)	T107A	probably damaging	Het
Zbbx	T	C	3: 75,046,905 (GRCm39)	T121A	probably benign	Het
Zbtb11	A	G	16: 55,802,713 (GRCm39)	D241G	possibly damaging	Het
Zfp445	T	C	9: 122,681,295 (GRCm39)	H882R	probably benign	Het
Zscan30	T	C	18: 24,104,533 (GRCm39)		noncoding transcript	Het

Other mutations in Cpsf4l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00430:Cpsf4l	APN	11	113,600,044 (GRCm39)	intron	probably benign
IGL02132:Cpsf4l	APN	11	113,590,685 (GRCm39)	missense	possibly damaging	0.84
R0790:Cpsf4l	UTSW	11	113,597,234 (GRCm39)	splice site	probably benign
R1700:Cpsf4l	UTSW	11	113,592,901 (GRCm39)	missense	probably benign	0.17
R1909:Cpsf4l	UTSW	11	113,594,204 (GRCm39)	splice site	probably null
R3522:Cpsf4l	UTSW	11	113,593,319 (GRCm39)	missense	probably damaging	1.00
R4830:Cpsf4l	UTSW	11	113,600,328 (GRCm39)	utr 5 prime	probably benign
R6006:Cpsf4l	UTSW	11	113,590,753 (GRCm39)	missense	probably benign	0.23
R6229:Cpsf4l	UTSW	11	113,599,680 (GRCm39)	missense	possibly damaging	0.89
R6593:Cpsf4l	UTSW	11	113,600,192 (GRCm39)	intron	probably benign
R7107:Cpsf4l	UTSW	11	113,593,315 (GRCm39)	missense	possibly damaging	0.55
R7373:Cpsf4l	UTSW	11	113,590,657 (GRCm39)	splice site	probably null
R8517:Cpsf4l	UTSW	11	113,599,651 (GRCm39)	missense	probably benign	0.02
R8733:Cpsf4l	UTSW	11	113,600,279 (GRCm39)	missense	possibly damaging	0.91

Posted On

2015-04-16