Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02448:Srf'

293603

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Srf

Ensembl Gene

ENSMUSG00000015605

Gene Name

serum response factor

Synonyms

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL02448

Quality Score

Status

Chromosome

Chromosomal Location

46859255-46867101 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 46866349 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 136 (T136A)

Ref Sequence

ENSEMBL: ENSMUSP00000015749 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015749]

AlphaFold

Q9JM73

Predicted Effect

possibly damaging
Transcript: ENSMUST00000015749
AA Change: T136A

PolyPhen 2 Score 0.467 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000015749
Gene: ENSMUSG00000015605
AA Change: T136A

Domain	Start	End	E-Value	Type
low complexity region	6	46	N/A	INTRINSIC
low complexity region	60	70	N/A	INTRINSIC
low complexity region	73	90	N/A	INTRINSIC
low complexity region	104	130	N/A	INTRINSIC
MADS	137	196	3.08e-28	SMART
low complexity region	217	229	N/A	INTRINSIC
Blast:MADS	256	289	3e-11	BLAST
low complexity region	300	314	N/A	INTRINSIC
internal_repeat_1	335	360	6.39e-6	PROSPERO
low complexity region	368	383	N/A	INTRINSIC
internal_repeat_1	450	473	6.39e-6	PROSPERO

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181301

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000199897

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a ubiquitous nuclear protein that stimulates both cell proliferation and differentiation. It is a member of the MADS (MCM1, Agamous, Deficiens, and SRF) box superfamily of transcription factors. This protein binds to the serum response element (SRE) in the promoter region of target genes. This protein regulates the activity of many immediate-early genes, for example c-fos, and thereby participates in cell cycle regulation, apoptosis, cell growth, and cell differentiation. This gene is the downstream target of many pathways; for example, the mitogen-activated protein kinase pathway (MAPK) that acts through the ternary complex factors (TCFs). Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2014]
PHENOTYPE: Homozygous null mice exhibit embryonic lethality, abnormal gastrulation, no mesoderm or primitive streak formation and reduced embryo size. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 43 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Angptl6	T	A	9: 20,786,866 (GRCm39)	I286F	probably damaging	Het
Arhgap5	A	G	12: 52,609,123 (GRCm39)	E1366G	probably damaging	Het
Blzf1	T	A	1: 164,123,350 (GRCm39)	I326F	possibly damaging	Het
Cc2d2a	A	C	5: 43,840,547 (GRCm39)		probably benign	Het
Cdc37	T	C	9: 21,051,147 (GRCm39)	E366G	possibly damaging	Het
Cdh17	T	C	4: 11,784,680 (GRCm39)	S279P	probably benign	Het
Cdh18	T	C	15: 23,173,875 (GRCm39)	S30P	probably benign	Het
Cep192	A	G	18: 68,002,518 (GRCm39)	T2238A	probably benign	Het
Cpped1	C	T	16: 11,623,253 (GRCm39)	E289K	probably benign	Het
Ctsq	A	T	13: 61,184,044 (GRCm39)	Y293N	probably damaging	Het
Epb41l2	A	G	10: 25,369,493 (GRCm39)	N20S	possibly damaging	Het
Gcc2	T	A	10: 58,128,393 (GRCm39)	C1304*	probably null	Het
Hsd3b5	C	T	3: 98,529,447 (GRCm39)	G61E	probably damaging	Het
Igfals	A	T	17: 25,099,161 (GRCm39)	N84I	probably damaging	Het
Irs2	A	T	8: 11,057,862 (GRCm39)	V190D	probably benign	Het
Kank1	T	A	19: 25,388,739 (GRCm39)	L804Q	probably damaging	Het
Kcnj2	G	T	11: 110,963,108 (GRCm39)	V167L	probably benign	Het
Kif20a	T	C	18: 34,761,507 (GRCm39)	V300A	possibly damaging	Het
Kmt2d	T	C	15: 98,741,991 (GRCm39)		probably benign	Het
Moxd1	T	C	10: 24,158,617 (GRCm39)	F424L	probably damaging	Het
Mpeg1	A	C	19: 12,439,973 (GRCm39)	D477A	probably benign	Het
Mtmr10	A	T	7: 63,957,898 (GRCm39)	Y166F	probably damaging	Het
Muc5b	T	G	7: 141,422,226 (GRCm39)	I4454S	possibly damaging	Het
Ntng1	G	A	3: 109,841,875 (GRCm39)		probably benign	Het
Or52r1b	T	C	7: 102,691,604 (GRCm39)	I306T	possibly damaging	Het
Or7e175	T	A	9: 20,048,937 (GRCm39)	L175*	probably null	Het
Pex11a	A	T	7: 79,387,208 (GRCm39)		probably null	Het
Plcg2	A	G	8: 118,333,960 (GRCm39)	D911G	probably benign	Het
Rc3h2	T	C	2: 37,279,817 (GRCm39)	T471A	probably benign	Het
Rif1	T	A	2: 52,006,708 (GRCm39)	L2214Q	probably damaging	Het
Rtel1	T	A	2: 180,977,830 (GRCm39)	S120T	probably benign	Het
Ryr1	A	G	7: 28,804,491 (GRCm39)		probably benign	Het
Sh3yl1	G	T	12: 30,989,666 (GRCm39)	A129S	probably damaging	Het
Slc25a10	A	G	11: 120,387,879 (GRCm39)	T191A	probably benign	Het
Slc8b1	T	C	5: 120,663,856 (GRCm39)	S359P	probably damaging	Het
Stx1a	G	T	5: 135,052,473 (GRCm39)		probably benign	Het
Taf1d	T	A	9: 15,221,690 (GRCm39)	C224*	probably null	Het
Tnik	A	G	3: 28,675,226 (GRCm39)	S700G	probably null	Het
Ttn	T	C	2: 76,773,331 (GRCm39)	H2357R	probably benign	Het
Ttn	T	C	2: 76,566,458 (GRCm39)	E28145G	probably damaging	Het
Ush1c	C	A	7: 45,858,561 (GRCm39)	V576F	possibly damaging	Het
Xpc	T	C	6: 91,492,726 (GRCm39)	E19G	probably benign	Het
Zdhhc25	G	A	15: 88,485,045 (GRCm39)	V127M	probably damaging	Het

Other mutations in Srf

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01836:Srf	APN	17	46,860,108 (GRCm39)	unclassified	probably benign
R0277:Srf	UTSW	17	46,860,415 (GRCm39)	missense	possibly damaging	0.54
R0323:Srf	UTSW	17	46,860,415 (GRCm39)	missense	possibly damaging	0.54
R1633:Srf	UTSW	17	46,862,534 (GRCm39)	missense	probably damaging	1.00
R1807:Srf	UTSW	17	46,864,685 (GRCm39)	missense	possibly damaging	0.88
R1930:Srf	UTSW	17	46,860,912 (GRCm39)	missense	probably damaging	1.00
R1932:Srf	UTSW	17	46,860,912 (GRCm39)	missense	probably damaging	1.00
R1951:Srf	UTSW	17	46,862,633 (GRCm39)	missense	possibly damaging	0.94
R4851:Srf	UTSW	17	46,860,400 (GRCm39)	missense	probably benign	0.33
R7017:Srf	UTSW	17	46,861,830 (GRCm39)	missense	probably benign	0.18
R7128:Srf	UTSW	17	46,866,372 (GRCm39)	missense	possibly damaging	0.88
R7177:Srf	UTSW	17	46,866,318 (GRCm39)	missense	probably damaging	0.99
R7315:Srf	UTSW	17	46,862,720 (GRCm39)	critical splice acceptor site	probably null
R8019:Srf	UTSW	17	46,866,748 (GRCm39)	missense	unknown
R8678:Srf	UTSW	17	46,861,825 (GRCm39)	critical splice donor site	probably null
R8927:Srf	UTSW	17	46,860,095 (GRCm39)	missense	probably damaging	1.00
R8928:Srf	UTSW	17	46,860,095 (GRCm39)	missense	probably damaging	1.00
R9710:Srf	UTSW	17	46,866,271 (GRCm39)	missense	probably benign	0.29
R9778:Srf	UTSW	17	46,860,079 (GRCm39)	missense	possibly damaging	0.90

Posted On

2015-04-16