Incidental Mutation 'IGL02455:Ly6g6f'
ID 293803
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Ly6g6f
Ensembl Gene ENSMUSG00000034923
Gene Name lymphocyte antigen 6 family member G6F
Synonyms
Accession Numbers
Essential gene? Probably non essential (E-score: 0.063) question?
Stock # IGL02455
Quality Score
Status
Chromosome 17
Chromosomal Location 35299514-35304571 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 35301866 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Histidine at position 196 (R196H)
Ref Sequence ENSEMBL: ENSMUSP00000046380 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000013910] [ENSMUST00000038507] [ENSMUST00000172494] [ENSMUST00000172678] [ENSMUST00000172959]
AlphaFold B2RXM6
Predicted Effect probably benign
Transcript: ENSMUST00000013910
SMART Domains Protein: ENSMUSP00000013910
Gene: ENSMUSG00000013766

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
LU 28 117 1.65e-2 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000038507
AA Change: R196H

PolyPhen 2 Score 0.906 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000046380
Gene: ENSMUSG00000034923
AA Change: R196H

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
IG 21 127 6.02e-7 SMART
transmembrane domain 237 259 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000172494
SMART Domains Protein: ENSMUSP00000133645
Gene: ENSMUSG00000013766

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Blast:LU 28 50 1e-8 BLAST
Predicted Effect noncoding transcript
Transcript: ENSMUST00000172639
Predicted Effect probably benign
Transcript: ENSMUST00000172678
SMART Domains Protein: ENSMUSP00000134073
Gene: ENSMUSG00000013766

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
LU 28 117 1.65e-2 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000172745
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173120
Predicted Effect probably benign
Transcript: ENSMUST00000172959
SMART Domains Protein: ENSMUSP00000133753
Gene: ENSMUSG00000013766

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:Activin_recp 82 143 2.3e-7 PFAM
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The human G6f protein is a type I transmembrane protein belonging to the immunoglobin (Ig) superfamily, which is comprised of cell-surface proteins involved in the immune system and cellular recognition (de Vet et al., 2003 [PubMed 12852788]).[supplied by OMIM, Mar 2008]
Allele List at MGI
Other mutations in this stock
Total: 49 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcf1 A G 17: 36,271,021 (GRCm39) V479A probably damaging Het
Adam18 T C 8: 25,141,864 (GRCm39) D235G probably damaging Het
Cdh22 T C 2: 164,984,175 (GRCm39) N359S possibly damaging Het
Cebpz G T 17: 79,242,465 (GRCm39) N396K probably benign Het
Celsr3 T A 9: 108,720,092 (GRCm39) W2493R probably benign Het
Clca3a2 C T 3: 144,787,172 (GRCm39) V500M probably benign Het
Clec4a4 A C 6: 122,990,739 (GRCm39) N160H possibly damaging Het
Crb2 T C 2: 37,684,576 (GRCm39) S1139P possibly damaging Het
Dnah8 T C 17: 30,891,308 (GRCm39) I771T probably damaging Het
Etfbkmt C T 6: 149,048,724 (GRCm39) A121V probably damaging Het
Fat4 T A 3: 39,005,280 (GRCm39) L1893Q possibly damaging Het
Fbxw13 A T 9: 109,012,255 (GRCm39) S188T probably benign Het
Fign T C 2: 63,810,841 (GRCm39) D143G probably benign Het
Foxj3 C A 4: 119,477,434 (GRCm39) H381N unknown Het
Gpr158 A T 2: 21,373,511 (GRCm39) T149S probably benign Het
Ift74 C T 4: 94,524,068 (GRCm39) Q195* probably null Het
Kif2c C A 4: 117,029,551 (GRCm39) M143I probably benign Het
Kmt2b A G 7: 30,278,303 (GRCm39) probably null Het
Krt84 C T 15: 101,434,170 (GRCm39) R599H unknown Het
Map4 C A 9: 109,828,901 (GRCm39) N95K probably benign Het
Mrgprx3-ps T A 7: 46,959,263 (GRCm39) noncoding transcript Het
Mroh9 T C 1: 162,903,149 (GRCm39) M85V probably benign Het
Npffr2 T C 5: 89,715,994 (GRCm39) I107T probably damaging Het
Nrcam T C 12: 44,617,313 (GRCm39) V737A probably damaging Het
Oprm1 A G 10: 6,780,219 (GRCm39) T294A probably damaging Het
Or10d5j T C 9: 39,868,198 (GRCm39) E11G probably damaging Het
Or5w17 A T 2: 87,583,927 (GRCm39) S137T possibly damaging Het
Or7g32 C T 9: 19,408,559 (GRCm39) Q172* probably null Het
Parvg A G 15: 84,214,283 (GRCm39) R156G possibly damaging Het
Pclo T C 5: 14,590,189 (GRCm39) S830P unknown Het
Pde11a T C 2: 75,988,737 (GRCm39) D468G possibly damaging Het
Peak1 A T 9: 56,134,757 (GRCm39) S195T possibly damaging Het
Pkhd1 A G 1: 20,434,425 (GRCm39) Y2338H probably damaging Het
Ppp1r1b A T 11: 98,241,395 (GRCm39) I28F probably damaging Het
Prpf8 A G 11: 75,400,084 (GRCm39) Y2326C probably benign Het
Psmd1 T A 1: 86,006,302 (GRCm39) L223I probably damaging Het
Runx3 T A 4: 134,902,841 (GRCm39) Y310N probably damaging Het
Secisbp2l C T 2: 125,615,398 (GRCm39) D76N possibly damaging Het
Slfn4 A T 11: 83,077,584 (GRCm39) N124I probably damaging Het
Spata13 G A 14: 60,944,163 (GRCm39) V519I probably benign Het
Ssh3 C T 19: 4,314,460 (GRCm39) E365K probably damaging Het
Strc A G 2: 121,206,272 (GRCm39) probably benign Het
Tdp2 T A 13: 25,025,245 (GRCm39) I338N probably damaging Het
Vmn1r13 A T 6: 57,187,457 (GRCm39) R205S probably damaging Het
Wdr19 G T 5: 65,382,102 (GRCm39) A441S probably benign Het
Ylpm1 A G 12: 85,077,037 (GRCm39) D796G probably damaging Het
Zbtb11 T C 16: 55,821,038 (GRCm39) S712P probably damaging Het
Zcchc14 A G 8: 122,333,009 (GRCm39) probably benign Het
Zfp608 T G 18: 55,032,405 (GRCm39) S512R probably damaging Het
Other mutations in Ly6g6f
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01647:Ly6g6f APN 17 35,299,817 (GRCm39) unclassified probably benign
IGL01804:Ly6g6f APN 17 35,300,146 (GRCm39) missense possibly damaging 0.85
IGL02280:Ly6g6f APN 17 35,302,194 (GRCm39) missense probably benign 0.06
IGL02694:Ly6g6f APN 17 35,300,144 (GRCm39) missense possibly damaging 0.96
R0519:Ly6g6f UTSW 17 35,301,828 (GRCm39) missense possibly damaging 0.53
R1169:Ly6g6f UTSW 17 35,302,240 (GRCm39) missense probably damaging 0.99
R1796:Ly6g6f UTSW 17 35,302,478 (GRCm39) missense probably benign 0.02
R5549:Ly6g6f UTSW 17 35,302,333 (GRCm39) missense possibly damaging 0.51
R6717:Ly6g6f UTSW 17 35,304,550 (GRCm39) start codon destroyed probably benign 0.01
R8012:Ly6g6f UTSW 17 35,300,060 (GRCm39) missense possibly damaging 0.53
R9443:Ly6g6f UTSW 17 35,299,826 (GRCm39) missense possibly damaging 0.96
X0017:Ly6g6f UTSW 17 35,304,514 (GRCm39) missense probably benign 0.17
X0027:Ly6g6f UTSW 17 35,300,096 (GRCm39) missense probably benign 0.03
Z1177:Ly6g6f UTSW 17 35,302,008 (GRCm39) missense possibly damaging 0.96
Posted On 2015-04-16