Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02476:Glycam1'

294977

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Glycam1

Ensembl Gene

ENSMUSG00000022491

Gene Name

glycosylation dependent cell adhesion molecule 1

Synonyms

Glycosylation-dependent cell adhesion molecule 1, Sgp50, GlyCAM 1, Sele ligand

Accession Numbers

Essential gene?

Not available question?

Stock #

IGL02476

Quality Score

Status

Chromosome

Chromosomal Location

103471186-103473508 bp(-) (GRCm39)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

G to A at 103471307 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000153908 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023134] [ENSMUST00000228060] [ENSMUST00000228895]

AlphaFold

Q02596

Predicted Effect

probably benign
Transcript: ENSMUST00000023134

SMART Domains

Protein: ENSMUSP00000023134
Gene: ENSMUSG00000022491

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:GLYCAM-1	20	151	6e-62	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226679

Predicted Effect

probably benign
Transcript: ENSMUST00000228060

Predicted Effect

probably benign
Transcript: ENSMUST00000228895

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 46 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aamp	T	A	1: 74,320,683 (GRCm39)		probably benign	Het
Birc6	A	G	17: 75,003,386 (GRCm39)	E4752G	possibly damaging	Het
Chd1	C	T	17: 15,954,535 (GRCm39)	P468S	probably damaging	Het
Cnot3	A	G	7: 3,661,067 (GRCm39)	D556G	probably benign	Het
Csnk1d	A	G	11: 120,863,338 (GRCm39)	Y201H	probably damaging	Het
Dhtkd1	A	G	2: 5,935,717 (GRCm39)	S132P	possibly damaging	Het
Dhx58	G	T	11: 100,593,090 (GRCm39)	Q206K	probably benign	Het
Dio1	C	A	4: 107,149,574 (GRCm39)	V195F	probably damaging	Het
Dio3	T	C	12: 110,245,916 (GRCm39)	V84A	probably benign	Het
Dnai4	T	A	4: 102,944,545 (GRCm39)	I3L	possibly damaging	Het
Extl3	T	C	14: 65,314,693 (GRCm39)	K163R	probably benign	Het
Fat2	A	T	11: 55,201,950 (GRCm39)	S375T	probably damaging	Het
Fbrs	A	G	7: 127,086,841 (GRCm39)	D73G	probably damaging	Het
Fnip1	A	G	11: 54,390,393 (GRCm39)		probably benign	Het
Frmpd4	A	G	X: 166,280,851 (GRCm39)	V343A	probably damaging	Het
Gcc1	T	C	6: 28,420,468 (GRCm39)	D283G	probably benign	Het
Ghr	T	C	15: 3,349,528 (GRCm39)	D550G	probably damaging	Het
Gpatch8	A	G	11: 102,369,417 (GRCm39)	S1374P	probably damaging	Het
Grm1	A	T	10: 10,565,197 (GRCm39)	M1037K	probably benign	Het
Gtpbp3	T	C	8: 71,945,242 (GRCm39)	L438P	probably damaging	Het
Ifi205	G	T	1: 173,842,627 (GRCm39)	N356K	probably damaging	Het
Ifi206	A	G	1: 173,309,132 (GRCm39)	L288P	probably benign	Het
Ift57	T	C	16: 49,584,252 (GRCm39)	V291A	probably benign	Het
Kif13a	A	C	13: 46,938,772 (GRCm39)	C166G	probably damaging	Het
Lypd6	A	G	2: 50,080,740 (GRCm39)	T143A	possibly damaging	Het
Mtus2	G	A	5: 148,014,748 (GRCm39)	A514T	probably benign	Het
Neu2	T	C	1: 87,524,674 (GRCm39)	W220R	probably damaging	Het
Notch3	T	C	17: 32,377,612 (GRCm39)	S155G	possibly damaging	Het
Nrxn2	A	G	19: 6,505,015 (GRCm39)	E286G	probably damaging	Het
Onecut3	A	G	10: 80,349,724 (GRCm39)	E406G	probably benign	Het
Oog2	T	A	4: 143,921,799 (GRCm39)	D236E	probably benign	Het
Pck1	A	G	2: 173,000,075 (GRCm39)	H502R	probably benign	Het
Pld1	A	G	3: 28,102,188 (GRCm39)	Y313C	probably damaging	Het
Rhox3f	A	T	X: 36,763,192 (GRCm39)		probably benign	Het
Rpl34	A	G	3: 130,520,613 (GRCm39)		probably benign	Het
Sema4c	T	C	1: 36,595,031 (GRCm39)	K31E	probably damaging	Het
Septin11	T	C	5: 93,296,443 (GRCm39)		probably null	Het
Slc4a9	T	A	18: 36,668,498 (GRCm39)		probably null	Het
Snrnp200	T	A	2: 127,059,408 (GRCm39)	S434T	probably benign	Het
Snx13	A	T	12: 35,136,940 (GRCm39)	I134F	probably damaging	Het
Syt2	T	C	1: 134,675,369 (GRCm39)	S407P	probably benign	Het
Tbc1d19	T	C	5: 54,046,755 (GRCm39)		probably null	Het
Tbc1d32	G	T	10: 56,074,638 (GRCm39)	Q192K	possibly damaging	Het
Ubr4	T	A	4: 139,148,560 (GRCm39)	C1681*	probably null	Het
Vmn1r43	T	A	6: 89,847,043 (GRCm39)	I148F	possibly damaging	Het
Vwa8	T	C	14: 79,162,781 (GRCm39)	V187A	possibly damaging	Het

Other mutations in Glycam1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00816:Glycam1	APN	15	103,472,659 (GRCm39)	missense	probably damaging	0.99

Posted On

2015-04-16