Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02525:Ptpn9'

297028

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Ptpn9

Ensembl Gene

ENSMUSG00000032290

Gene Name

protein tyrosine phosphatase, non-receptor type 9

Synonyms

Meg2

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.531) question?

Stock #

IGL02525

Quality Score

Status

Chromosome

Chromosomal Location

56902252-56970092 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 56944009 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Stop codon at position 294 (Y294*)

Ref Sequence

ENSEMBL: ENSMUSP00000034832 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034832] [ENSMUST00000216034]

AlphaFold

O35239

Predicted Effect

probably null
Transcript: ENSMUST00000034832
AA Change: Y294*

SMART Domains

Protein: ENSMUSP00000034832
Gene: ENSMUSG00000032290
AA Change: Y294*

Domain	Start	End	E-Value	Type
CRAL_TRIO_N	43	68	1.14e0	SMART
SEC14	90	240	7.33e-40	SMART
PTPc	302	576	1.01e-136	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000216034

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an N-terminal domain that shares a significant similarity with yeast SEC14, which is a protein that has phosphatidylinositol transfer activity and is required for protein secretion through the Golgi complex in yeast. This PTP was found to be activated by polyphosphoinositide, and is thought to be involved in signaling events regulating phagocytosis. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele display hemorrhages, craniofacial anomalies, neural tube defects such as exencephaly and meningomyeloceles, cerebral infarctions, abnormal bone development, and >90% late embryonic lethality in addition to severe defectsin T lymphocyte and platelet activation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam18	C	T	8: 25,101,060 (GRCm39)	V701I	probably benign	Het
Adam18	A	G	8: 25,131,783 (GRCm39)		probably benign	Het
Adamts20	G	T	15: 94,180,959 (GRCm39)		probably null	Het
Adgrf5	G	T	17: 43,760,854 (GRCm39)	V850F	probably damaging	Het
Agap2	T	A	10: 126,919,070 (GRCm39)		probably null	Het
Ap4b1	G	A	3: 103,720,164 (GRCm39)	R62K	probably damaging	Het
Atp2a3	C	A	11: 72,866,165 (GRCm39)	H262N	probably benign	Het
Ccdc12	T	A	9: 110,540,169 (GRCm39)	D120E	probably damaging	Het
Ccdc22	A	G	X: 7,461,249 (GRCm39)	S529P	probably damaging	Het
Cilk1	A	G	9: 78,067,675 (GRCm39)	K390E	probably benign	Het
Col1a2	A	G	6: 4,531,355 (GRCm39)		probably benign	Het
Ddx59	A	T	1: 136,344,743 (GRCm39)	Q138L	probably benign	Het
Dlc1	A	T	8: 37,046,800 (GRCm39)	F1091L	probably damaging	Het
Dnah1	C	T	14: 31,027,790 (GRCm39)	V682M	probably benign	Het
Dock9	C	T	14: 121,877,538 (GRCm39)	D404N	probably damaging	Het
Eif2b4	A	G	5: 31,346,962 (GRCm39)	V402A	probably damaging	Het
Erlin1	T	C	19: 44,027,634 (GRCm39)	H268R	probably benign	Het
Ermard	T	C	17: 15,279,601 (GRCm39)		probably benign	Het
Fam43a	A	G	16: 30,419,596 (GRCm39)	K60R	probably benign	Het
Frmd4b	T	A	6: 97,389,494 (GRCm39)	D78V	probably damaging	Het
Gabrq	A	G	X: 71,880,430 (GRCm39)	T308A	possibly damaging	Het
Gipr	A	G	7: 18,893,690 (GRCm39)	C328R	possibly damaging	Het
Gm17078	T	C	14: 51,848,680 (GRCm39)	N19S	possibly damaging	Het
Gm17541	T	C	12: 4,739,907 (GRCm39)		probably benign	Het
Gm21759	T	C	5: 8,229,967 (GRCm39)		probably benign	Het
Gm7964	A	G	7: 83,405,250 (GRCm39)		noncoding transcript	Het
Gspt1	A	G	16: 11,048,854 (GRCm39)	V318A	probably damaging	Het
Gtf2ird2	A	G	5: 134,245,319 (GRCm39)	S526G	probably benign	Het
Hey2	A	G	10: 30,718,643 (GRCm39)	M1T	probably null	Het
Hipk3	T	C	2: 104,301,757 (GRCm39)	D145G	probably damaging	Het
Itgae	A	G	11: 73,021,777 (GRCm39)	D886G	probably damaging	Het
Ktn1	T	A	14: 47,962,200 (GRCm39)		probably null	Het
Med12l	A	G	3: 58,975,789 (GRCm39)	K239R	probably benign	Het
Milr1	A	T	11: 106,656,101 (GRCm39)	M124L	probably benign	Het
Mon1b	G	T	8: 114,365,455 (GRCm39)	R261L	possibly damaging	Het
Mterf1a	G	A	5: 3,941,583 (GRCm39)	S95F	probably benign	Het
Myef2	C	A	2: 124,955,978 (GRCm39)		probably benign	Het
Nfrkb	T	A	9: 31,325,812 (GRCm39)	I1085N	possibly damaging	Het
Or13f5	A	T	4: 52,825,616 (GRCm39)	Y73F	probably damaging	Het
Or8d2	T	A	9: 38,759,536 (GRCm39)	M42K	possibly damaging	Het
Prodh	G	A	16: 17,890,332 (GRCm39)	Q430*	probably null	Het
Pstk	G	T	7: 130,972,922 (GRCm39)	R7L	probably benign	Het
Ptgr1	C	A	4: 58,978,067 (GRCm39)	E108D	probably benign	Het
Rnls	C	T	19: 33,115,614 (GRCm39)	V153M	possibly damaging	Het
Ros1	T	C	10: 51,992,138 (GRCm39)	T1362A	possibly damaging	Het
Samt3	G	A	X: 85,090,527 (GRCm39)	A140T	possibly damaging	Het
Sbpl	T	A	17: 24,173,837 (GRCm39)	M16L	unknown	Het
Sephs1	G	A	2: 4,911,407 (GRCm39)	C327Y	probably damaging	Het
Slc13a1	A	T	6: 24,137,135 (GRCm39)	I93N	probably damaging	Het
Slc34a1	T	C	13: 55,551,051 (GRCm39)		probably benign	Het
Slc7a9	T	C	7: 35,152,860 (GRCm39)	S93P	probably damaging	Het
Slx4	A	G	16: 3,798,461 (GRCm39)	S1444P	probably damaging	Het
Spmap2l	T	A	5: 77,164,400 (GRCm39)	D134E	probably benign	Het
Stk32b	C	T	5: 37,688,977 (GRCm39)	V116M	probably damaging	Het
Supt5	A	G	7: 28,018,372 (GRCm39)		probably benign	Het
Syne2	T	A	12: 76,147,777 (GRCm39)	S6439T	probably damaging	Het
Taar7d	A	G	10: 23,903,994 (GRCm39)	D292G	possibly damaging	Het
Tal2	A	T	4: 53,785,971 (GRCm39)	I51F	probably damaging	Het
Tk2	A	T	8: 104,970,032 (GRCm39)	N77K	probably benign	Het
Tmprss3	T	A	17: 31,413,865 (GRCm39)		probably benign	Het
Tnfrsf10b	T	C	14: 70,019,825 (GRCm39)	M319T	probably damaging	Het
Trim24	A	G	6: 37,922,653 (GRCm39)	R417G	probably damaging	Het
Ttn	C	A	2: 76,594,658 (GRCm39)	G18717*	probably null	Het
Vmn2r102	A	G	17: 19,901,447 (GRCm39)	T525A	probably benign	Het
Wdr38	A	T	2: 38,888,424 (GRCm39)	N7I	probably damaging	Het
Wnt3	C	T	11: 103,703,296 (GRCm39)	R260W	probably damaging	Het
Xdh	T	A	17: 74,231,990 (GRCm39)	Q240L	possibly damaging	Het
Zbtb5	T	C	4: 44,994,731 (GRCm39)	T218A	probably benign	Het
Znfx1	C	T	2: 166,879,457 (GRCm39)	E776K	probably benign	Het

Other mutations in Ptpn9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01072:Ptpn9	APN	9	56,943,987 (GRCm39)	missense	possibly damaging	0.68
IGL01388:Ptpn9	APN	9	56,944,002 (GRCm39)	missense	probably benign	0.00
IGL01953:Ptpn9	APN	9	56,964,072 (GRCm39)	missense	possibly damaging	0.69
IGL03294:Ptpn9	APN	9	56,934,671 (GRCm39)	missense	possibly damaging	0.79
BB009:Ptpn9	UTSW	9	56,943,900 (GRCm39)	missense	possibly damaging	0.48
BB019:Ptpn9	UTSW	9	56,943,900 (GRCm39)	missense	possibly damaging	0.48
PIT4486001:Ptpn9	UTSW	9	56,968,287 (GRCm39)	missense	probably damaging	0.99
R0530:Ptpn9	UTSW	9	56,968,417 (GRCm39)	missense	probably benign
R1617:Ptpn9	UTSW	9	56,934,692 (GRCm39)	missense	possibly damaging	0.79
R1964:Ptpn9	UTSW	9	56,967,196 (GRCm39)	missense	probably damaging	1.00
R2426:Ptpn9	UTSW	9	56,934,712 (GRCm39)	missense	possibly damaging	0.61
R4394:Ptpn9	UTSW	9	56,943,847 (GRCm39)	missense	possibly damaging	0.91
R4606:Ptpn9	UTSW	9	56,929,495 (GRCm39)	missense	possibly damaging	0.71
R4658:Ptpn9	UTSW	9	56,927,321 (GRCm39)	missense	probably benign	0.01
R4660:Ptpn9	UTSW	9	56,943,782 (GRCm39)	missense	probably benign	0.17
R5141:Ptpn9	UTSW	9	56,943,960 (GRCm39)	missense	possibly damaging	0.56
R5150:Ptpn9	UTSW	9	56,943,954 (GRCm39)	missense	probably benign
R5289:Ptpn9	UTSW	9	56,967,347 (GRCm39)	critical splice donor site	probably null
R5389:Ptpn9	UTSW	9	56,964,121 (GRCm39)	intron	probably benign
R5422:Ptpn9	UTSW	9	56,940,441 (GRCm39)	missense	probably damaging	1.00
R5437:Ptpn9	UTSW	9	56,927,321 (GRCm39)	missense	possibly damaging	0.80
R6075:Ptpn9	UTSW	9	56,968,430 (GRCm39)	missense	probably benign	0.00
R6084:Ptpn9	UTSW	9	56,940,447 (GRCm39)	nonsense	probably null
R6481:Ptpn9	UTSW	9	56,930,324 (GRCm39)	missense	probably damaging	1.00
R7120:Ptpn9	UTSW	9	56,967,166 (GRCm39)	missense	probably damaging	1.00
R7194:Ptpn9	UTSW	9	56,929,570 (GRCm39)	missense	probably damaging	1.00
R7195:Ptpn9	UTSW	9	56,929,533 (GRCm39)	missense	probably benign	0.02
R7349:Ptpn9	UTSW	9	56,951,660 (GRCm39)	missense	probably benign	0.16
R7439:Ptpn9	UTSW	9	56,934,717 (GRCm39)	nonsense	probably null
R7441:Ptpn9	UTSW	9	56,934,717 (GRCm39)	nonsense	probably null
R7801:Ptpn9	UTSW	9	56,968,297 (GRCm39)	missense	probably benign	0.36
R7879:Ptpn9	UTSW	9	56,964,010 (GRCm39)	missense	possibly damaging	0.50
R7932:Ptpn9	UTSW	9	56,943,900 (GRCm39)	missense	possibly damaging	0.48
R9323:Ptpn9	UTSW	9	56,934,701 (GRCm39)	missense	possibly damaging	0.93
R9433:Ptpn9	UTSW	9	56,964,010 (GRCm39)	missense	possibly damaging	0.50
R9614:Ptpn9	UTSW	9	56,944,005 (GRCm39)	missense	probably benign	0.00

Posted On

2015-04-16