Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02553:Cstf1'

298548

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Cstf1

Ensembl Gene

ENSMUSG00000027498

Gene Name

cleavage stimulation factor, 3' pre-RNA, subunit 1

Synonyms

1700057K18Rik

Accession Numbers

Essential gene?

Probably essential (E-score: 0.964) question?

Stock #

IGL02553

Quality Score

Status

Chromosome

Chromosomal Location

172212601-172224368 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 172219774 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 295 (R295L)

Ref Sequence

ENSEMBL: ENSMUSP00000112076 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000116375] [ENSMUST00000151511]

AlphaFold

Q99LC2

Predicted Effect

probably benign
Transcript: ENSMUST00000116375
AA Change: R295L

PolyPhen 2 Score 0.194 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000112076
Gene: ENSMUSG00000027498
AA Change: R295L

Domain	Start	End	E-Value	Type
Pfam:CSTF1_dimer	6	62	5.4e-28	PFAM
WD40	97	136	2.61e-3	SMART
WD40	162	201	3.29e-9	SMART
WD40	206	245	6.88e0	SMART
WD40	248	290	9.02e-7	SMART
WD40	293	334	1.44e-5	SMART
Blast:WD40	337	382	8e-9	BLAST
WD40	385	425	2.49e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000151511

SMART Domains

Protein: ENSMUSP00000121178
Gene: ENSMUSG00000027498

Domain	Start	End	E-Value	Type
PDB:2XZ2\|A	8	59	2e-7	PDB
WD40	97	136	2.61e-3	SMART

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes one of three subunits which combine to form cleavage stimulation factor (CSTF). CSTF is involved in the polyadenylation and 3'end cleavage of pre-mRNAs. Similar to mammalian G protein beta subunits, this protein contains transducin-like repeats. Several transcript variants with different 5' UTR, but encoding the same protein, have been found for this gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc3	A	G	11: 94,242,750 (GRCm39)	S1326P	probably damaging	Het
Alpk1	A	T	3: 127,466,970 (GRCm39)	L1103Q	probably damaging	Het
Arhgap11a	A	C	2: 113,667,906 (GRCm39)		probably benign	Het
Arl6ip6	A	G	2: 53,082,226 (GRCm39)	Y31C	possibly damaging	Het
Arpin	G	T	7: 79,577,395 (GRCm39)	D217E	possibly damaging	Het
Atp13a4	C	T	16: 29,241,521 (GRCm39)	V735I	probably benign	Het
Ccdc146	A	T	5: 21,502,631 (GRCm39)	F753L	probably benign	Het
Cdh3	T	A	8: 107,270,880 (GRCm39)	L511*	probably null	Het
Chrna1	A	T	2: 73,397,206 (GRCm39)	I361N	possibly damaging	Het
Clk2	G	A	3: 89,083,020 (GRCm39)	R432H	probably damaging	Het
Col9a1	T	C	1: 24,261,018 (GRCm39)		probably benign	Het
Dsg2	A	G	18: 20,725,467 (GRCm39)	D526G	probably damaging	Het
Dsg4	T	A	18: 20,595,577 (GRCm39)	H593Q	probably benign	Het
Dysf	T	C	6: 84,107,109 (GRCm39)	Y1171H	possibly damaging	Het
Erbb4	A	G	1: 68,345,023 (GRCm39)	L566P	probably benign	Het
Fam185a	T	A	5: 21,660,829 (GRCm39)	D281E	probably damaging	Het
Fam185a	T	A	5: 21,634,839 (GRCm39)		probably benign	Het
Fam91a1	T	A	15: 58,304,831 (GRCm39)		probably null	Het
Fat2	A	G	11: 55,202,109 (GRCm39)	W322R	probably damaging	Het
Fbxw8	T	A	5: 118,204,125 (GRCm39)		probably benign	Het
Ganc	A	G	2: 120,288,615 (GRCm39)	T874A	probably benign	Het
Gm3543	T	C	14: 41,802,048 (GRCm39)	I145M	probably benign	Het
Gtf2i	G	A	5: 134,274,015 (GRCm39)	T712I	probably damaging	Het
Hk1	A	G	10: 62,131,552 (GRCm39)	S268P	possibly damaging	Het
Hmcn1	A	G	1: 150,868,774 (GRCm39)	V10A	probably benign	Het
Hsd17b4	C	T	18: 50,295,164 (GRCm39)		probably benign	Het
Ighv1-75	A	T	12: 115,797,725 (GRCm39)	W66R	probably damaging	Het
Kif21b	G	T	1: 136,081,859 (GRCm39)	D636Y	probably damaging	Het
Kif5b	A	T	18: 6,220,914 (GRCm39)	I398N	probably benign	Het
Metap2	T	C	10: 93,701,311 (GRCm39)	M165V	probably damaging	Het
Mterf2	A	C	10: 84,956,331 (GRCm39)	L98V	probably damaging	Het
Muc16	A	G	9: 18,409,849 (GRCm39)		probably null	Het
Myo3b	A	G	2: 69,925,568 (GRCm39)	M12V	probably benign	Het
Nat10	C	A	2: 103,583,013 (GRCm39)	R136I	probably damaging	Het
Nsd2	T	G	5: 34,003,542 (GRCm39)	S231A	probably damaging	Het
Or4a71	T	C	2: 89,358,275 (GRCm39)	T160A	probably benign	Het
Or4k37	A	T	2: 111,159,333 (GRCm39)	M190L	probably benign	Het
Pcdhb14	T	A	18: 37,581,071 (GRCm39)	L59*	probably null	Het
Pias4	A	G	10: 80,999,621 (GRCm39)	L144P	probably damaging	Het
Plxna2	T	A	1: 194,433,746 (GRCm39)	N598K	probably benign	Het
Polq	A	G	16: 36,862,130 (GRCm39)	Y550C	probably damaging	Het
Pot1b	T	A	17: 56,002,024 (GRCm39)		probably benign	Het
Proz	T	C	8: 13,115,260 (GRCm39)	V92A	probably benign	Het
Rab4a	T	C	8: 124,550,561 (GRCm39)	F14L	probably benign	Het
Riok3	T	A	18: 12,276,073 (GRCm39)	C256*	probably null	Het
Slc6a1	T	A	6: 114,279,451 (GRCm39)		probably benign	Het
Socs5	C	T	17: 87,442,419 (GRCm39)	T453M	probably damaging	Het
Spata3	T	C	1: 85,952,211 (GRCm39)	L135P	probably damaging	Het
Spata46	A	G	1: 170,139,534 (GRCm39)	K178E	probably damaging	Het
Spr	T	C	6: 85,114,430 (GRCm39)	N100D	probably damaging	Het
Srrm4	C	T	5: 116,582,624 (GRCm39)		probably benign	Het
Stard3	T	C	11: 98,267,389 (GRCm39)	F169S	possibly damaging	Het
Tbx1	T	A	16: 18,402,847 (GRCm39)	D222V	probably damaging	Het
Trbv23	C	T	6: 41,193,279 (GRCm39)	Q56*	probably null	Het
Tsc22d1	A	G	14: 76,654,838 (GRCm39)	N357S	possibly damaging	Het
Ugt1a6a	C	T	1: 88,066,811 (GRCm39)	P206S	probably benign	Het
Utp20	A	G	10: 88,600,657 (GRCm39)	V19A	probably damaging	Het
Vps13b	A	G	15: 35,646,447 (GRCm39)	N1517S	probably benign	Het
Washc2	T	C	6: 116,218,571 (GRCm39)	I672T	probably damaging	Het

Other mutations in Cstf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01658:Cstf1	APN	2	172,214,993 (GRCm39)	missense	probably benign	0.32
IGL02306:Cstf1	APN	2	172,214,891 (GRCm39)	missense	probably benign	0.02
IGL02756:Cstf1	APN	2	172,217,795 (GRCm39)	missense	probably damaging	1.00
R0066:Cstf1	UTSW	2	172,214,976 (GRCm39)	missense	probably benign	0.04
R0066:Cstf1	UTSW	2	172,214,976 (GRCm39)	missense	probably benign	0.04
R0244:Cstf1	UTSW	2	172,219,630 (GRCm39)	missense	possibly damaging	0.87
R1448:Cstf1	UTSW	2	172,217,795 (GRCm39)	missense	probably damaging	1.00
R1770:Cstf1	UTSW	2	172,214,983 (GRCm39)	missense	possibly damaging	0.59
R2055:Cstf1	UTSW	2	172,222,403 (GRCm39)	missense	probably benign	0.00
R2146:Cstf1	UTSW	2	172,217,683 (GRCm39)	missense	probably damaging	1.00
R3119:Cstf1	UTSW	2	172,214,990 (GRCm39)	missense	possibly damaging	0.75
R3701:Cstf1	UTSW	2	172,222,312 (GRCm39)	missense	probably benign	0.00
R4816:Cstf1	UTSW	2	172,214,905 (GRCm39)	missense	probably damaging	1.00
R4893:Cstf1	UTSW	2	172,222,444 (GRCm39)	missense	probably damaging	1.00
R4991:Cstf1	UTSW	2	172,219,720 (GRCm39)	missense	probably damaging	1.00
R4992:Cstf1	UTSW	2	172,219,720 (GRCm39)	missense	probably damaging	1.00
R5743:Cstf1	UTSW	2	172,219,753 (GRCm39)	missense	probably damaging	1.00
R6386:Cstf1	UTSW	2	172,219,816 (GRCm39)	missense	probably damaging	0.97
R7314:Cstf1	UTSW	2	172,214,954 (GRCm39)	missense	probably damaging	1.00
R7843:Cstf1	UTSW	2	172,219,920 (GRCm39)	missense	probably damaging	1.00
R8212:Cstf1	UTSW	2	172,219,872 (GRCm39)	missense	probably damaging	1.00
R8930:Cstf1	UTSW	2	172,217,623 (GRCm39)	missense	probably benign
R8932:Cstf1	UTSW	2	172,217,623 (GRCm39)	missense	probably benign
R9089:Cstf1	UTSW	2	172,217,807 (GRCm39)	missense
R9240:Cstf1	UTSW	2	172,217,669 (GRCm39)	missense	probably damaging	1.00
R9545:Cstf1	UTSW	2	172,212,885 (GRCm39)	intron	probably benign
R9610:Cstf1	UTSW	2	172,214,984 (GRCm39)	missense	probably benign	0.33
R9611:Cstf1	UTSW	2	172,214,984 (GRCm39)	missense	probably benign	0.33
X0026:Cstf1	UTSW	2	172,217,780 (GRCm39)	missense	probably damaging	1.00

Posted On

2015-04-16