Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02633:Limd1'

301382

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Limd1

Ensembl Gene

ENSMUSG00000025239

Gene Name

LIM domains containing 1

Synonyms

D9Ertd192e

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.382) question?

Stock #

IGL02633

Quality Score

Status

Chromosome

Chromosomal Location

123307771-123350617 bp(+) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to T at 123308987 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026269]

AlphaFold

Q9QXD8

Predicted Effect

unknown
Transcript: ENSMUST00000026269
AA Change: T229S

SMART Domains

Protein: ENSMUSP00000026269
Gene: ENSMUSG00000025239
AA Change: T229S

Domain	Start	End	E-Value	Type
low complexity region	57	67	N/A	INTRINSIC
low complexity region	238	252	N/A	INTRINSIC
LIM	463	516	2.17e-15	SMART
LIM	528	580	9.6e-17	SMART
LIM	588	649	2.26e-13	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216352

Predicted Effect

probably benign
Transcript: ENSMUST00000217639

Coding Region Coverage

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal basal bone osteoclast numbers and bone density but are resistant to physiological and pathologic osteoclastogenic stimuli. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 37 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abitram	T	C	4: 56,806,131 (GRCm39)	V181A	possibly damaging	Het
Aff4	T	C	11: 53,300,198 (GRCm39)		probably benign	Het
Ap1g2	T	C	14: 55,338,104 (GRCm39)		probably null	Het
Aspn	A	T	13: 49,705,363 (GRCm39)	Y75F	possibly damaging	Het
Atm	G	A	9: 53,359,453 (GRCm39)	T2783I	probably damaging	Het
Cacnb1	A	T	11: 97,913,199 (GRCm39)	I18N	probably damaging	Het
Casr	T	C	16: 36,336,017 (GRCm39)	I97M	probably damaging	Het
Cnga2	T	A	X: 71,048,655 (GRCm39)		probably benign	Het
Coasy	T	A	11: 100,976,147 (GRCm39)	L425Q	probably damaging	Het
Cps1	A	G	1: 67,162,396 (GRCm39)	T25A	probably benign	Het
Dnah1	T	C	14: 31,006,772 (GRCm39)	Y2181C	probably benign	Het
Efna3	A	C	3: 89,222,749 (GRCm39)	S230A	probably damaging	Het
Eng	A	G	2: 32,563,286 (GRCm39)	I281V	probably damaging	Het
Erlec1	T	A	11: 30,898,430 (GRCm39)	R14*	probably null	Het
Gbp9	C	T	5: 105,231,431 (GRCm39)		probably benign	Het
Gzmg	T	C	14: 56,394,160 (GRCm39)	M245V	probably damaging	Het
Kdm5a	A	G	6: 120,341,680 (GRCm39)	I36V	probably damaging	Het
Krt87	A	G	15: 101,389,095 (GRCm39)	V79A	probably damaging	Het
Lmo4	T	C	3: 143,899,683 (GRCm39)	S155G	probably benign	Het
Mrpl44	G	A	1: 79,753,862 (GRCm39)	V5I	probably benign	Het
Mrpl49	T	C	19: 6,104,931 (GRCm39)	T146A	possibly damaging	Het
Mrpl58	T	C	11: 115,301,457 (GRCm39)		probably benign	Het
Nab1	C	T	1: 52,529,292 (GRCm39)	V202M	probably damaging	Het
Nav3	T	A	10: 109,527,997 (GRCm39)	M2229L	probably benign	Het
Notch2	C	T	3: 98,024,013 (GRCm39)		probably benign	Het
Nub1	A	G	5: 24,897,931 (GRCm39)	I106V	probably benign	Het
Prom1	A	T	5: 44,172,117 (GRCm39)	S595T	probably benign	Het
Rbfox1	T	A	16: 7,110,078 (GRCm39)	S165R	probably damaging	Het
Sipa1l2	G	A	8: 126,174,507 (GRCm39)	T1257I	probably damaging	Het
Smarcc2	T	C	10: 128,305,556 (GRCm39)	S327P	probably damaging	Het
Tdpoz1	T	C	3: 93,578,056 (GRCm39)	M243V	probably benign	Het
Ttn	G	T	2: 76,549,289 (GRCm39)	T23469K	probably damaging	Het
Ube2u	T	C	4: 100,339,971 (GRCm39)		probably benign	Het
Umodl1	T	C	17: 31,208,462 (GRCm39)	Y836H	probably damaging	Het
Vmn2r45	A	G	7: 8,488,728 (GRCm39)	Y101H	probably benign	Het
Vps13a	T	A	19: 16,697,772 (GRCm39)	Q781L	possibly damaging	Het
Vwce	G	A	19: 10,625,858 (GRCm39)	V457M	probably damaging	Het

Other mutations in Limd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00953:Limd1	APN	9	123,308,948 (GRCm39)	missense	probably benign	0.31
IGL00972:Limd1	APN	9	123,309,141 (GRCm39)	missense	probably benign	0.06
IGL01815:Limd1	APN	9	123,308,801 (GRCm39)	missense	probably benign	0.01
IGL02598:Limd1	APN	9	123,309,236 (GRCm39)	missense	probably benign
IGL02598:Limd1	APN	9	123,345,933 (GRCm39)	missense	probably benign	0.11
IGL02999:Limd1	APN	9	123,345,864 (GRCm39)	missense	probably damaging	1.00
R0314:Limd1	UTSW	9	123,345,892 (GRCm39)	missense	probably benign	0.04
R1612:Limd1	UTSW	9	123,347,219 (GRCm39)	missense	probably damaging	1.00
R2009:Limd1	UTSW	9	123,308,564 (GRCm39)	missense	probably benign
R2299:Limd1	UTSW	9	123,345,942 (GRCm39)	nonsense	probably null
R3791:Limd1	UTSW	9	123,309,439 (GRCm39)	missense	possibly damaging	0.92
R4453:Limd1	UTSW	9	123,309,359 (GRCm39)	missense	possibly damaging	0.52
R5979:Limd1	UTSW	9	123,308,479 (GRCm39)	missense	possibly damaging	0.96
R7493:Limd1	UTSW	9	123,308,748 (GRCm39)	missense	probably benign	0.00
R8101:Limd1	UTSW	9	123,329,216 (GRCm39)	nonsense	probably null
R8332:Limd1	UTSW	9	123,308,319 (GRCm39)	missense	probably damaging	1.00
R9060:Limd1	UTSW	9	123,309,514 (GRCm39)	missense	probably benign	0.08
R9679:Limd1	UTSW	9	123,308,457 (GRCm39)	missense	probably damaging	1.00
R9681:Limd1	UTSW	9	123,345,903 (GRCm39)	missense	possibly damaging	0.48
R9726:Limd1	UTSW	9	123,308,984 (GRCm39)	missense	probably benign	0.00
X0028:Limd1	UTSW	9	123,345,927 (GRCm39)	missense	probably damaging	0.99
Z1177:Limd1	UTSW	9	123,309,086 (GRCm39)	missense	probably damaging	0.99

Posted On

2015-04-16