Incidental Mutation 'IGL02684:Lratd1'
ID 303469
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Lratd1
Ensembl Gene ENSMUSG00000020607
Gene Name LRAT domain containing 1
Synonyms Fam84a, 4731402F03Rik, 2310003N02Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.114) question?
Stock # IGL02684
Quality Score
Status
Chromosome 12
Chromosomal Location 14197599-14202039 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 14200646 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 27 (D27G)
Ref Sequence ENSEMBL: ENSMUSP00000020926 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000020926] [ENSMUST00000221405]
AlphaFold no structure available at present
Predicted Effect probably damaging
Transcript: ENSMUST00000020926
AA Change: D27G

PolyPhen 2 Score 0.973 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000020926
Gene: ENSMUSG00000020607
AA Change: D27G

DomainStartEndE-ValueType
low complexity region 57 69 N/A INTRINSIC
low complexity region 71 81 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000221405
AA Change: D27G

PolyPhen 2 Score 0.393 (Sensitivity: 0.90; Specificity: 0.89)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930596D02Rik A T 14: 35,532,020 (GRCm39) L185* probably null Het
Aadacl4fm5 A G 4: 144,504,755 (GRCm39) probably benign Het
Actrt3 A T 3: 30,653,840 (GRCm39) D53E probably benign Het
Ankrd34b T C 13: 92,575,016 (GRCm39) S83P probably damaging Het
Asap1 A G 15: 63,966,018 (GRCm39) V1029A probably benign Het
Blk T C 14: 63,617,143 (GRCm39) E288G probably benign Het
Cep192 T G 18: 67,967,634 (GRCm39) V706G probably damaging Het
Chd2 T C 7: 73,125,097 (GRCm39) K908E probably damaging Het
Dnm1l A T 16: 16,139,521 (GRCm39) I391N possibly damaging Het
Fmn1 A G 2: 113,355,622 (GRCm39) R688G unknown Het
Gdap2 A G 3: 100,078,336 (GRCm39) D100G probably benign Het
Gm43638 T C 5: 87,610,769 (GRCm39) I522V possibly damaging Het
Gsap A T 5: 21,447,801 (GRCm39) probably null Het
Hoxd12 A G 2: 74,505,905 (GRCm39) S159G probably benign Het
Ints7 A G 1: 191,345,749 (GRCm39) probably null Het
Iqsec3 G A 6: 121,389,900 (GRCm39) Q524* probably null Het
Klra10 T A 6: 130,258,845 (GRCm39) H14L possibly damaging Het
Mettl15 T C 2: 108,961,925 (GRCm39) E228G probably damaging Het
Or51v8 T C 7: 103,319,591 (GRCm39) M216V probably benign Het
Or9s18 G A 13: 65,300,210 (GRCm39) M57I probably damaging Het
Pabpc1l A G 2: 163,873,197 (GRCm39) N156D probably benign Het
Pkhd1l1 G T 15: 44,379,605 (GRCm39) probably null Het
Pm20d1 T A 1: 131,732,697 (GRCm39) N345K probably benign Het
Rasgrp1 A G 2: 117,113,057 (GRCm39) V785A probably benign Het
Sos2 A G 12: 69,643,440 (GRCm39) L980S probably damaging Het
Stam2 A T 2: 52,609,947 (GRCm39) H56Q probably damaging Het
Trpm6 T A 19: 18,779,571 (GRCm39) probably benign Het
Trpm7 A T 2: 126,688,079 (GRCm39) D249E probably damaging Het
Vmn1r203 A T 13: 22,708,539 (GRCm39) T107S possibly damaging Het
Vmn2r55 A G 7: 12,404,887 (GRCm39) L172P probably damaging Het
Vrtn A G 12: 84,696,923 (GRCm39) R558G probably benign Het
Zfp977 A T 7: 42,232,439 (GRCm39) D7E probably damaging Het
Other mutations in Lratd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00910:Lratd1 APN 12 14,200,527 (GRCm39) missense probably benign 0.14
IGL01446:Lratd1 APN 12 14,199,929 (GRCm39) missense probably damaging 1.00
Grade UTSW 12 14,199,864 (GRCm39) missense probably damaging 0.99
R1514:Lratd1 UTSW 12 14,199,864 (GRCm39) missense probably damaging 0.99
R1583:Lratd1 UTSW 12 14,200,409 (GRCm39) missense probably benign 0.25
R1800:Lratd1 UTSW 12 14,200,226 (GRCm39) missense probably damaging 0.98
R6074:Lratd1 UTSW 12 14,200,512 (GRCm39) missense probably benign 0.06
R6259:Lratd1 UTSW 12 14,200,646 (GRCm39) missense probably damaging 0.99
R7169:Lratd1 UTSW 12 14,200,619 (GRCm39) missense probably damaging 0.99
R9239:Lratd1 UTSW 12 14,200,185 (GRCm39) missense probably damaging 1.00
R9649:Lratd1 UTSW 12 14,200,190 (GRCm39) missense probably benign
Posted On 2015-04-16