Incidental Mutation 'IGL02690:Tent4a'
| ID |
303686 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Tent4a
|
| Ensembl Gene |
ENSMUSG00000034575 |
| Gene Name |
terminal nucleotidyltransferase 4A |
| Synonyms |
TRF4, Pols, TRF4-1, Papd7, LAK-1 |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.177)
|
| Stock # |
IGL02690
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
13 |
| Chromosomal Location |
69646071-69682710 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 69658744 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Leucine
at position 364
(M364L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000142516
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000044081]
[ENSMUST00000198607]
[ENSMUST00000223344]
|
| AlphaFold |
Q6PB75 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000044081
AA Change: M121L
PolyPhen 2
Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
|
| SMART Domains |
Protein: ENSMUSP00000040757
Gene: ENSMUSG00000034575
AA Change: M121L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:NTP_transf_2
|
15 |
124 |
4.1e-20 |
PFAM |
|
Pfam:PAP_assoc
|
178 |
238 |
5.4e-19 |
PFAM |
|
low complexity region
|
343 |
368 |
N/A |
INTRINSIC |
|
low complexity region
|
496 |
505 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000198607
AA Change: M364L
PolyPhen 2
Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000142516
Gene: ENSMUSG00000034575
AA Change: M364L
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
46 |
98 |
N/A |
INTRINSIC |
|
low complexity region
|
106 |
118 |
N/A |
INTRINSIC |
|
low complexity region
|
122 |
145 |
N/A |
INTRINSIC |
|
low complexity region
|
206 |
220 |
N/A |
INTRINSIC |
|
Pfam:NTP_transf_2
|
258 |
368 |
1.6e-14 |
PFAM |
|
Pfam:PAP_assoc
|
421 |
481 |
8.3e-16 |
PFAM |
|
low complexity region
|
586 |
611 |
N/A |
INTRINSIC |
|
low complexity region
|
739 |
748 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000221578
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000223344
AA Change: M121L
PolyPhen 2
Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a DNA polymerase that is likely involved in DNA repair. In addition, the encoded protein may be required for sister chromatid adhesion. Alternatively spliced transcript variants that encode different isoforms have been described. [provided by RefSeq, Jan 2010]
|
| Allele List at MGI |
All alleles(5) : Targeted(4) Gene trapped(1)
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adgre1 |
T |
C |
17: 57,787,921 (GRCm39) |
V896A |
probably damaging |
Het |
| Ahnak |
C |
A |
19: 8,989,948 (GRCm39) |
S3744* |
probably null |
Het |
| Aldh7a1 |
A |
G |
18: 56,661,427 (GRCm39) |
|
probably benign |
Het |
| Ankk1 |
T |
A |
9: 49,333,200 (GRCm39) |
I95F |
probably damaging |
Het |
| Borcs8 |
C |
A |
8: 70,617,738 (GRCm39) |
A32D |
probably damaging |
Het |
| Ccn3 |
A |
G |
15: 54,611,198 (GRCm39) |
Y111C |
probably damaging |
Het |
| Cdh1 |
T |
A |
8: 107,384,516 (GRCm39) |
I328N |
probably damaging |
Het |
| Cebpz |
C |
T |
17: 79,229,986 (GRCm39) |
D856N |
probably damaging |
Het |
| Clip2 |
T |
A |
5: 134,539,013 (GRCm39) |
|
probably benign |
Het |
| Dock7 |
C |
A |
4: 98,857,872 (GRCm39) |
V1451F |
possibly damaging |
Het |
| Edem3 |
T |
G |
1: 151,680,550 (GRCm39) |
C558W |
probably damaging |
Het |
| Eif3f |
T |
C |
7: 108,533,925 (GRCm39) |
V96A |
probably damaging |
Het |
| Gen1 |
A |
G |
12: 11,291,576 (GRCm39) |
S738P |
probably damaging |
Het |
| Ipo8 |
A |
T |
6: 148,678,861 (GRCm39) |
S912R |
probably benign |
Het |
| Kcp |
G |
T |
6: 29,484,998 (GRCm39) |
|
probably benign |
Het |
| Larp7-ps |
T |
A |
4: 92,079,248 (GRCm39) |
D191V |
probably damaging |
Het |
| Lrrfip1 |
A |
G |
1: 90,981,383 (GRCm39) |
T2A |
probably damaging |
Het |
| Lyst |
A |
G |
13: 13,815,710 (GRCm39) |
E1198G |
possibly damaging |
Het |
| Maml1 |
A |
G |
11: 50,149,457 (GRCm39) |
L761P |
probably damaging |
Het |
| Mon2 |
T |
A |
10: 122,845,532 (GRCm39) |
E1392V |
possibly damaging |
Het |
| Nol12 |
A |
G |
15: 78,821,374 (GRCm39) |
E78G |
probably damaging |
Het |
| Or13c7b |
G |
A |
4: 43,821,190 (GRCm39) |
T57M |
possibly damaging |
Het |
| Or5k17 |
G |
A |
16: 58,746,214 (GRCm39) |
T240I |
possibly damaging |
Het |
| Rag2 |
A |
T |
2: 101,459,839 (GRCm39) |
I50L |
probably benign |
Het |
| Rasgrf2 |
T |
C |
13: 92,167,273 (GRCm39) |
N267D |
probably damaging |
Het |
| Rnf123 |
G |
A |
9: 107,945,501 (GRCm39) |
R390* |
probably null |
Het |
| Rsc1a1 |
A |
T |
4: 141,412,612 (GRCm39) |
V100D |
probably damaging |
Het |
| Rtp1 |
T |
C |
16: 23,250,132 (GRCm39) |
Y166H |
probably damaging |
Het |
| Scly |
A |
T |
1: 91,233,047 (GRCm39) |
T109S |
probably benign |
Het |
| Scn8a |
A |
T |
15: 100,868,135 (GRCm39) |
S327C |
probably damaging |
Het |
| Sgsm1 |
T |
C |
5: 113,434,633 (GRCm39) |
|
probably benign |
Het |
| Slc4a9 |
A |
G |
18: 36,665,040 (GRCm39) |
Y463C |
probably damaging |
Het |
| Speer1j |
C |
T |
5: 11,555,228 (GRCm39) |
Q66* |
probably null |
Het |
| Sptan1 |
A |
G |
2: 29,888,195 (GRCm39) |
M936V |
possibly damaging |
Het |
| Srrm1 |
G |
A |
4: 135,052,415 (GRCm39) |
P658L |
unknown |
Het |
| Tbx20 |
T |
A |
9: 24,685,033 (GRCm39) |
N37Y |
probably benign |
Het |
| Tex14 |
C |
T |
11: 87,377,100 (GRCm39) |
T148I |
probably benign |
Het |
| Ubxn7 |
A |
G |
16: 32,200,423 (GRCm39) |
E371G |
probably benign |
Het |
| Ugt2b35 |
T |
C |
5: 87,149,096 (GRCm39) |
F116L |
probably benign |
Het |
| Vmn2r111 |
C |
T |
17: 22,778,023 (GRCm39) |
|
probably null |
Het |
| Vmn2r26 |
T |
C |
6: 124,003,091 (GRCm39) |
L167P |
probably benign |
Het |
| Vps13b |
T |
C |
15: 35,917,288 (GRCm39) |
W3711R |
probably damaging |
Het |
| Wdr5 |
A |
T |
2: 27,424,840 (GRCm39) |
T326S |
probably benign |
Het |
|
| Other mutations in Tent4a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01537:Tent4a
|
APN |
13 |
69,648,678 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL03047:Tent4a
|
UTSW |
13 |
69,651,030 (GRCm39) |
missense |
probably damaging |
1.00 |
|
P0027:Tent4a
|
UTSW |
13 |
69,655,074 (GRCm39) |
nonsense |
probably null |
|
|
R0309:Tent4a
|
UTSW |
13 |
69,648,051 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R1713:Tent4a
|
UTSW |
13 |
69,651,170 (GRCm39) |
missense |
probably benign |
0.10 |
|
R2936:Tent4a
|
UTSW |
13 |
69,650,446 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R3809:Tent4a
|
UTSW |
13 |
69,661,115 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4927:Tent4a
|
UTSW |
13 |
69,651,019 (GRCm39) |
splice site |
probably null |
|
|
R6419:Tent4a
|
UTSW |
13 |
69,658,785 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R7011:Tent4a
|
UTSW |
13 |
69,648,199 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7505:Tent4a
|
UTSW |
13 |
69,655,047 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7547:Tent4a
|
UTSW |
13 |
69,681,823 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7554:Tent4a
|
UTSW |
13 |
69,648,191 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8040:Tent4a
|
UTSW |
13 |
69,648,600 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8124:Tent4a
|
UTSW |
13 |
69,681,716 (GRCm39) |
unclassified |
probably benign |
|
|
R8777:Tent4a
|
UTSW |
13 |
69,658,824 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8777-TAIL:Tent4a
|
UTSW |
13 |
69,658,824 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8919:Tent4a
|
UTSW |
13 |
69,651,828 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R9175:Tent4a
|
UTSW |
13 |
69,663,915 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9517:Tent4a
|
UTSW |
13 |
69,655,059 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9624:Tent4a
|
UTSW |
13 |
69,651,787 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9688:Tent4a
|
UTSW |
13 |
69,655,199 (GRCm39) |
missense |
probably damaging |
1.00 |
|
RF027:Tent4a
|
UTSW |
13 |
69,681,973 (GRCm39) |
unclassified |
probably benign |
|
|
RF039:Tent4a
|
UTSW |
13 |
69,681,973 (GRCm39) |
unclassified |
probably benign |
|
|
T0722:Tent4a
|
UTSW |
13 |
69,655,074 (GRCm39) |
nonsense |
probably null |
|
|
Z1177:Tent4a
|
UTSW |
13 |
69,651,753 (GRCm39) |
critical splice donor site |
probably null |
|
|
| Posted On |
2015-04-16 |
Incidental Mutation