Incidental Mutation 'IGL02718:Syt10'
ID 304864
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Syt10
Ensembl Gene ENSMUSG00000063260
Gene Name synaptotagmin X
Synonyms
Accession Numbers
Essential gene? Probably non essential (E-score: 0.081) question?
Stock # IGL02718
Quality Score
Status
Chromosome 15
Chromosomal Location 89666596-89726063 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 89698282 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Threonine at position 354 (I354T)
Ref Sequence ENSEMBL: ENSMUSP00000029441 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000029441]
AlphaFold Q9R0N4
Predicted Effect probably damaging
Transcript: ENSMUST00000029441
AA Change: I354T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000029441
Gene: ENSMUSG00000063260
AA Change: I354T

DomainStartEndE-ValueType
transmembrane domain 55 77 N/A INTRINSIC
low complexity region 105 126 N/A INTRINSIC
C2 247 350 1.22e-19 SMART
C2 379 493 7.73e-22 SMART
Coding Region Coverage
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-in allele exhibit minor circadian rhythm impairments. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2200002J24Rik A G 7: 30,399,329 (GRCm39) D41G probably damaging Het
2210408I21Rik T A 13: 77,322,991 (GRCm39) Y7N probably damaging Het
Atf1 C A 15: 100,152,100 (GRCm39) Q151K probably damaging Het
Brdt T C 5: 107,497,934 (GRCm39) probably benign Het
Cep295 T C 9: 15,237,049 (GRCm39) probably null Het
Ctnnd2 A G 15: 31,027,762 (GRCm39) S1229G probably damaging Het
Dcaf15 T A 8: 84,825,005 (GRCm39) I476L possibly damaging Het
Dlec1 A G 9: 118,966,354 (GRCm39) I1108V probably benign Het
Dnah9 T A 11: 65,777,466 (GRCm39) H3694L probably damaging Het
Dock10 A T 1: 80,501,535 (GRCm39) D1838E probably benign Het
Dusp12 A T 1: 170,708,226 (GRCm39) Y164N probably damaging Het
Ephx1 A G 1: 180,827,351 (GRCm39) F101L probably damaging Het
Fbn1 C A 2: 125,211,806 (GRCm39) C864F probably damaging Het
Fbxw24 T C 9: 109,453,858 (GRCm39) E96G possibly damaging Het
Glt1d1 C A 5: 127,727,763 (GRCm39) F78L probably damaging Het
Gm9602 A T 14: 15,932,620 (GRCm39) R21* probably null Het
Grip1 T A 10: 119,911,420 (GRCm39) *713K probably null Het
Hecw1 T C 13: 14,481,520 (GRCm39) probably null Het
Il31ra G A 13: 112,666,903 (GRCm39) R392* probably null Het
L3hypdh T G 12: 72,131,630 (GRCm39) S101R probably damaging Het
Lpar5 T A 6: 125,059,207 (GRCm39) D309E probably damaging Het
Masp1 T C 16: 23,295,043 (GRCm39) Y406C probably damaging Het
Mpdz T C 4: 81,303,439 (GRCm39) I166M probably damaging Het
Nbea A T 3: 55,539,483 (GRCm39) Y2759* probably null Het
Ncf1 A T 5: 134,256,302 (GRCm39) probably null Het
Nek5 T G 8: 22,587,479 (GRCm39) R314S probably benign Het
Nifk A C 1: 118,255,362 (GRCm39) N38T probably damaging Het
Obscn C T 11: 58,968,684 (GRCm39) V2772M probably damaging Het
Or10g9 A T 9: 39,912,182 (GRCm39) Y114N probably damaging Het
Or10z1 G T 1: 174,078,273 (GRCm39) Y73* probably null Het
Or2b28 T C 13: 21,531,554 (GRCm39) L152P probably damaging Het
Or2d3 A T 7: 106,490,536 (GRCm39) M260K probably damaging Het
Or52r1c C A 7: 102,734,790 (GRCm39) L22I probably benign Het
Or5k17 T C 16: 58,746,459 (GRCm39) I158M possibly damaging Het
Pbxip1 A G 3: 89,355,311 (GRCm39) E610G probably damaging Het
Pfas G T 11: 68,890,971 (GRCm39) probably benign Het
Plk4 T C 3: 40,769,456 (GRCm39) S102P probably damaging Het
Ptprz1 C T 6: 23,001,348 (GRCm39) T1146I possibly damaging Het
Pum2 T A 12: 8,783,344 (GRCm39) S598T probably benign Het
Ric1 T A 19: 29,510,640 (GRCm39) W74R probably damaging Het
Riok3 C A 18: 12,286,053 (GRCm39) S427* probably null Het
Ros1 A T 10: 51,994,328 (GRCm39) D1317E probably damaging Het
Sfmbt2 A G 2: 10,406,842 (GRCm39) D47G possibly damaging Het
Slc12a1 C T 2: 125,002,999 (GRCm39) R177* probably null Het
Snai3 C A 8: 123,182,861 (GRCm39) probably null Het
Snx19 A G 9: 30,343,556 (GRCm39) N572S possibly damaging Het
Soat1 A T 1: 156,268,999 (GRCm39) S151T probably benign Het
Spmip4 G T 6: 50,561,367 (GRCm39) T184K probably damaging Het
Stbd1 A G 5: 92,751,077 (GRCm39) E37G possibly damaging Het
Trip11 A C 12: 101,852,284 (GRCm39) S593R probably benign Het
Ubr1 T C 2: 120,745,364 (GRCm39) E908G probably damaging Het
Yy1 T C 12: 108,781,405 (GRCm39) F357L probably damaging Het
Other mutations in Syt10
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02976:Syt10 APN 15 89,698,682 (GRCm39) missense probably benign 0.26
R0200:Syt10 UTSW 15 89,711,144 (GRCm39) missense probably benign 0.01
R0306:Syt10 UTSW 15 89,711,191 (GRCm39) missense probably benign 0.02
R0580:Syt10 UTSW 15 89,711,379 (GRCm39) missense probably benign 0.15
R0608:Syt10 UTSW 15 89,711,144 (GRCm39) missense probably benign 0.01
R1705:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R1706:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R1921:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R1922:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R2072:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R2074:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R2119:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R2120:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R2121:Syt10 UTSW 15 89,674,979 (GRCm39) missense probably damaging 1.00
R3812:Syt10 UTSW 15 89,675,000 (GRCm39) missense probably benign
R4029:Syt10 UTSW 15 89,698,741 (GRCm39) missense probably benign
R4270:Syt10 UTSW 15 89,675,095 (GRCm39) missense probably benign 0.39
R4536:Syt10 UTSW 15 89,666,825 (GRCm39) missense probably damaging 0.99
R5333:Syt10 UTSW 15 89,725,932 (GRCm39) missense probably benign 0.00
R6042:Syt10 UTSW 15 89,725,824 (GRCm39) missense probably benign 0.13
R6104:Syt10 UTSW 15 89,711,067 (GRCm39) missense probably benign 0.02
R6445:Syt10 UTSW 15 89,698,471 (GRCm39) missense probably damaging 1.00
R6470:Syt10 UTSW 15 89,676,804 (GRCm39) missense probably damaging 1.00
R6472:Syt10 UTSW 15 89,698,761 (GRCm39) missense probably benign
R6679:Syt10 UTSW 15 89,698,574 (GRCm39) missense probably damaging 1.00
R7048:Syt10 UTSW 15 89,675,008 (GRCm39) missense probably damaging 1.00
R7128:Syt10 UTSW 15 89,698,314 (GRCm39) missense probably damaging 1.00
R7315:Syt10 UTSW 15 89,698,541 (GRCm39) missense probably damaging 0.99
R7352:Syt10 UTSW 15 89,698,659 (GRCm39) missense probably benign 0.42
R7686:Syt10 UTSW 15 89,698,360 (GRCm39) missense probably damaging 1.00
R7789:Syt10 UTSW 15 89,711,101 (GRCm39) missense probably damaging 1.00
R7937:Syt10 UTSW 15 89,666,820 (GRCm39) missense probably damaging 1.00
R8532:Syt10 UTSW 15 89,676,889 (GRCm39) missense probably damaging 1.00
R9578:Syt10 UTSW 15 89,675,122 (GRCm39) missense possibly damaging 0.80
R9668:Syt10 UTSW 15 89,711,135 (GRCm39) missense probably damaging 1.00
X0057:Syt10 UTSW 15 89,711,131 (GRCm39) missense probably damaging 1.00
Z1088:Syt10 UTSW 15 89,725,842 (GRCm39) missense probably benign
Posted On 2015-04-16