Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02746:Lzts3'

306047

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Lzts3

Ensembl Gene

ENSMUSG00000037703

Gene Name

leucine zipper, putative tumor suppressor family member 3

Synonyms

Prosapip1

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.206) question?

Stock #

IGL02746

Quality Score

Status

Chromosome

Chromosomal Location

130474759-130484723 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 130478261 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 165 (N165S)

Ref Sequence

ENSEMBL: ENSMUSP00000105889 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045761] [ENSMUST00000089561] [ENSMUST00000110260]

AlphaFold

A2AHG0

Predicted Effect

probably damaging
Transcript: ENSMUST00000045761
AA Change: N279S

PolyPhen 2 Score 0.966 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000037109
Gene: ENSMUSG00000037703
AA Change: N279S

Domain	Start	End	E-Value	Type
low complexity region	86	107	N/A	INTRINSIC
low complexity region	147	158	N/A	INTRINSIC
low complexity region	240	250	N/A	INTRINSIC
low complexity region	253	265	N/A	INTRINSIC
low complexity region	285	297	N/A	INTRINSIC
low complexity region	301	333	N/A	INTRINSIC
low complexity region	337	346	N/A	INTRINSIC
low complexity region	349	361	N/A	INTRINSIC
low complexity region	402	436	N/A	INTRINSIC
Pfam:Fez1	465	665	1.4e-62	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000089561
AA Change: N279S

PolyPhen 2 Score 0.966 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000086990
Gene: ENSMUSG00000037703
AA Change: N279S

Domain	Start	End	E-Value	Type
low complexity region	86	107	N/A	INTRINSIC
low complexity region	147	158	N/A	INTRINSIC
low complexity region	240	250	N/A	INTRINSIC
low complexity region	253	265	N/A	INTRINSIC
low complexity region	285	297	N/A	INTRINSIC
low complexity region	301	333	N/A	INTRINSIC
low complexity region	337	346	N/A	INTRINSIC
low complexity region	349	361	N/A	INTRINSIC
low complexity region	402	436	N/A	INTRINSIC
Pfam:Fez1	465	666	2.1e-74	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000110260
AA Change: N165S

PolyPhen 2 Score 0.984 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000105889
Gene: ENSMUSG00000037703
AA Change: N165S

Domain	Start	End	E-Value	Type
low complexity region	126	136	N/A	INTRINSIC
low complexity region	139	151	N/A	INTRINSIC
low complexity region	171	183	N/A	INTRINSIC
low complexity region	187	219	N/A	INTRINSIC
low complexity region	223	232	N/A	INTRINSIC
low complexity region	235	247	N/A	INTRINSIC
low complexity region	288	322	N/A	INTRINSIC
Pfam:Fez1	351	552	1.5e-74	PFAM

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 38 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	G	A	6: 121,646,462 (GRCm39)		probably benign	Het
Adck5	A	T	15: 76,473,354 (GRCm39)	M68L	probably benign	Het
Aox3	T	C	1: 58,222,701 (GRCm39)	S1165P	possibly damaging	Het
Arhgap23	A	G	11: 97,345,030 (GRCm39)		probably benign	Het
Brdt	T	C	5: 107,518,190 (GRCm39)	L771P	probably benign	Het
Ccdc134	T	A	15: 82,015,938 (GRCm39)		probably benign	Het
Cdc42bpa	T	A	1: 179,939,312 (GRCm39)	D41E	possibly damaging	Het
Cdkn2aipnl	A	G	11: 51,861,047 (GRCm39)	T106A	probably damaging	Het
Cox10	G	A	11: 63,855,357 (GRCm39)		probably benign	Het
Cubn	C	A	2: 13,449,851 (GRCm39)	C891F	probably damaging	Het
Cyb5rl	A	G	4: 106,925,836 (GRCm39)	E6G	probably benign	Het
Dhrs2	T	C	14: 55,478,628 (GRCm39)	S258P	probably damaging	Het
Dnah10	T	C	5: 124,807,150 (GRCm39)	L145P	possibly damaging	Het
Epc1	A	G	18: 6,454,317 (GRCm39)	I129T	probably benign	Het
Gkn3	A	G	6: 87,364,339 (GRCm39)		probably benign	Het
Gls2	A	G	10: 128,036,825 (GRCm39)	D202G	probably damaging	Het
Gm45844	A	G	7: 7,243,178 (GRCm39)	F24S	probably damaging	Het
Golph3	C	T	15: 12,349,501 (GRCm39)	R174W	probably damaging	Het
Gpatch4	A	C	3: 87,961,698 (GRCm39)	E119A	possibly damaging	Het
Hemgn	A	G	4: 46,400,740 (GRCm39)	L40P	probably damaging	Het
Ifi27l2b	A	T	12: 103,417,493 (GRCm39)	D231E	unknown	Het
Klf12	T	C	14: 100,137,656 (GRCm39)	I297V	probably benign	Het
Nlrp4e	G	A	7: 23,021,264 (GRCm39)	V584I	probably benign	Het
Npas4	T	C	19: 5,036,695 (GRCm39)	T490A	probably damaging	Het
Pikfyve	C	A	1: 65,273,431 (GRCm39)	H615Q	probably damaging	Het
Plce1	T	A	19: 38,686,916 (GRCm39)	L608Q	probably damaging	Het
Pou2f3	T	G	9: 43,058,143 (GRCm39)	Q67H	probably benign	Het
Rev3l	T	C	10: 39,700,585 (GRCm39)	L1694P	probably damaging	Het
Rpl4	A	G	9: 64,082,932 (GRCm39)	T117A	probably benign	Het
Scn5a	T	C	9: 119,379,703 (GRCm39)	N194D	probably damaging	Het
Sec16b	T	A	1: 157,373,859 (GRCm39)		probably benign	Het
Slc12a5	A	T	2: 164,816,836 (GRCm39)	M97L	probably benign	Het
Stard13	A	G	5: 150,970,322 (GRCm39)		probably benign	Het
Stau1	A	C	2: 166,796,818 (GRCm39)		probably null	Het
Thg1l	A	T	11: 45,839,054 (GRCm39)	C219*	probably null	Het
Togaram1	G	T	12: 65,013,270 (GRCm39)	E174*	probably null	Het
Vmn1r237	T	C	17: 21,534,480 (GRCm39)	S68P	possibly damaging	Het
Vmn2r3	A	T	3: 64,167,239 (GRCm39)	S631T	possibly damaging	Het

Other mutations in Lzts3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01072:Lzts3	APN	2	130,477,365 (GRCm39)	missense	probably damaging	0.99
IGL01541:Lzts3	APN	2	130,478,126 (GRCm39)	missense	probably damaging	0.99
IGL01649:Lzts3	APN	2	130,477,351 (GRCm39)	missense	probably damaging	0.98
IGL02927:Lzts3	APN	2	130,479,877 (GRCm39)	utr 5 prime	probably benign
R0069:Lzts3	UTSW	2	130,478,460 (GRCm39)	missense	probably benign	0.16
R0069:Lzts3	UTSW	2	130,478,460 (GRCm39)	missense	probably benign	0.16
R0173:Lzts3	UTSW	2	130,476,688 (GRCm39)	makesense	probably null
R1381:Lzts3	UTSW	2	130,477,219 (GRCm39)	missense	probably damaging	0.99
R4127:Lzts3	UTSW	2	130,477,285 (GRCm39)	missense	probably damaging	0.99
R4301:Lzts3	UTSW	2	130,478,358 (GRCm39)	missense	probably damaging	0.99
R4588:Lzts3	UTSW	2	130,476,686 (GRCm39)	makesense	probably null
R5289:Lzts3	UTSW	2	130,478,021 (GRCm39)	missense	probably benign	0.18
R5878:Lzts3	UTSW	2	130,478,459 (GRCm39)	missense	probably damaging	1.00
R5964:Lzts3	UTSW	2	130,478,208 (GRCm39)	missense	probably damaging	0.99
R6193:Lzts3	UTSW	2	130,479,306 (GRCm39)	missense	probably damaging	0.97
R7692:Lzts3	UTSW	2	130,477,306 (GRCm39)	missense	probably benign	0.27
R8195:Lzts3	UTSW	2	130,477,105 (GRCm39)	missense	probably benign	0.01
R8273:Lzts3	UTSW	2	130,476,801 (GRCm39)	missense	possibly damaging	0.66
R9126:Lzts3	UTSW	2	130,477,248 (GRCm39)	missense	possibly damaging	0.66
R9129:Lzts3	UTSW	2	130,476,865 (GRCm39)	missense	possibly damaging	0.92

Posted On

2015-04-16