Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02754:Cdyl'

306370

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Cdyl

Ensembl Gene

ENSMUSG00000059288

Gene Name

chromodomain protein, Y chromosome-like

Synonyms

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.577) question?

Stock #

IGL02754

Quality Score

Status

Chromosome

Chromosomal Location

35843816-36058046 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 35867725 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000153274 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000075220] [ENSMUST00000225602]

AlphaFold

Q9WTK2

Predicted Effect

probably benign
Transcript: ENSMUST00000075220

SMART Domains

Protein: ENSMUSP00000074707
Gene: ENSMUSG00000059288

Domain	Start	End	E-Value	Type
CHROMO	55	109	2.06e-18	SMART
low complexity region	116	129	N/A	INTRINSIC
Pfam:ECH_1	342	593	1.8e-35	PFAM
Pfam:ECH_2	348	592	6e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000225602

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Chromodomain Y is a primate-specific Y-chromosomal gene family expressed exclusively in the testis and implicated in infertility. Although the Y-linked genes are testis-specific, this autosomal gene is ubiquitously expressed. The Y-linked genes arose by retrotransposition of an mRNA from this gene, followed by amplification of the retroposed gene. Proteins encoded by this gene superfamily possess a chromodomain, a motif implicated in chromatin binding and gene suppression, and a catalytic domain believed to be involved in histone acetylation. Multiple proteins are encoded by transcript variants of this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Conditional homozygous knockout in the cerebral cortex affects neuronal migration and results in increased susceptibility to pharmacologically induced seizures. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
AW551984	T	A	9: 39,507,922 (GRCm39)	R405*	probably null	Het
AW551984	C	T	9: 39,504,624 (GRCm39)		probably null	Het
Bdp1	T	C	13: 100,197,481 (GRCm39)	E968G	possibly damaging	Het
Ccdc68	T	C	18: 70,076,935 (GRCm39)		probably null	Het
Ccdc87	T	A	19: 4,889,889 (GRCm39)	L127H	probably damaging	Het
Cdk5r1	G	T	11: 80,368,569 (GRCm39)	A79S	probably benign	Het
Cfdp1	A	G	8: 112,580,766 (GRCm39)		probably benign	Het
Chi3l1	A	T	1: 134,111,339 (GRCm39)	I62F	probably damaging	Het
Cnot1	A	T	8: 96,481,706 (GRCm39)	I789K	probably benign	Het
Cobl	T	C	11: 12,204,371 (GRCm39)	K695R	probably damaging	Het
Cobl	C	A	11: 12,204,370 (GRCm39)	K752N	probably damaging	Het
Cstdc5	G	A	16: 36,179,899 (GRCm39)	P73S	probably benign	Het
Dcaf6	T	C	1: 165,165,915 (GRCm39)		probably null	Het
Ece2	A	T	16: 20,451,398 (GRCm39)	I197F	probably damaging	Het
Eif2b5	T	G	16: 20,321,536 (GRCm39)	V363G	possibly damaging	Het
Gca	T	C	2: 62,502,702 (GRCm39)	S37P	probably benign	Het
Ghsr	A	C	3: 27,426,645 (GRCm39)	I234L	probably damaging	Het
Grin3b	A	T	10: 79,808,723 (GRCm39)	I158F	possibly damaging	Het
Gtf2h2	A	T	13: 100,617,747 (GRCm39)	D178E	probably damaging	Het
Herc2	A	G	7: 55,747,246 (GRCm39)	E461G	probably damaging	Het
Hsph1	T	A	5: 149,547,057 (GRCm39)	N531I	possibly damaging	Het
Insl6	G	T	19: 29,302,529 (GRCm39)	Q63K	probably benign	Het
Lrp1b	T	C	2: 40,592,806 (GRCm39)	N3771S	probably benign	Het
Lrp8	T	C	4: 107,691,952 (GRCm39)		probably null	Het
Lvrn	C	T	18: 47,023,971 (GRCm39)	Q773*	probably null	Het
Mterf1b	T	C	5: 4,246,478 (GRCm39)	F40L	possibly damaging	Het
Nrg1	G	A	8: 32,316,391 (GRCm39)		probably benign	Het
Or10ak13	T	A	4: 118,639,117 (GRCm39)	I222F	possibly damaging	Het
Or1n1	T	A	2: 36,750,232 (GRCm39)	I43F	probably damaging	Het
Or5p79	T	C	7: 108,221,880 (GRCm39)	I287T	possibly damaging	Het
Pax5	C	T	4: 44,570,059 (GRCm39)	V319I	probably damaging	Het
Plcz1	T	A	6: 139,956,307 (GRCm39)	T321S	probably benign	Het
Plekha6	A	G	1: 133,212,676 (GRCm39)	E660G	probably damaging	Het
Prep	T	C	10: 44,943,428 (GRCm39)	M1T	probably null	Het
Prickle1	C	T	15: 93,399,034 (GRCm39)	S598N	possibly damaging	Het
Prtn3	A	G	10: 79,716,932 (GRCm39)	Q99R	probably benign	Het
Rad50	A	G	11: 53,592,883 (GRCm39)	V89A	probably damaging	Het
Ret	T	C	6: 118,153,213 (GRCm39)	Y485C	probably benign	Het
Setd2	T	A	9: 110,379,124 (GRCm39)	F980I	possibly damaging	Het
Slc44a4	A	G	17: 35,140,279 (GRCm39)	Y228C	probably damaging	Het
Tex10	C	T	4: 48,435,028 (GRCm39)	C779Y	possibly damaging	Het
Tfdp2	T	G	9: 96,199,592 (GRCm39)	S285A	probably benign	Het
Thsd4	T	A	9: 59,896,380 (GRCm39)		probably benign	Het
Tmem106a	A	C	11: 101,481,219 (GRCm39)	E242D	probably benign	Het
Ttc22	T	C	4: 106,495,669 (GRCm39)	V341A	probably benign	Het
Ubr4	T	A	4: 139,138,095 (GRCm39)	S1151T	probably damaging	Het
Ubr4	G	A	4: 139,120,470 (GRCm39)		probably null	Het
Vmn1r206	A	T	13: 22,805,060 (GRCm39)	L49*	probably null	Het
Vmn1r233	A	T	17: 21,214,887 (GRCm39)	F21Y	probably benign	Het
Vmn1r233	A	T	17: 21,214,886 (GRCm39)	F21L	probably benign	Het
Vmn2r15	A	T	5: 109,441,134 (GRCm39)	C241*	probably null	Het
Zmym6	T	A	4: 127,003,764 (GRCm39)		probably benign	Het

Other mutations in Cdyl

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00981:Cdyl	APN	13	36,000,096 (GRCm39)	missense	probably damaging	0.98
IGL01547:Cdyl	APN	13	35,974,145 (GRCm39)	missense	possibly damaging	0.90
IGL01911:Cdyl	APN	13	36,047,226 (GRCm39)	missense	probably damaging	0.97
IGL02584:Cdyl	APN	13	35,867,769 (GRCm39)	missense	probably benign
R1630:Cdyl	UTSW	13	35,867,786 (GRCm39)	missense	possibly damaging	0.66
R1678:Cdyl	UTSW	13	36,040,872 (GRCm39)	missense	probably damaging	0.99
R1802:Cdyl	UTSW	13	36,056,619 (GRCm39)	nonsense	probably null
R4435:Cdyl	UTSW	13	36,042,233 (GRCm39)	critical splice donor site	probably null
R5841:Cdyl	UTSW	13	36,056,544 (GRCm39)	missense	probably damaging	1.00
R5860:Cdyl	UTSW	13	36,042,066 (GRCm39)	missense	possibly damaging	0.73
R6430:Cdyl	UTSW	13	36,055,589 (GRCm39)	missense	possibly damaging	0.74
R7127:Cdyl	UTSW	13	36,040,651 (GRCm39)	missense	probably benign	0.01
R7296:Cdyl	UTSW	13	36,047,378 (GRCm39)	missense	probably damaging	1.00
R7369:Cdyl	UTSW	13	35,999,992 (GRCm39)	missense	probably damaging	1.00
R7422:Cdyl	UTSW	13	36,042,177 (GRCm39)	missense	possibly damaging	0.90
R7635:Cdyl	UTSW	13	36,055,634 (GRCm39)	missense	probably damaging	1.00
R7756:Cdyl	UTSW	13	36,056,624 (GRCm39)	missense	probably damaging	1.00
R7758:Cdyl	UTSW	13	36,056,624 (GRCm39)	missense	probably damaging	1.00
R7764:Cdyl	UTSW	13	36,000,126 (GRCm39)	missense	possibly damaging	0.92
R8221:Cdyl	UTSW	13	36,000,147 (GRCm39)	missense	probably benign	0.00
R8820:Cdyl	UTSW	13	36,042,174 (GRCm39)	missense	probably damaging	1.00
R9277:Cdyl	UTSW	13	36,042,222 (GRCm39)	missense	probably benign
R9550:Cdyl	UTSW	13	36,000,147 (GRCm39)	missense	probably benign	0.00
Z1176:Cdyl	UTSW	13	35,999,949 (GRCm39)	missense	probably damaging	1.00
Z1177:Cdyl	UTSW	13	36,000,053 (GRCm39)	missense	probably benign	0.21

Posted On

2015-04-16