Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02755:Ift22'

306390

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Ift22

Ensembl Gene

ENSMUSG00000007987

Gene Name

intraflagellar transport 22

Synonyms

Rabl5, 3110017O03Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL02755

Quality Score

Status

Chromosome

Chromosomal Location

136937004-136943363 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 136940640 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 102 (W102R)

Ref Sequence

ENSEMBL: ENSMUSP00000143488 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000199101] [ENSMUST00000200153] [ENSMUST00000200157]

AlphaFold

Q9DAI2

Predicted Effect

probably benign
Transcript: ENSMUST00000008131

SMART Domains

Protein: ENSMUSP00000008131
Gene: ENSMUSG00000007987

Domain	Start	End	E-Value	Type
Pfam:Arf	2	129	6.2e-10	PFAM
Pfam:SRPRB	2	182	9.9e-8	PFAM
Pfam:Ras	5	125	2.1e-13	PFAM
Pfam:Roc	5	125	3.2e-16	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000199101
AA Change: W72R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000143017
Gene: ENSMUSG00000007987
AA Change: W72R

Domain	Start	End	E-Value	Type
SCOP:d1f6ba_	5	91	2e-10	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000200054

Predicted Effect

probably damaging
Transcript: ENSMUST00000200153
AA Change: W102R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000142389
Gene: ENSMUSG00000007987
AA Change: W102R

Domain	Start	End	E-Value	Type
Pfam:Arf	2	133	1.1e-8	PFAM
Pfam:SRPRB	2	133	1.5e-5	PFAM
Pfam:Miro	5	122	7.9e-7	PFAM
Pfam:Ras	5	125	3.1e-12	PFAM
low complexity region	148	163	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000200157
AA Change: W102R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000143488
Gene: ENSMUSG00000007987
AA Change: W102R

Domain	Start	End	E-Value	Type
Pfam:Arf	2	129	6.4e-10	PFAM
Pfam:SRPRB	2	181	1e-7	PFAM
Pfam:Miro	5	122	5.1e-8	PFAM
Pfam:Ras	5	125	1.9e-13	PFAM

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 45 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930512M02Rik	T	A	11: 11,539,358 (GRCm39)	N189I	unknown	Het
Adamts19	T	A	18: 59,103,005 (GRCm39)	I682K	probably benign	Het
Adra1a	G	A	14: 66,965,110 (GRCm39)	V367I	probably benign	Het
Alpk3	A	G	7: 80,743,507 (GRCm39)	E1108G	possibly damaging	Het
Ccdc186	A	T	19: 56,801,828 (GRCm39)	N96K	probably benign	Het
Ccnb1	A	G	13: 100,918,168 (GRCm39)	Y160H	possibly damaging	Het
Cebpz	A	T	17: 79,238,759 (GRCm39)	V683E	probably damaging	Het
Cep104	A	G	4: 154,081,416 (GRCm39)	H786R	possibly damaging	Het
Chd9	T	C	8: 91,760,210 (GRCm39)	I1985T	probably benign	Het
Cntn2	T	A	1: 132,457,040 (GRCm39)	T36S	probably benign	Het
Cntnap5c	T	C	17: 58,671,189 (GRCm39)	S1126P	probably benign	Het
Cpt2	A	T	4: 107,764,972 (GRCm39)	V264E	probably damaging	Het
Degs2	T	C	12: 108,658,842 (GRCm39)	T46A	probably benign	Het
Dip2c	T	C	13: 9,600,356 (GRCm39)		probably null	Het
Dnaaf1	A	G	8: 120,317,410 (GRCm39)	D313G	probably damaging	Het
Ephb3	T	G	16: 21,040,448 (GRCm39)	D561E	probably damaging	Het
Eps15	A	G	4: 109,186,895 (GRCm39)	T321A	probably benign	Het
Ercc6	A	G	14: 32,297,705 (GRCm39)		probably benign	Het
Gcn1	T	A	5: 115,742,065 (GRCm39)		probably null	Het
Gm28177	G	A	1: 52,136,031 (GRCm39)		probably benign	Het
Gucy2g	C	A	19: 55,198,786 (GRCm39)	V786F	probably benign	Het
H2-M3	T	C	17: 37,581,913 (GRCm39)	V123A	possibly damaging	Het
Hmgxb3	T	C	18: 61,305,260 (GRCm39)	K33E	probably damaging	Het
Lgi4	T	C	7: 30,762,530 (GRCm39)	F44L	probably damaging	Het
Lingo3	T	C	10: 80,671,843 (GRCm39)	E29G	possibly damaging	Het
Nf2	A	G	11: 4,768,542 (GRCm39)	L109P	probably damaging	Het
Ntrk3	T	C	7: 78,110,187 (GRCm39)	H349R	probably benign	Het
Or6c8	T	A	10: 128,915,065 (GRCm39)	M256L	probably benign	Het
Otub1	T	A	19: 7,183,624 (GRCm39)	M1L	probably benign	Het
Pkp3	A	G	7: 140,668,318 (GRCm39)		probably null	Het
Popdc3	C	A	10: 45,191,314 (GRCm39)	H142N	probably damaging	Het
Pot1a	A	G	6: 25,771,612 (GRCm39)	F203S	possibly damaging	Het
Prdx5	A	G	19: 6,886,963 (GRCm39)	V8A	probably benign	Het
Rabgap1	T	C	2: 37,427,326 (GRCm39)	Y636H	probably damaging	Het
Rad51d	A	T	11: 82,772,458 (GRCm39)	I236N	probably benign	Het
Reep3	G	T	10: 66,857,656 (GRCm39)	T145K	possibly damaging	Het
Samd3	G	T	10: 26,120,475 (GRCm39)	L156F	probably damaging	Het
Sh3bp5l	A	G	11: 58,228,829 (GRCm39)	T101A	probably benign	Het
Slc3a1	T	C	17: 85,344,605 (GRCm39)	V257A	probably damaging	Het
Sptbn1	A	G	11: 30,092,247 (GRCm39)	V506A	probably damaging	Het
Stab1	A	T	14: 30,861,595 (GRCm39)	S2471T	probably benign	Het
Vmn2r85	T	C	10: 130,261,381 (GRCm39)	T319A	probably damaging	Het
Vmn2r94	C	T	17: 18,464,761 (GRCm39)	V510I	probably benign	Het
Wscd2	T	A	5: 113,712,092 (GRCm39)	M337K	possibly damaging	Het
Zfp866	A	G	8: 70,219,290 (GRCm39)		probably null	Het

Other mutations in Ift22

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02153:Ift22	APN	5	136,940,550 (GRCm39)	missense	probably benign	0.44
R0167:Ift22	UTSW	5	136,940,745 (GRCm39)	missense	probably benign	0.05
R0556:Ift22	UTSW	5	136,940,145 (GRCm39)	splice site	probably null
R1378:Ift22	UTSW	5	136,941,757 (GRCm39)	missense	probably benign	0.09
R2927:Ift22	UTSW	5	136,941,799 (GRCm39)	missense	probably damaging	1.00
R4058:Ift22	UTSW	5	136,940,717 (GRCm39)	missense	unknown
R4562:Ift22	UTSW	5	136,941,724 (GRCm39)	missense	probably benign	0.32
R4650:Ift22	UTSW	5	136,940,655 (GRCm39)	missense	probably benign	0.40
R4957:Ift22	UTSW	5	136,937,070 (GRCm39)	start gained	probably benign
R6057:Ift22	UTSW	5	136,939,987 (GRCm39)	missense	possibly damaging	0.95
R7910:Ift22	UTSW	5	136,940,638 (GRCm39)	missense	probably benign	0.00
R8905:Ift22	UTSW	5	136,941,745 (GRCm39)	missense	probably benign

Posted On

2015-04-16