Mutagenetix > Incidental Mutation

Incidental Mutation 'R3898:Lmntd1'

309050

Institutional Source

Beutler Lab

Gene Symbol

Lmntd1

Ensembl Gene

ENSMUSG00000054966

Gene Name

lamin tail domain containing 1

Synonyms

4933403M22Rik, Ifltd1, Lmna-rs1

MMRRC Submission

040906-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.053) question?

Stock #

R3898 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

145311619-145560045 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 145359152 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Proline to Serine at position 333 (P333S)

Ref Sequence

ENSEMBL: ENSMUSP00000107337 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000111706] [ENSMUST00000111708] [ENSMUST00000148739]

AlphaFold

Q9D4C1

Predicted Effect

probably benign
Transcript: ENSMUST00000111706
AA Change: P283S

PolyPhen 2 Score 0.160 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000107335
Gene: ENSMUSG00000054966
AA Change: P283S

Domain	Start	End	E-Value	Type
Pfam:LTD	121	240	1.1e-18	PFAM
low complexity region	324	340	N/A	INTRINSIC
low complexity region	344	362	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111708
AA Change: P333S

PolyPhen 2 Score 0.160 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000107337
Gene: ENSMUSG00000054966
AA Change: P333S

Domain	Start	End	E-Value	Type
Pfam:LTD	174	287	1.6e-12	PFAM
low complexity region	374	390	N/A	INTRINSIC
low complexity region	394	412	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000148739
AA Change: P187S

PolyPhen 2 Score 0.140 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000120740
Gene: ENSMUSG00000054966
AA Change: P187S

Domain	Start	End	E-Value	Type
Pfam:LTD	24	144	1.2e-18	PFAM
low complexity region	228	244	N/A	INTRINSIC
low complexity region	248	266	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 44 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alg1	A	C	16: 5,054,253 (GRCm39)	I154L	possibly damaging	Het
Ankra2	C	T	13: 98,410,317 (GRCm39)	L136F	probably benign	Het
Anpep	A	G	7: 79,488,973 (GRCm39)	S372P	probably benign	Het
Cabyr	T	C	18: 12,884,580 (GRCm39)	S356P	probably benign	Het
Cad	G	T	5: 31,231,366 (GRCm39)	C1633F	probably benign	Het
Cadps2	G	A	6: 23,528,125 (GRCm39)	R425W	probably damaging	Het
Ccdc180	A	G	4: 45,912,799 (GRCm39)	K593E	possibly damaging	Het
Cdh8	T	A	8: 99,898,005 (GRCm39)	E436V	probably damaging	Het
Cfap95	A	G	19: 23,570,466 (GRCm39)	V101A	probably benign	Het
Cln6	T	G	9: 62,757,934 (GRCm39)	F231C	probably damaging	Het
Cul2	A	G	18: 3,434,033 (GRCm39)	K677E	probably benign	Het
Cyp2c69	T	C	19: 39,864,834 (GRCm39)	I215V	probably benign	Het
Dhx36	T	C	3: 62,399,790 (GRCm39)	D393G	probably damaging	Het
Dnah7b	T	C	1: 46,282,417 (GRCm39)	V2850A	probably damaging	Het
Dnah8	G	A	17: 31,073,872 (GRCm39)	R4514H	probably damaging	Het
Drg2	T	A	11: 60,347,460 (GRCm39)	S50T	probably benign	Het
Ecscr	A	G	18: 35,846,705 (GRCm39)	S230P	possibly damaging	Het
Eif2ak4	T	C	2: 118,261,404 (GRCm39)	V527A	probably damaging	Het
Elfn1	G	A	5: 139,957,719 (GRCm39)	R241H	probably damaging	Het
Fchsd2	A	G	7: 100,841,006 (GRCm39)	K172E	possibly damaging	Het
Fli1	C	T	9: 32,388,018 (GRCm39)	G24R	possibly damaging	Het
Frmd3	A	G	4: 73,992,346 (GRCm39)	D71G	probably damaging	Het
Ggnbp1	A	G	17: 27,244,312 (GRCm39)		probably benign	Het
Gpat2	T	C	2: 127,277,018 (GRCm39)	F713S	probably damaging	Het
H2-Q2	C	T	17: 35,561,743 (GRCm39)	P78S	probably damaging	Het
Kcnq2	C	T	2: 180,751,479 (GRCm39)	A306T	probably damaging	Het
Lrp1	G	A	10: 127,427,969 (GRCm39)	R535*	probably null	Het
Mmrn2	G	T	14: 34,121,517 (GRCm39)		probably null	Het
Nlrp1a	G	A	11: 71,013,700 (GRCm39)	P517S	probably benign	Het
Or2y13	A	T	11: 49,415,386 (GRCm39)	I279F	probably damaging	Het
Pou4f1	T	C	14: 104,703,165 (GRCm39)	*422W	probably null	Het
Ptpn14	C	T	1: 189,582,728 (GRCm39)	P525L	probably benign	Het
Pyroxd2	C	A	19: 42,728,831 (GRCm39)	G190C	probably damaging	Het
Rd3	T	C	1: 191,717,217 (GRCm39)	V114A	probably damaging	Het
Sptbn5	T	C	2: 119,887,691 (GRCm39)		noncoding transcript	Het
Tbc1d5	A	T	17: 51,270,772 (GRCm39)	F153Y	probably damaging	Het
Thop1	G	A	10: 80,916,278 (GRCm39)	G429S	probably damaging	Het
Trim30d	T	A	7: 104,132,736 (GRCm39)	I184L	probably benign	Het
Ubr5	T	C	15: 37,997,983 (GRCm39)	S1727G	probably benign	Het
Vezf1	T	C	11: 87,966,999 (GRCm39)	F77L	probably benign	Het
Vmn2r12	C	T	5: 109,238,370 (GRCm39)	A457T	probably benign	Het
Xirp1	A	T	9: 119,848,406 (GRCm39)	M159K	probably benign	Het
Zkscan17	C	T	11: 59,394,263 (GRCm39)	A113T	probably damaging	Het
Zyg11a	T	A	4: 108,067,391 (GRCm39)	N40Y	probably damaging	Het

Other mutations in Lmntd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01761:Lmntd1	APN	6	145,379,448 (GRCm39)	missense	possibly damaging	0.92
IGL01986:Lmntd1	APN	6	145,365,533 (GRCm39)	missense	probably damaging	1.00
IGL02064:Lmntd1	APN	6	145,373,002 (GRCm39)	splice site	probably null
IGL02430:Lmntd1	APN	6	145,359,140 (GRCm39)	missense	probably benign	0.34
IGL03296:Lmntd1	APN	6	145,359,203 (GRCm39)	missense	probably benign	0.23
PIT4514001:Lmntd1	UTSW	6	145,372,979 (GRCm39)	frame shift	probably null
R0022:Lmntd1	UTSW	6	145,375,716 (GRCm39)	missense	probably benign	0.06
R0050:Lmntd1	UTSW	6	145,363,202 (GRCm39)	missense	probably damaging	1.00
R0084:Lmntd1	UTSW	6	145,350,254 (GRCm39)	missense	unknown
R0631:Lmntd1	UTSW	6	145,375,726 (GRCm39)	missense	probably benign	0.00
R1716:Lmntd1	UTSW	6	145,365,600 (GRCm39)	missense	probably damaging	1.00
R1850:Lmntd1	UTSW	6	145,359,206 (GRCm39)	missense	probably benign	0.06
R4411:Lmntd1	UTSW	6	145,373,003 (GRCm39)	critical splice donor site	probably null
R5596:Lmntd1	UTSW	6	145,359,140 (GRCm39)	missense	probably benign	0.34
R5944:Lmntd1	UTSW	6	145,373,042 (GRCm39)	missense	probably damaging	0.99
R6711:Lmntd1	UTSW	6	145,489,228 (GRCm39)	missense	probably benign	0.04
R7369:Lmntd1	UTSW	6	145,359,301 (GRCm39)	missense	probably damaging	1.00
R7445:Lmntd1	UTSW	6	145,375,693 (GRCm39)	missense	probably damaging	0.96
R7725:Lmntd1	UTSW	6	145,489,196 (GRCm39)	missense	probably benign	0.10
R8237:Lmntd1	UTSW	6	145,373,146 (GRCm39)	missense	probably damaging	0.99
R8886:Lmntd1	UTSW	6	145,363,152 (GRCm39)	missense	probably damaging	1.00
R8935:Lmntd1	UTSW	6	145,489,229 (GRCm39)	missense	probably benign	0.10
R9046:Lmntd1	UTSW	6	145,365,565 (GRCm39)	missense	probably damaging	0.98
R9258:Lmntd1	UTSW	6	145,359,256 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCATTCATTGCGTCCCAAGC -3'
(R):5'- TGAAATTGAGAACTCTCTCCATTCC -3'

Sequencing Primer
(F):5'- GCGTCCCAAGCATTTACTTAAAGAG -3'
(R):5'- GAGAACTCTCTCCATTCCTATTAGG -3'

Posted On

2015-04-17