Mutagenetix > Incidental Mutation

Incidental Mutation 'R3977:Ccdc96'

311066

Institutional Source

Beutler Lab

Gene Symbol

Ccdc96

Ensembl Gene

ENSMUSG00000050677

Gene Name

coiled-coil domain containing 96

Synonyms

4921513E08Rik

MMRRC Submission

040940-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.060) question?

Stock #

R3977 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

36641932-36645515 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 36642510 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 172 (L172P)

Ref Sequence

ENSEMBL: ENSMUSP00000059636 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031097] [ENSMUST00000060100] [ENSMUST00000119916]

AlphaFold

Q9CR92

Predicted Effect

probably benign
Transcript: ENSMUST00000031097

SMART Domains

Protein: ENSMUSP00000031097
Gene: ENSMUSG00000029196

Domain	Start	End	E-Value	Type
ZnF_ZZ	3	46	2.64e-5	SMART
SANT	66	116	1.75e-9	SMART
low complexity region	138	154	N/A	INTRINSIC
low complexity region	233	260	N/A	INTRINSIC
low complexity region	306	325	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000060100
AA Change: L172P

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000059636
Gene: ENSMUSG00000050677
AA Change: L172P

Domain	Start	End	E-Value	Type
low complexity region	37	50	N/A	INTRINSIC
SCOP:d1qbkb_	99	144	6e-3	SMART
low complexity region	223	234	N/A	INTRINSIC
coiled coil region	315	355	N/A	INTRINSIC
Pfam:DUF4201	394	570	9.5e-53	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000119916

SMART Domains

Protein: ENSMUSP00000114124
Gene: ENSMUSG00000029196

Domain	Start	End	E-Value	Type
Blast:SANT	16	41	2e-10	BLAST
low complexity region	63	79	N/A	INTRINSIC
low complexity region	158	185	N/A	INTRINSIC
low complexity region	231	250	N/A	INTRINSIC

Meta Mutation Damage Score

0.1039

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.9%
20x: 93.7%

Validation Efficiency

96% (50/52)

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ace	C	T	11: 105,872,664 (GRCm39)	P942L	possibly damaging	Het
Adam28	A	G	14: 68,848,443 (GRCm39)	V671A	probably benign	Het
Arfgef1	A	G	1: 10,279,859 (GRCm39)	V236A	probably benign	Het
B020004C17Rik	G	T	14: 57,254,645 (GRCm39)	M156I	possibly damaging	Het
Bicral	T	A	17: 47,141,917 (GRCm39)	M1L	unknown	Het
Brpf3	A	G	17: 29,026,016 (GRCm39)	E363G	possibly damaging	Het
Cln3	G	A	7: 126,179,308 (GRCm39)		probably benign	Het
Dnah7c	T	C	1: 46,668,071 (GRCm39)	I1526T	possibly damaging	Het
Entr1	T	A	2: 26,274,805 (GRCm39)	N364I	probably damaging	Het
Fmo3	T	G	1: 162,786,147 (GRCm39)	E281A	probably damaging	Het
Frem2	A	G	3: 53,559,491 (GRCm39)	I1672T	probably benign	Het
Gbp2b	A	G	3: 142,309,470 (GRCm39)	I194V	probably benign	Het
Gprc6a	C	A	10: 51,497,197 (GRCm39)	V449L	probably benign	Het
Hk1	A	G	10: 62,126,098 (GRCm39)	V396A	probably benign	Het
Hoxc13	T	C	15: 102,829,675 (GRCm39)	V18A	possibly damaging	Het
Hr	A	G	14: 70,801,024 (GRCm39)	T699A	probably benign	Het
Il19	A	T	1: 130,863,770 (GRCm39)	C74S	probably damaging	Het
Krt1c	T	C	15: 101,719,562 (GRCm39)	T703A	unknown	Het
Lrig2	A	T	3: 104,365,160 (GRCm39)	V664E	probably damaging	Het
Lrrc37a	T	C	11: 103,348,430 (GRCm39)	K2755R	unknown	Het
Man1c1	G	C	4: 134,430,749 (GRCm39)	P11R	probably damaging	Het
Mbtd1	A	G	11: 93,796,001 (GRCm39)	N13D	probably benign	Het
Mfsd4b5	T	C	10: 39,850,704 (GRCm39)		probably benign	Het
Nras	A	G	3: 102,967,541 (GRCm39)	I46V	probably benign	Het
Oasl1	C	T	5: 115,070,957 (GRCm39)	T274I	probably damaging	Het
Ogfod2	C	A	5: 124,251,272 (GRCm39)		probably null	Het
Or10q3	C	A	19: 11,847,869 (GRCm39)	R237L	possibly damaging	Het
Or10v1	T	A	19: 11,873,880 (GRCm39)	F165Y	probably damaging	Het
Or11a4	T	C	17: 37,536,049 (GRCm39)	V11A	probably benign	Het
Or2w1b	T	A	13: 21,300,031 (GRCm39)	H56Q	probably benign	Het
Or4c3	C	A	2: 89,852,089 (GRCm39)	G107V	probably damaging	Het
Or6c5	C	T	10: 129,074,377 (GRCm39)	R120C	probably damaging	Het
Pkmyt1	A	G	17: 23,954,305 (GRCm39)	M362V	probably benign	Het
Ppfia2	A	G	10: 106,666,490 (GRCm39)	T399A	possibly damaging	Het
Ppp1r12b	A	G	1: 134,693,713 (GRCm39)	S983P	probably benign	Het
Ptpn22	A	G	3: 103,780,957 (GRCm39)		probably benign	Het
Raph1	A	T	1: 60,537,682 (GRCm39)	D491E	probably benign	Het
Rc3h1	A	G	1: 160,786,969 (GRCm39)		probably null	Het
Rtn4	T	C	11: 29,643,819 (GRCm39)	L5P	probably benign	Het
Slc23a4	C	T	6: 34,930,723 (GRCm39)	V400I	probably benign	Het
Slco1a5	A	G	6: 142,204,698 (GRCm39)		probably benign	Het
Smpd1	T	C	7: 105,205,108 (GRCm39)	F329S	probably benign	Het
Sycp2l	A	G	13: 41,295,440 (GRCm39)	I334M	probably damaging	Het
Tas2r103	A	G	6: 133,013,280 (GRCm39)	L262P	probably benign	Het
Ten1	G	A	11: 116,107,771 (GRCm39)		probably null	Het
Tfap2d	C	G	1: 19,174,718 (GRCm39)	S57C	possibly damaging	Het
Tnr	A	G	1: 159,719,593 (GRCm39)	M957V	probably benign	Het
Trbv13-3	A	G	6: 41,107,079 (GRCm39)		probably benign	Het
Trp53rkb	C	T	2: 166,637,446 (GRCm39)	A134V	possibly damaging	Het
Trp63	A	G	16: 25,639,490 (GRCm39)		probably benign	Het
Vmn2r112	T	A	17: 22,822,096 (GRCm39)	V258E	probably damaging	Het
Vmn2r74	T	C	7: 85,607,345 (GRCm39)	Y126C	probably benign	Het
Vmn2r96	T	A	17: 18,817,941 (GRCm39)	I698N	probably damaging	Het

Other mutations in Ccdc96

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00952:Ccdc96	APN	5	36,642,424 (GRCm39)	unclassified	probably benign
R0167:Ccdc96	UTSW	5	36,642,497 (GRCm39)	missense	probably benign	0.18
R0302:Ccdc96	UTSW	5	36,643,445 (GRCm39)	missense	possibly damaging	0.51
R0423:Ccdc96	UTSW	5	36,642,591 (GRCm39)	missense	probably benign	0.41
R0532:Ccdc96	UTSW	5	36,643,710 (GRCm39)	missense	probably benign	0.18
R3800:Ccdc96	UTSW	5	36,643,611 (GRCm39)	missense	probably damaging	1.00
R4575:Ccdc96	UTSW	5	36,643,419 (GRCm39)	missense	possibly damaging	0.88
R4720:Ccdc96	UTSW	5	36,642,219 (GRCm39)	unclassified	probably benign
R5476:Ccdc96	UTSW	5	36,642,981 (GRCm39)	missense	possibly damaging	0.83
R5945:Ccdc96	UTSW	5	36,643,194 (GRCm39)	missense	probably damaging	1.00
R5995:Ccdc96	UTSW	5	36,643,718 (GRCm39)	missense	probably damaging	0.99
R6434:Ccdc96	UTSW	5	36,643,707 (GRCm39)	missense	probably damaging	1.00
R6493:Ccdc96	UTSW	5	36,643,596 (GRCm39)	missense	probably damaging	0.99
R6632:Ccdc96	UTSW	5	36,642,533 (GRCm39)	missense	probably benign	0.07
R6633:Ccdc96	UTSW	5	36,642,533 (GRCm39)	missense	probably benign	0.07
R7395:Ccdc96	UTSW	5	36,642,609 (GRCm39)	missense	probably benign	0.29
R7819:Ccdc96	UTSW	5	36,643,329 (GRCm39)	missense	probably damaging	0.98
R8466:Ccdc96	UTSW	5	36,642,252 (GRCm39)	unclassified	probably benign
R9351:Ccdc96	UTSW	5	36,642,069 (GRCm39)	missense	unknown
X0022:Ccdc96	UTSW	5	36,643,718 (GRCm39)	missense	probably damaging	1.00
Z1176:Ccdc96	UTSW	5	36,642,938 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- TGTTGAGGTCCCGGAAAGTC -3'
(R):5'- AAACTCTTCAGTGGACGCCC -3'

Sequencing Primer
(F):5'- AGAGCCAGAGAGTCTGCCAC -3'
(R):5'- AGTGGACGCCCCTTTTTG -3'

Posted On

2015-04-29