Incidental Mutation 'R4004:Rpn2'
| ID |
311379 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Rpn2
|
| Ensembl Gene |
ENSMUSG00000027642 |
| Gene Name |
ribophorin II |
| Synonyms |
1300012C06Rik, Rpn-2 |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R4004 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
157121018-157168238 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 157159928 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Leucine to Proline
at position 548
(L548P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000112081
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029171]
[ENSMUST00000116380]
|
| AlphaFold |
Q9DBG6 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000029171
AA Change: L516P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000029171
Gene: ENSMUSG00000027642
AA Change: L516P
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribophorin_II
|
2 |
71 |
1.5e-15 |
PFAM |
|
Pfam:Ribophorin_II
|
68 |
596 |
3.5e-247 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000116380
AA Change: L548P
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000112081
Gene: ENSMUSG00000027642
AA Change: L548P
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribophorin_II
|
9 |
627 |
1.8e-223 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123639
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000126248
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127252
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000141934
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149924
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 94.5%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a type I integral membrane protein found only in the rough endoplasmic reticulum. The encoded protein is part of an N-oligosaccharyl transferase complex that links high mannose oligosaccharides to asparagine residues found in the Asn-X-Ser/Thr consensus motif of nascent polypeptide chains. This protein is similar in sequence to the yeast oligosaccharyl transferase subunit SWP1. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 34 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acan |
A |
C |
7: 78,750,435 (GRCm39) |
E1735D |
probably damaging |
Het |
| Ano2 |
A |
G |
6: 125,990,242 (GRCm39) |
R788G |
probably damaging |
Het |
| Atg9a |
T |
C |
1: 75,163,095 (GRCm39) |
Y335C |
probably damaging |
Het |
| Capn10 |
T |
A |
1: 92,868,313 (GRCm39) |
L260Q |
probably damaging |
Het |
| Cblif |
T |
G |
19: 11,736,371 (GRCm39) |
V314G |
probably damaging |
Het |
| Ces1d |
A |
T |
8: 93,904,720 (GRCm39) |
F340Y |
probably benign |
Het |
| Cspg4b |
A |
G |
13: 113,454,914 (GRCm39) |
Q320R |
probably benign |
Het |
| Ctbp2 |
C |
A |
7: 132,593,502 (GRCm39) |
R733L |
probably benign |
Het |
| Dgkd |
T |
C |
1: 87,863,145 (GRCm39) |
I64T |
possibly damaging |
Het |
| Dmxl2 |
T |
C |
9: 54,353,674 (GRCm39) |
I765V |
probably benign |
Het |
| Dync2h1 |
C |
A |
9: 7,117,404 (GRCm39) |
C62F |
probably damaging |
Het |
| F2 |
T |
C |
2: 91,458,741 (GRCm39) |
N523S |
possibly damaging |
Het |
| Fat3 |
G |
A |
9: 15,909,567 (GRCm39) |
S2145F |
probably damaging |
Het |
| Fcgr1 |
A |
G |
3: 96,191,668 (GRCm39) |
V380A |
probably benign |
Het |
| Herc2 |
C |
A |
7: 55,756,213 (GRCm39) |
P751Q |
possibly damaging |
Het |
| Ikzf3 |
C |
T |
11: 98,379,843 (GRCm39) |
E142K |
probably damaging |
Het |
| Kctd3 |
A |
G |
1: 188,724,940 (GRCm39) |
S214P |
probably benign |
Het |
| Lrpap1 |
T |
A |
5: 35,262,888 (GRCm39) |
K50* |
probably null |
Het |
| Naa11 |
A |
T |
5: 97,539,652 (GRCm39) |
Y169N |
probably benign |
Het |
| Nup42 |
T |
C |
5: 24,387,434 (GRCm39) |
I408T |
probably damaging |
Het |
| Or1af1 |
A |
T |
2: 37,109,960 (GRCm39) |
H153L |
probably benign |
Het |
| Or2t35 |
C |
T |
14: 14,408,152 (GRCm38) |
A308V |
probably benign |
Het |
| Plxnc1 |
G |
A |
10: 94,630,459 (GRCm39) |
Q1512* |
probably null |
Het |
| Ptpn14 |
A |
G |
1: 189,582,707 (GRCm39) |
N518S |
probably benign |
Het |
| Rapgef5 |
A |
G |
12: 117,712,132 (GRCm39) |
I740V |
probably damaging |
Het |
| Ric1 |
C |
T |
19: 29,557,201 (GRCm39) |
R429C |
probably benign |
Het |
| Ryr3 |
C |
G |
2: 112,506,218 (GRCm39) |
R3443P |
probably damaging |
Het |
| Slc28a1 |
T |
C |
7: 80,818,786 (GRCm39) |
S580P |
probably damaging |
Het |
| Slco6c1 |
A |
G |
1: 97,003,610 (GRCm39) |
Y496H |
probably damaging |
Het |
| Spag5 |
T |
C |
11: 78,212,355 (GRCm39) |
M1101T |
probably benign |
Het |
| Utp11 |
A |
T |
4: 124,576,230 (GRCm39) |
F138I |
probably damaging |
Het |
| Vcp |
G |
A |
4: 42,983,028 (GRCm39) |
T606I |
probably damaging |
Het |
| Zfhx4 |
C |
T |
3: 5,468,418 (GRCm39) |
P2859S |
probably benign |
Het |
| Zfp316 |
A |
G |
5: 143,240,874 (GRCm39) |
S382P |
possibly damaging |
Het |
|
| Other mutations in Rpn2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00547:Rpn2
|
APN |
2 |
157,156,833 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01894:Rpn2
|
APN |
2 |
157,136,093 (GRCm39) |
missense |
probably benign |
0.45 |
|
IGL02104:Rpn2
|
APN |
2 |
157,163,747 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02368:Rpn2
|
APN |
2 |
157,144,328 (GRCm39) |
missense |
probably benign |
|
|
IGL02819:Rpn2
|
APN |
2 |
157,158,130 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0932:Rpn2
|
UTSW |
2 |
157,125,691 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R1666:Rpn2
|
UTSW |
2 |
157,136,075 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1668:Rpn2
|
UTSW |
2 |
157,136,075 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1713:Rpn2
|
UTSW |
2 |
157,156,888 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2276:Rpn2
|
UTSW |
2 |
157,152,208 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R2279:Rpn2
|
UTSW |
2 |
157,152,208 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R3409:Rpn2
|
UTSW |
2 |
157,132,572 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R3411:Rpn2
|
UTSW |
2 |
157,132,572 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R3777:Rpn2
|
UTSW |
2 |
157,141,477 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4575:Rpn2
|
UTSW |
2 |
157,137,244 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4613:Rpn2
|
UTSW |
2 |
157,144,345 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R4856:Rpn2
|
UTSW |
2 |
157,159,964 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4886:Rpn2
|
UTSW |
2 |
157,159,964 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5491:Rpn2
|
UTSW |
2 |
157,139,303 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5526:Rpn2
|
UTSW |
2 |
157,165,187 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5633:Rpn2
|
UTSW |
2 |
157,125,516 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5718:Rpn2
|
UTSW |
2 |
157,163,747 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5772:Rpn2
|
UTSW |
2 |
157,137,265 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6101:Rpn2
|
UTSW |
2 |
157,152,108 (GRCm39) |
splice site |
probably null |
|
|
R6618:Rpn2
|
UTSW |
2 |
157,163,781 (GRCm39) |
missense |
probably benign |
|
|
R6698:Rpn2
|
UTSW |
2 |
157,139,330 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R8882:Rpn2
|
UTSW |
2 |
157,136,102 (GRCm39) |
missense |
probably benign |
|
|
R8953:Rpn2
|
UTSW |
2 |
157,163,746 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9085:Rpn2
|
UTSW |
2 |
157,125,567 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R9124:Rpn2
|
UTSW |
2 |
157,139,458 (GRCm39) |
missense |
probably benign |
|
|
R9368:Rpn2
|
UTSW |
2 |
157,141,500 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R9638:Rpn2
|
UTSW |
2 |
157,125,566 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
PCR Primer
(F):5'- GTCAAAGCCTTGGCCTCTAG -3'
(R):5'- CTGGCAGCAATTTTCTCATGTG -3'
Sequencing Primer
(F):5'- CTGAAACTTCGTGGTGTG -3'
(R):5'- AATGGATGCATTTATTTGGCTCTTCC -3'
|
| Posted On |
2015-04-29 |
Incidental Mutation