Incidental Mutation 'R4011:Trim65'
ID |
311703 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Trim65
|
Ensembl Gene |
ENSMUSG00000054517 |
Gene Name |
tripartite motif-containing 65 |
Synonyms |
4732463G12Rik |
MMRRC Submission |
040948-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R4011 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
11 |
Chromosomal Location |
116012672-116021954 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 116018529 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Phenylalanine to Leucine
at position 249
(F249L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000102048
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000067632]
[ENSMUST00000106439]
[ENSMUST00000106440]
|
AlphaFold |
Q8BFW4 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000067632
AA Change: F249L
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
SMART Domains |
Protein: ENSMUSP00000063410 Gene: ENSMUSG00000054517 AA Change: F249L
Domain | Start | End | E-Value | Type |
RING
|
13 |
51 |
2.47e-9 |
SMART |
low complexity region
|
69 |
85 |
N/A |
INTRINSIC |
Blast:BBOX
|
94 |
132 |
3e-10 |
BLAST |
coiled coil region
|
140 |
175 |
N/A |
INTRINSIC |
low complexity region
|
282 |
298 |
N/A |
INTRINSIC |
PRY
|
333 |
383 |
3.67e-3 |
SMART |
Pfam:SPRY
|
386 |
505 |
1.5e-10 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000106439
|
SMART Domains |
Protein: ENSMUSP00000102047 Gene: ENSMUSG00000020775
Domain | Start | End | E-Value | Type |
low complexity region
|
55 |
67 |
N/A |
INTRINSIC |
Pfam:PBP
|
183 |
313 |
3e-13 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000106440
AA Change: F249L
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
SMART Domains |
Protein: ENSMUSP00000102048 Gene: ENSMUSG00000054517 AA Change: F249L
Domain | Start | End | E-Value | Type |
RING
|
13 |
51 |
2.47e-9 |
SMART |
low complexity region
|
69 |
85 |
N/A |
INTRINSIC |
Blast:BBOX
|
94 |
132 |
2e-10 |
BLAST |
coiled coil region
|
140 |
175 |
N/A |
INTRINSIC |
low complexity region
|
282 |
298 |
N/A |
INTRINSIC |
PRY
|
333 |
383 |
3.67e-3 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133039
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000142550
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154061
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.9%
- 20x: 93.7%
|
Validation Efficiency |
100% (43/43) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 43 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abca13 |
G |
A |
11: 9,572,013 (GRCm39) |
|
probably benign |
Het |
Acss2 |
T |
A |
2: 155,399,548 (GRCm39) |
L529Q |
probably damaging |
Het |
Adsl |
T |
C |
15: 80,850,357 (GRCm39) |
S359P |
probably benign |
Het |
C1qtnf1 |
G |
A |
11: 118,337,365 (GRCm39) |
G65D |
probably benign |
Het |
Chd1l |
A |
T |
3: 97,477,718 (GRCm39) |
M679K |
probably benign |
Het |
Cspg4 |
A |
G |
9: 56,794,601 (GRCm39) |
T779A |
probably benign |
Het |
Ddx18 |
T |
C |
1: 121,489,810 (GRCm39) |
I200V |
probably benign |
Het |
Dnah9 |
T |
A |
11: 65,725,290 (GRCm39) |
M4288L |
probably damaging |
Het |
F830045P16Rik |
A |
T |
2: 129,305,467 (GRCm39) |
N302K |
probably damaging |
Het |
Gas1 |
T |
G |
13: 60,323,791 (GRCm39) |
D322A |
unknown |
Het |
Gfm2 |
T |
A |
13: 97,279,608 (GRCm39) |
|
probably benign |
Het |
Gm5592 |
G |
T |
7: 40,938,934 (GRCm39) |
V739L |
probably benign |
Het |
Hbb-bh2 |
T |
A |
7: 103,489,416 (GRCm39) |
H45L |
probably benign |
Het |
Ifit2 |
G |
T |
19: 34,551,445 (GRCm39) |
M328I |
probably benign |
Het |
Igdcc4 |
T |
C |
9: 65,042,761 (GRCm39) |
V1237A |
probably benign |
Het |
Kat2b |
G |
A |
17: 53,951,769 (GRCm39) |
|
probably null |
Het |
Lmtk2 |
A |
G |
5: 144,112,697 (GRCm39) |
N1139S |
probably benign |
Het |
Map1a |
G |
A |
2: 121,130,608 (GRCm39) |
A475T |
probably damaging |
Het |
Map3k20 |
G |
A |
2: 72,214,468 (GRCm39) |
|
probably benign |
Het |
Mga |
T |
C |
2: 119,762,261 (GRCm39) |
V1084A |
probably damaging |
Het |
Msantd5f6 |
T |
C |
4: 73,320,047 (GRCm39) |
Y244C |
probably damaging |
Het |
Myo3b |
A |
G |
2: 69,926,720 (GRCm39) |
I5V |
probably benign |
Het |
Or10a3m |
A |
T |
7: 108,313,366 (GRCm39) |
I269L |
probably benign |
Het |
Or10ag56 |
A |
G |
2: 87,139,555 (GRCm39) |
I141V |
probably benign |
Het |
Or10ag57 |
A |
T |
2: 87,218,924 (GRCm39) |
I292F |
possibly damaging |
Het |
Or56b1 |
A |
G |
7: 104,285,555 (GRCm39) |
T225A |
probably benign |
Het |
Or5h24 |
G |
A |
16: 58,919,124 (GRCm39) |
T77I |
unknown |
Het |
Or5v1 |
T |
C |
17: 37,810,382 (GRCm39) |
V280A |
possibly damaging |
Het |
Osmr |
G |
T |
15: 6,854,014 (GRCm39) |
R565S |
probably benign |
Het |
Pcolce |
G |
T |
5: 137,604,036 (GRCm39) |
Q344K |
probably benign |
Het |
Prdm11 |
A |
G |
2: 92,843,175 (GRCm39) |
F95L |
probably damaging |
Het |
Psd2 |
C |
T |
18: 36,120,300 (GRCm39) |
T383I |
probably benign |
Het |
Reg3a |
G |
A |
6: 78,360,553 (GRCm39) |
D164N |
probably damaging |
Het |
Serpina3a |
A |
T |
12: 104,084,902 (GRCm39) |
D99V |
probably benign |
Het |
Sgce |
G |
T |
6: 4,691,563 (GRCm39) |
Y301* |
probably null |
Het |
Slc28a3 |
T |
C |
13: 58,714,064 (GRCm39) |
K434E |
probably benign |
Het |
Slc30a3 |
A |
G |
5: 31,244,203 (GRCm39) |
F360L |
probably damaging |
Het |
Tdpoz3 |
A |
T |
3: 93,733,550 (GRCm39) |
Y75F |
possibly damaging |
Het |
Tubgcp3 |
A |
T |
8: 12,689,634 (GRCm39) |
L544* |
probably null |
Het |
Vit |
C |
T |
17: 78,842,121 (GRCm39) |
|
probably benign |
Het |
Wdfy4 |
C |
A |
14: 32,824,637 (GRCm39) |
|
probably benign |
Het |
Xpo6 |
T |
C |
7: 125,739,780 (GRCm39) |
K431E |
probably benign |
Het |
Xrn1 |
T |
A |
9: 95,867,278 (GRCm39) |
Y545* |
probably null |
Het |
|
Other mutations in Trim65 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01420:Trim65
|
APN |
11 |
116,017,335 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4531001:Trim65
|
UTSW |
11 |
116,018,535 (GRCm39) |
missense |
possibly damaging |
0.85 |
R0105:Trim65
|
UTSW |
11 |
116,016,892 (GRCm39) |
makesense |
probably null |
|
R0126:Trim65
|
UTSW |
11 |
116,015,430 (GRCm39) |
splice site |
probably benign |
|
R0268:Trim65
|
UTSW |
11 |
116,017,470 (GRCm39) |
splice site |
probably benign |
|
R0647:Trim65
|
UTSW |
11 |
116,019,036 (GRCm39) |
missense |
possibly damaging |
0.92 |
R2234:Trim65
|
UTSW |
11 |
116,021,503 (GRCm39) |
missense |
possibly damaging |
0.91 |
R2235:Trim65
|
UTSW |
11 |
116,021,503 (GRCm39) |
missense |
possibly damaging |
0.91 |
R4086:Trim65
|
UTSW |
11 |
116,017,305 (GRCm39) |
nonsense |
probably null |
|
R4088:Trim65
|
UTSW |
11 |
116,017,305 (GRCm39) |
nonsense |
probably null |
|
R4089:Trim65
|
UTSW |
11 |
116,017,305 (GRCm39) |
nonsense |
probably null |
|
R4434:Trim65
|
UTSW |
11 |
116,018,435 (GRCm39) |
nonsense |
probably null |
|
R5407:Trim65
|
UTSW |
11 |
116,016,906 (GRCm39) |
missense |
probably benign |
|
R5947:Trim65
|
UTSW |
11 |
116,019,108 (GRCm39) |
missense |
probably damaging |
0.99 |
R6299:Trim65
|
UTSW |
11 |
116,017,377 (GRCm39) |
missense |
probably benign |
0.00 |
R7248:Trim65
|
UTSW |
11 |
116,018,534 (GRCm39) |
missense |
probably benign |
0.01 |
R7336:Trim65
|
UTSW |
11 |
116,019,116 (GRCm39) |
missense |
probably benign |
0.00 |
R7496:Trim65
|
UTSW |
11 |
116,017,142 (GRCm39) |
missense |
probably damaging |
1.00 |
R7835:Trim65
|
UTSW |
11 |
116,021,755 (GRCm39) |
missense |
probably damaging |
1.00 |
R7849:Trim65
|
UTSW |
11 |
116,017,082 (GRCm39) |
missense |
probably damaging |
0.99 |
R8143:Trim65
|
UTSW |
11 |
116,017,287 (GRCm39) |
missense |
probably benign |
0.09 |
R8195:Trim65
|
UTSW |
11 |
116,017,037 (GRCm39) |
missense |
probably benign |
0.04 |
R8783:Trim65
|
UTSW |
11 |
116,017,143 (GRCm39) |
missense |
probably damaging |
1.00 |
R9158:Trim65
|
UTSW |
11 |
116,018,050 (GRCm39) |
missense |
probably benign |
0.01 |
R9740:Trim65
|
UTSW |
11 |
116,021,434 (GRCm39) |
missense |
probably benign |
0.26 |
R9751:Trim65
|
UTSW |
11 |
116,021,564 (GRCm39) |
missense |
probably benign |
0.01 |
X0061:Trim65
|
UTSW |
11 |
116,017,397 (GRCm39) |
missense |
probably benign |
0.39 |
X0066:Trim65
|
UTSW |
11 |
116,021,672 (GRCm39) |
missense |
probably benign |
0.25 |
|
Predicted Primers |
PCR Primer
(F):5'- TCAAGGAGGAGCTCACACAG -3'
(R):5'- GAGATTCAGTAGCCTGCTTCAG -3'
Sequencing Primer
(F):5'- CTAAGCAGCTGGTTCACGTTGC -3'
(R):5'- TGCTTCAGGCGCTGGAG -3'
|
Posted On |
2015-04-29 |