Mutagenetix > Incidental Mutation

Incidental Mutation 'R4013:Vmn1r214'

311831

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r214

Ensembl Gene

ENSMUSG00000061829

Gene Name

vomeronasal 1 receptor 214

Synonyms

V1rh5

MMRRC Submission

040950-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R4013 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

23218508-23219611 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 23219520 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Tyrosine at position 338 (C338Y)

Ref Sequence

ENSEMBL: ENSMUSP00000153823 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074252] [ENSMUST00000227236] [ENSMUST00000227652]

AlphaFold

Q8R279

Predicted Effect

probably benign
Transcript: ENSMUST00000074252
AA Change: C338Y

PolyPhen 2 Score 0.207 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000073868
Gene: ENSMUSG00000061829
AA Change: C338Y

Domain	Start	End	E-Value	Type
transmembrane domain	17	39	N/A	INTRINSIC
Pfam:TAS2R	42	346	7.5e-9	PFAM
Pfam:V1R	75	337	5.3e-32	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000227236
AA Change: C338Y

PolyPhen 2 Score 0.207 (Sensitivity: 0.92; Specificity: 0.88)

Predicted Effect

probably benign
Transcript: ENSMUST00000227652
AA Change: C338Y

PolyPhen 2 Score 0.207 (Sensitivity: 0.92; Specificity: 0.88)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.6%
20x: 92.4%

Validation Efficiency

98% (47/48)

Allele List at MGI

Other mutations in this stock

Total: 43 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc6	T	C	7: 45,668,104 (GRCm39)	Q168R	probably benign	Het
Adgrg3	A	G	8: 95,761,727 (GRCm39)		probably benign	Het
Apold1	A	G	6: 134,960,869 (GRCm39)	I108V	probably benign	Het
Atp6v0a2	G	A	5: 124,789,860 (GRCm39)	V429M	probably damaging	Het
Cbln4	A	T	2: 171,879,477 (GRCm39)	M137K	probably damaging	Het
Cfap57	A	G	4: 118,450,340 (GRCm39)	V594A	probably benign	Het
Chd9	A	G	8: 91,699,797 (GRCm39)	E28G	possibly damaging	Het
Clip4	T	A	17: 72,163,541 (GRCm39)	C704*	probably null	Het
Col8a2	T	A	4: 126,204,908 (GRCm39)		probably benign	Het
Cyp3a59	A	G	5: 146,016,193 (GRCm39)	T17A	probably benign	Het
Cyp4f14	G	A	17: 33,135,853 (GRCm39)	Q3*	probably null	Het
Cysltr2	A	G	14: 73,267,005 (GRCm39)	I235T	probably damaging	Het
Esp34	C	A	17: 38,870,446 (GRCm39)	C45*	probably null	Het
Gabrg2	T	C	11: 41,862,707 (GRCm39)	K126E	possibly damaging	Het
Gm4846	A	C	1: 166,322,249 (GRCm39)		probably null	Het
Igsf21	T	C	4: 139,764,780 (GRCm39)	N165S	possibly damaging	Het
Kcnf1	A	G	12: 17,225,994 (GRCm39)	F76L	probably benign	Het
Kcns1	A	G	2: 164,010,177 (GRCm39)	V194A	probably damaging	Het
Kdm5a	T	A	6: 120,371,067 (GRCm39)	Y504N	probably damaging	Het
Kdm5b	A	G	1: 134,555,067 (GRCm39)	Y1325C	possibly damaging	Het
Kif1a	T	C	1: 93,004,014 (GRCm39)	D156G	probably damaging	Het
Lrp1b	A	G	2: 40,692,996 (GRCm39)	F3401L	possibly damaging	Het
Lrrc63	A	G	14: 75,335,731 (GRCm39)	Y460H	probably damaging	Het
Myo15b	G	T	11: 115,762,282 (GRCm39)	E1201*	probably null	Het
Ndor1	A	T	2: 25,140,162 (GRCm39)	I84K	probably damaging	Het
Ndst4	T	A	3: 125,476,819 (GRCm39)	Y15N	probably damaging	Het
Or51af1	T	C	7: 103,141,840 (GRCm39)	T82A	probably benign	Het
Or5ar1	A	G	2: 85,671,725 (GRCm39)	S137P	probably damaging	Het
Pik3r6	T	A	11: 68,424,347 (GRCm39)	D317E	possibly damaging	Het
Ppp2r1a	G	A	17: 21,171,609 (GRCm39)	R28H	probably damaging	Het
Ptch1	T	G	13: 63,672,773 (GRCm39)	E944A	probably benign	Het
Ptpn12	G	A	5: 21,197,741 (GRCm39)	P700L	probably benign	Het
Setx	GTGGCT	GT	2: 29,044,073 (GRCm39)	1814	probably null	Het
Slc39a13	T	C	2: 90,895,247 (GRCm39)		probably null	Het
Smarca2	G	A	19: 26,661,327 (GRCm39)		probably null	Het
Taok1	A	T	11: 77,450,659 (GRCm39)	L371H	possibly damaging	Het
Tas2r116	A	G	6: 132,833,230 (GRCm39)	H277R	probably damaging	Het
Treml4	G	A	17: 48,571,837 (GRCm39)	R80Q	probably benign	Het
Trim9	G	A	12: 70,393,126 (GRCm39)	H273Y	probably damaging	Het
Tyr	A	G	7: 87,087,148 (GRCm39)	S455P	probably benign	Het
Vmn2r52	G	A	7: 9,904,603 (GRCm39)	T412I	probably benign	Het
Wdr70	A	T	15: 8,108,698 (GRCm39)	C149*	probably null	Het
Wdr93	T	A	7: 79,418,159 (GRCm39)	V294E	possibly damaging	Het

Other mutations in Vmn1r214

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01072:Vmn1r214	APN	13	23,219,300 (GRCm39)	missense	possibly damaging	0.58
IGL01759:Vmn1r214	APN	13	23,218,662 (GRCm39)	missense	probably benign	0.00
IGL02000:Vmn1r214	APN	13	23,219,270 (GRCm39)	missense	possibly damaging	0.90
R0115:Vmn1r214	UTSW	13	23,219,464 (GRCm39)	nonsense	probably null
R0468:Vmn1r214	UTSW	13	23,219,423 (GRCm39)	missense	probably benign	0.04
R0481:Vmn1r214	UTSW	13	23,219,464 (GRCm39)	nonsense	probably null
R0574:Vmn1r214	UTSW	13	23,218,663 (GRCm39)	missense	probably benign	0.19
R0686:Vmn1r214	UTSW	13	23,218,962 (GRCm39)	missense	probably damaging	1.00
R1931:Vmn1r214	UTSW	13	23,219,494 (GRCm39)	missense	possibly damaging	0.46
R3893:Vmn1r214	UTSW	13	23,218,811 (GRCm39)	missense	probably benign	0.00
R4014:Vmn1r214	UTSW	13	23,219,520 (GRCm39)	missense	probably benign	0.21
R4015:Vmn1r214	UTSW	13	23,219,520 (GRCm39)	missense	probably benign	0.21
R4670:Vmn1r214	UTSW	13	23,219,141 (GRCm39)	missense	probably benign	0.01
R5091:Vmn1r214	UTSW	13	23,219,571 (GRCm39)	missense	possibly damaging	0.46
R5817:Vmn1r214	UTSW	13	23,219,491 (GRCm39)	missense	probably damaging	0.98
R6504:Vmn1r214	UTSW	13	23,219,610 (GRCm39)	makesense	probably null
R7096:Vmn1r214	UTSW	13	23,219,196 (GRCm39)	missense	probably damaging	1.00
R7141:Vmn1r214	UTSW	13	23,218,839 (GRCm39)	missense	probably benign	0.41
R7293:Vmn1r214	UTSW	13	23,218,839 (GRCm39)	missense	probably benign	0.41
R7759:Vmn1r214	UTSW	13	23,218,631 (GRCm39)	missense	not run
R8805:Vmn1r214	UTSW	13	23,219,273 (GRCm39)	missense	possibly damaging	0.95
R8810:Vmn1r214	UTSW	13	23,219,082 (GRCm39)	missense	probably benign	0.36
R9383:Vmn1r214	UTSW	13	23,219,095 (GRCm39)	missense	probably benign	0.00
R9660:Vmn1r214	UTSW	13	23,219,007 (GRCm39)	missense	probably benign	0.00
R9711:Vmn1r214	UTSW	13	23,218,508 (GRCm39)	start codon destroyed	probably null	0.01
R9728:Vmn1r214	UTSW	13	23,219,007 (GRCm39)	missense	probably benign	0.00
X0002:Vmn1r214	UTSW	13	23,218,971 (GRCm39)	missense	probably damaging	0.98
Z1176:Vmn1r214	UTSW	13	23,218,665 (GRCm39)	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- TCCAAGCTTCTCTACAGAACTC -3'
(R):5'- AACCTCAGTGCAAGGCTTGAG -3'

Sequencing Primer
(F):5'- AGAACTCCCCCTGAGCTGAGAG -3'
(R):5'- CTCAGTGCAAGGCTTGAGTAACC -3'

Posted On

2015-04-29