Incidental Mutation 'R4016:Nipal2'
ID 311960
Institutional Source Beutler Lab
Gene Symbol Nipal2
Ensembl Gene ENSMUSG00000038879
Gene Name NIPA-like domain containing 2
Synonyms Npal2, 9330161F08Rik
MMRRC Submission 040847-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.064) question?
Stock # R4016 (G1)
Quality Score 225
Status Validated
Chromosome 15
Chromosomal Location 34572945-34679358 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 34600207 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Asparagine at position 203 (K203N)
Ref Sequence ENSEMBL: ENSMUSP00000038922 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040791] [ENSMUST00000228073]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000040791
AA Change: K203N

PolyPhen 2 Score 0.906 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000038922
Gene: ENSMUSG00000038879
AA Change: K203N

DomainStartEndE-ValueType
Pfam:Mg_trans_NIPA 45 332 1.5e-121 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000227222
Predicted Effect probably benign
Transcript: ENSMUST00000228073
Meta Mutation Damage Score 0.2410 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 93.4%
Validation Efficiency 100% (49/49)
Allele List at MGI
Other mutations in this stock
Total: 38 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aldh8a1 G A 10: 21,271,470 (GRCm39) V399I probably benign Het
Apold1 A G 6: 134,960,869 (GRCm39) I108V probably benign Het
Arpc5 G A 1: 152,644,607 (GRCm39) probably benign Het
Capn11 T A 17: 45,964,682 (GRCm39) D45V probably damaging Het
Dctpp1 G A 7: 126,856,285 (GRCm39) R146C probably damaging Het
Dlat C T 9: 50,560,931 (GRCm39) probably null Het
Dock10 T A 1: 80,584,286 (GRCm39) D140V probably damaging Het
Dtx3 A G 10: 127,027,040 (GRCm39) V378A probably benign Het
Ezh2 A G 6: 47,521,516 (GRCm39) I414T probably benign Het
Gm1979 C T 5: 26,209,604 (GRCm39) W41* probably null Het
Igf2bp2 T C 16: 21,882,426 (GRCm39) N425S probably damaging Het
Kdm5a T A 6: 120,371,067 (GRCm39) Y504N probably damaging Het
Map3k21 T A 8: 126,637,924 (GRCm39) I170N probably damaging Het
Mrgpra6 C A 7: 46,838,463 (GRCm39) C245F possibly damaging Het
Nlrp1b A G 11: 71,063,911 (GRCm39) F621S probably damaging Het
Nos3 G A 5: 24,576,714 (GRCm39) V448M probably damaging Het
Ntrk3 G T 7: 78,112,695 (GRCm39) probably benign Het
Or5b118 A T 19: 13,448,561 (GRCm39) T76S possibly damaging Het
P2rx1 T C 11: 72,900,799 (GRCm39) C190R probably damaging Het
Pdzrn4 T A 15: 92,297,630 (GRCm39) D198E probably benign Het
Ptar1 A G 19: 23,664,824 (GRCm39) M1V probably null Het
Ptch1 T G 13: 63,672,773 (GRCm39) E944A probably benign Het
Purg T A 8: 33,877,019 (GRCm39) L219* probably null Het
Rbp3 G T 14: 33,677,347 (GRCm39) V432L possibly damaging Het
Scnn1b G T 7: 121,513,555 (GRCm39) probably null Het
Sgms1 A G 19: 32,120,192 (GRCm39) V238A possibly damaging Het
Slc16a14 G T 1: 84,890,228 (GRCm39) S359* probably null Het
Smarca2 G A 19: 26,661,327 (GRCm39) probably null Het
Spatc1l A G 10: 76,398,323 (GRCm39) S42G probably benign Het
Stra6 T A 9: 58,042,473 (GRCm39) V34E probably damaging Het
Tex14 A G 11: 87,429,449 (GRCm39) probably null Het
Tox4 T C 14: 52,523,361 (GRCm39) probably null Het
Tyr A G 7: 87,087,148 (GRCm39) S455P probably benign Het
Uggt2 T C 14: 119,263,845 (GRCm39) N1062D possibly damaging Het
Umod A C 7: 119,075,913 (GRCm39) N284K possibly damaging Het
Unc93b1 T C 19: 3,993,572 (GRCm39) I338T probably damaging Het
Vmn2r99 C T 17: 19,598,832 (GRCm39) T172I possibly damaging Het
Whrn G A 4: 63,333,876 (GRCm39) Q415* probably null Het
Other mutations in Nipal2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00657:Nipal2 APN 15 34,600,224 (GRCm39) missense probably damaging 1.00
IGL01555:Nipal2 APN 15 34,600,264 (GRCm39) splice site probably benign
IGL02882:Nipal2 APN 15 34,600,223 (GRCm39) missense probably damaging 1.00
IGL03230:Nipal2 APN 15 34,575,702 (GRCm39) missense probably damaging 0.97
PIT4486001:Nipal2 UTSW 15 34,584,875 (GRCm39) missense probably damaging 0.99
R0603:Nipal2 UTSW 15 34,650,544 (GRCm39) missense probably damaging 0.97
R1255:Nipal2 UTSW 15 34,584,828 (GRCm39) missense probably benign 0.30
R1530:Nipal2 UTSW 15 34,625,168 (GRCm39) makesense probably null
R1673:Nipal2 UTSW 15 34,648,841 (GRCm39) missense probably damaging 0.99
R1857:Nipal2 UTSW 15 34,678,779 (GRCm39) missense possibly damaging 0.93
R1888:Nipal2 UTSW 15 34,625,167 (GRCm39) missense possibly damaging 0.49
R1888:Nipal2 UTSW 15 34,625,167 (GRCm39) missense possibly damaging 0.49
R3825:Nipal2 UTSW 15 34,578,852 (GRCm39) critical splice donor site probably null
R4656:Nipal2 UTSW 15 34,577,714 (GRCm39) critical splice donor site probably null
R6159:Nipal2 UTSW 15 34,600,172 (GRCm39) missense probably damaging 1.00
R7082:Nipal2 UTSW 15 34,584,809 (GRCm39) missense possibly damaging 0.95
R7263:Nipal2 UTSW 15 34,578,904 (GRCm39) nonsense probably null
R8135:Nipal2 UTSW 15 34,678,719 (GRCm39) missense possibly damaging 0.90
R8234:Nipal2 UTSW 15 34,600,178 (GRCm39) missense possibly damaging 0.93
R8525:Nipal2 UTSW 15 34,584,815 (GRCm39) missense probably damaging 0.99
R8993:Nipal2 UTSW 15 34,648,983 (GRCm39) nonsense probably null
R9511:Nipal2 UTSW 15 34,584,833 (GRCm39) missense probably damaging 1.00
X0065:Nipal2 UTSW 15 34,609,407 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- GCAAGCTTGTACCCAAATTAAGTTC -3'
(R):5'- TGCATTATAGTTGGCCCTGG -3'

Sequencing Primer
(F):5'- GTACCCAAATTAAGTTCATTAGTCCC -3'
(R):5'- CATTATAGTTGGCCCTGGGACTC -3'
Posted On 2015-04-29