Incidental Mutation 'R4025:Gm9920'
ID 313464
Institutional Source Beutler Lab
Gene Symbol Gm9920
Ensembl Gene ENSMUSG00000053749
Gene Name predicted gene 9920
Synonyms
MMRRC Submission 040958-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.072) question?
Stock # R4025 (G1)
Quality Score 128
Status Not validated
Chromosome 15
Chromosomal Location 54963313-54976978 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 54975966 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Glycine at position 25 (R25G)
Ref Sequence ENSEMBL: ENSMUSP00000098225 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000096433] [ENSMUST00000100659] [ENSMUST00000100660] [ENSMUST00000110230]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000096433
AA Change: R25G

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000094167
Gene: ENSMUSG00000022419
AA Change: R25G

DomainStartEndE-ValueType
low complexity region 4 21 N/A INTRINSIC
DEP 45 119 3.86e-21 SMART
DEP 146 219 1.37e-17 SMART
low complexity region 274 299 N/A INTRINSIC
PDZ 338 407 8.28e-7 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000100659
SMART Domains Protein: ENSMUSP00000098224
Gene: ENSMUSG00000053749

DomainStartEndE-ValueType
low complexity region 24 50 N/A INTRINSIC
low complexity region 57 67 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000100660
AA Change: R25G

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000098225
Gene: ENSMUSG00000022419
AA Change: R25G

DomainStartEndE-ValueType
low complexity region 4 21 N/A INTRINSIC
DEP 45 119 3.86e-21 SMART
DEP 146 219 1.37e-17 SMART
low complexity region 274 299 N/A INTRINSIC
Blast:PDZ 338 367 7e-14 BLAST
Predicted Effect noncoding transcript
Transcript: ENSMUST00000110230
SMART Domains Protein: ENSMUSP00000105859
Gene: ENSMUSG00000053749

DomainStartEndE-ValueType
low complexity region 24 50 N/A INTRINSIC
low complexity region 57 67 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137301
Predicted Effect noncoding transcript
Transcript: ENSMUST00000148544
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.0%
  • 20x: 94.1%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aoc1 A T 6: 48,885,203 (GRCm39) N646I probably damaging Het
Atad5 A G 11: 80,011,512 (GRCm39) D1293G probably damaging Het
Cacna1a C T 8: 85,307,962 (GRCm39) T1409I probably damaging Het
Cdk5rap2 T A 4: 70,168,624 (GRCm39) K1428N probably damaging Het
Clcn6 T A 4: 148,098,740 (GRCm39) T463S possibly damaging Het
Ctnna2 A T 6: 77,613,827 (GRCm39) D254E possibly damaging Het
Fbxl7 A G 15: 26,552,905 (GRCm39) S121P probably benign Het
Fezf2 A T 14: 12,343,986 (GRCm38) C302S probably damaging Het
Golgb1 C T 16: 36,735,706 (GRCm39) A1651V probably benign Het
Grk3 T A 5: 113,062,850 (GRCm39) N666Y possibly damaging Het
Mctp2 C A 7: 71,739,987 (GRCm39) C801F possibly damaging Het
Myo1e A G 9: 70,232,157 (GRCm39) I229V probably benign Het
Nutm2 A G 13: 50,623,389 (GRCm39) I29V probably benign Het
Odf2 C T 2: 29,816,827 (GRCm39) R763W probably damaging Het
Or8d4 T C 9: 40,038,796 (GRCm39) T154A probably benign Het
Papss2 T C 19: 32,629,323 (GRCm39) I304T probably damaging Het
Polr2a T A 11: 69,634,485 (GRCm39) I693F possibly damaging Het
Ppm1d T A 11: 85,236,583 (GRCm39) I454N probably benign Het
Ranbp2 A G 10: 58,316,378 (GRCm39) E2366G probably benign Het
Slc22a20 T C 19: 6,035,808 (GRCm39) T121A probably damaging Het
Slc4a3 T C 1: 75,525,685 (GRCm39) S262P probably damaging Het
Slfn4 A T 11: 83,078,040 (GRCm39) N276I probably damaging Het
Spag7 C A 11: 70,555,300 (GRCm39) E130D probably damaging Het
Spns1 A T 7: 125,976,118 (GRCm39) C28* probably null Het
Stab1 C T 14: 30,876,909 (GRCm39) G805D possibly damaging Het
Swi5 T C 2: 32,171,800 (GRCm39) D41G possibly damaging Het
Tasor2 T C 13: 3,634,554 (GRCm39) D751G probably damaging Het
Top2b T G 14: 16,409,189 (GRCm38) I777M probably damaging Het
Ugcg C T 4: 59,207,798 (GRCm39) P46S probably benign Het
Uxs1 T C 1: 43,841,776 (GRCm39) probably benign Het
Vmn1r34 T A 6: 66,614,688 (GRCm39) M17L probably benign Het
Xirp2 A G 2: 67,341,746 (GRCm39) D1329G probably benign Het
Other mutations in Gm9920
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0233:Gm9920 UTSW 15 54,975,857 (GRCm39) utr 5 prime probably benign
R2902:Gm9920 UTSW 15 54,975,867 (GRCm39) utr 5 prime probably benign
R5366:Gm9920 UTSW 15 54,975,705 (GRCm39) unclassified probably benign
R5377:Gm9920 UTSW 15 54,972,371 (GRCm39) unclassified probably benign
Predicted Primers PCR Primer
(F):5'- TTCCCCAGCATGAGTTTGGG -3'
(R):5'- TTTGCACGCACTGAGTGGTG -3'

Sequencing Primer
(F):5'- AATCGCGTCTGAGCCAC -3'
(R):5'- TGGCTGAAGCTGCTAGCCTC -3'
Posted On 2015-04-30