Incidental Mutation 'R0387:Dcp1a'
ID 31370
Institutional Source Beutler Lab
Gene Symbol Dcp1a
Ensembl Gene ENSMUSG00000021962
Gene Name decapping mRNA 1A
Synonyms SMIF, Mitc1, 1110066A22Rik, D14Ertd817e, 4930568L04Rik
MMRRC Submission 038593-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.262) question?
Stock # R0387 (G1)
Quality Score 165
Status Validated
Chromosome 14
Chromosomal Location 30201613-30249013 bp(+) (GRCm39)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) T to C at 30241636 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000022535 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000022535] [ENSMUST00000225196] [ENSMUST00000225286]
AlphaFold Q91YD3
Predicted Effect probably null
Transcript: ENSMUST00000022535
SMART Domains Protein: ENSMUSP00000022535
Gene: ENSMUSG00000021962

DomainStartEndE-ValueType
Pfam:DCP1 28 144 1.8e-44 PFAM
low complexity region 327 343 N/A INTRINSIC
low complexity region 457 472 N/A INTRINSIC
Pfam:mRNA_decap_C 559 601 6.3e-22 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000223568
Predicted Effect probably benign
Transcript: ENSMUST00000223658
Predicted Effect noncoding transcript
Transcript: ENSMUST00000223754
Predicted Effect noncoding transcript
Transcript: ENSMUST00000224692
Predicted Effect noncoding transcript
Transcript: ENSMUST00000224810
Predicted Effect probably benign
Transcript: ENSMUST00000225196
Predicted Effect noncoding transcript
Transcript: ENSMUST00000225124
Predicted Effect noncoding transcript
Transcript: ENSMUST00000225923
Predicted Effect noncoding transcript
Transcript: ENSMUST00000225655
Predicted Effect noncoding transcript
Transcript: ENSMUST00000225806
Predicted Effect noncoding transcript
Transcript: ENSMUST00000225521
Predicted Effect noncoding transcript
Transcript: ENSMUST00000225243
Predicted Effect probably benign
Transcript: ENSMUST00000225286
Predicted Effect noncoding transcript
Transcript: ENSMUST00000225934
Predicted Effect noncoding transcript
Transcript: ENSMUST00000225407
Meta Mutation Damage Score 0.9493 question?
Coding Region Coverage
  • 1x: 98.9%
  • 3x: 97.7%
  • 10x: 94.2%
  • 20x: 85.0%
Validation Efficiency 99% (77/78)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Decapping is a key step in general and regulated mRNA decay. The protein encoded by this gene is a decapping enzyme. This protein and another decapping enzyme form a decapping complex, which interacts with the nonsense-mediated decay factor hUpf1 and may be recruited to mRNAs containing premature termination codons. This protein also participates in the TGF-beta signaling pathway. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Feb 2014]
Allele List at MGI
Other mutations in this stock
Total: 79 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 T G 7: 119,932,075 (GRCm39) probably null Het
Abcc9 T A 6: 142,585,230 (GRCm39) K825* probably null Het
Afp T C 5: 90,645,150 (GRCm39) C189R probably damaging Het
Akap9 T C 5: 4,001,678 (GRCm39) probably benign Het
Alpk3 A T 7: 80,753,975 (GRCm39) T1652S possibly damaging Het
Atg4b C A 1: 93,714,278 (GRCm39) Q354K probably benign Het
Atxn2 T C 5: 121,940,206 (GRCm39) S388P possibly damaging Het
C2cd3 T A 7: 100,071,714 (GRCm39) probably benign Het
Cacna2d2 C A 9: 107,391,080 (GRCm39) T403K probably damaging Het
Cap2 C T 13: 46,713,992 (GRCm39) H79Y probably damaging Het
Car10 G T 11: 93,473,847 (GRCm39) probably null Het
Ccno T C 13: 113,126,401 (GRCm39) L290P probably damaging Het
Cfap69 T C 5: 5,639,303 (GRCm39) K624E probably damaging Het
Ctnna3 A G 10: 64,421,909 (GRCm39) M568V probably benign Het
Cyp1b1 C A 17: 80,021,203 (GRCm39) V180L probably benign Het
Cyp2u1 G T 3: 131,089,201 (GRCm39) probably null Het
Dnm1 C T 2: 32,210,593 (GRCm39) G1S possibly damaging Het
Dnmt1 A G 9: 20,829,509 (GRCm39) L698P probably damaging Het
Dock10 C A 1: 80,517,993 (GRCm39) C1327F probably damaging Het
Dph3b-ps A G 13: 106,683,363 (GRCm39) noncoding transcript Het
Dpyd G A 3: 119,220,875 (GRCm39) D949N probably benign Het
Dync2li1 A G 17: 84,962,768 (GRCm39) K345E possibly damaging Het
Eml2 T A 7: 18,916,184 (GRCm39) probably null Het
Exoc7 A G 11: 116,185,227 (GRCm39) probably benign Het
Faah A T 4: 115,862,889 (GRCm39) C113* probably null Het
Fcf1 T A 12: 85,019,776 (GRCm39) D16E probably benign Het
Fcgbp T C 7: 27,790,879 (GRCm39) probably benign Het
Ghr A G 15: 3,349,373 (GRCm39) S602P probably benign Het
Gm5114 T C 7: 39,058,233 (GRCm39) D462G probably benign Het
Gm8186 T A 17: 26,318,000 (GRCm39) S66C probably damaging Het
Gorab C T 1: 163,224,403 (GRCm39) V133M probably benign Het
Gria1 G A 11: 57,200,710 (GRCm39) probably null Het
Grik1 T A 16: 87,831,238 (GRCm39) probably benign Het
Gtf3c1 A G 7: 125,280,276 (GRCm39) L378P probably damaging Het
Htr5b A T 1: 121,455,275 (GRCm39) V215D probably damaging Het
Htra1 A G 7: 130,581,208 (GRCm39) T319A probably damaging Het
Idh2 C T 7: 79,748,005 (GRCm39) A232T probably damaging Het
Klrb1a A C 6: 128,586,697 (GRCm39) H189Q possibly damaging Het
Lhfpl6 A G 3: 52,950,749 (GRCm39) T8A probably benign Het
Ly75 T A 2: 60,136,748 (GRCm39) Y1493F probably benign Het
Mfsd5 T C 15: 102,189,531 (GRCm39) I301T possibly damaging Het
Mlkl C T 8: 112,059,982 (GRCm39) E135K probably damaging Het
Mrgprx2 A C 7: 48,148,908 (GRCm39) M1R probably null Het
Mroh2a G C 1: 88,173,764 (GRCm39) A871P probably damaging Het
Mtbp A G 15: 55,474,425 (GRCm39) I280V possibly damaging Het
Myo5c A T 9: 75,192,303 (GRCm39) probably benign Het
Nos3 A G 5: 24,572,583 (GRCm39) K174R probably damaging Het
Oas2 A T 5: 120,883,737 (GRCm39) probably benign Het
Or8b40 T A 9: 38,027,066 (GRCm39) probably null Het
Pi4kb G C 3: 94,892,051 (GRCm39) E256Q probably benign Het
Pik3c2a T A 7: 115,972,979 (GRCm39) I739F probably damaging Het
Pla2r1 T A 2: 60,262,945 (GRCm39) K1031N probably benign Het
Plk4 A T 3: 40,767,319 (GRCm39) probably benign Het
Polq T C 16: 36,849,792 (GRCm39) C349R probably damaging Het
Polq G T 16: 36,909,679 (GRCm39) E2354D probably damaging Het
Prss22 A G 17: 24,212,903 (GRCm39) L278P probably damaging Het
Prss3l A G 6: 41,420,303 (GRCm39) I141T possibly damaging Het
Ptprk G A 10: 28,230,625 (GRCm39) V239I possibly damaging Het
Raph1 T G 1: 60,549,655 (GRCm39) probably benign Het
Rif1 GCCACCA GCCA 2: 52,000,336 (GRCm39) probably benign Het
Ripor3 C T 2: 167,825,692 (GRCm39) W755* probably null Het
Rnd3 G T 2: 51,038,243 (GRCm39) D77E probably damaging Het
Ryr1 T C 7: 28,782,792 (GRCm39) probably benign Het
Serpinb1a C T 13: 33,032,721 (GRCm39) V63I probably benign Het
Six1 T G 12: 73,092,815 (GRCm39) Y129S probably damaging Het
Spata31d1a G A 13: 59,851,315 (GRCm39) T271I probably damaging Het
Stab1 T C 14: 30,870,058 (GRCm39) D1387G probably benign Het
Stra6 T A 9: 58,060,466 (GRCm39) M625K probably benign Het
Syne1 T C 10: 5,301,029 (GRCm39) S900G probably benign Het
Tdpoz4 A C 3: 93,704,007 (GRCm39) K101N probably benign Het
Tigd2 T C 6: 59,188,143 (GRCm39) Y337H probably benign Het
Tnxb A G 17: 34,902,548 (GRCm39) I1134V probably benign Het
Tspyl5 A G 15: 33,687,081 (GRCm39) I288T probably damaging Het
Ulk1 A G 5: 110,936,663 (GRCm39) V61A possibly damaging Het
Xxylt1 A G 16: 30,776,194 (GRCm39) Y381H probably benign Het
Zcchc9 T A 13: 91,949,066 (GRCm39) M12L probably benign Het
Zfp106 T C 2: 120,358,953 (GRCm39) probably null Het
Zfp74 T A 7: 29,634,179 (GRCm39) T510S probably benign Het
Zfp808 A G 13: 62,317,292 (GRCm39) T14A probably damaging Het
Other mutations in Dcp1a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01653:Dcp1a APN 14 30,227,528 (GRCm39) missense possibly damaging 0.52
IGL02698:Dcp1a APN 14 30,227,499 (GRCm39) splice site probably benign
IGL02799:Dcp1a UTSW 14 30,241,636 (GRCm39) critical splice donor site probably null
R0240:Dcp1a UTSW 14 30,206,551 (GRCm39) splice site probably benign
R0646:Dcp1a UTSW 14 30,224,842 (GRCm39) missense probably damaging 1.00
R1781:Dcp1a UTSW 14 30,235,032 (GRCm39) missense probably benign 0.37
R1843:Dcp1a UTSW 14 30,240,940 (GRCm39) missense probably damaging 0.99
R2111:Dcp1a UTSW 14 30,241,327 (GRCm39) missense probably benign 0.00
R3176:Dcp1a UTSW 14 30,227,499 (GRCm39) splice site probably benign
R4948:Dcp1a UTSW 14 30,201,724 (GRCm39) missense probably damaging 1.00
R5541:Dcp1a UTSW 14 30,224,796 (GRCm39) missense probably damaging 1.00
R6178:Dcp1a UTSW 14 30,245,261 (GRCm39) makesense probably null
R7767:Dcp1a UTSW 14 30,201,775 (GRCm39) critical splice donor site probably null
R7818:Dcp1a UTSW 14 30,201,678 (GRCm39) missense probably damaging 0.99
R8248:Dcp1a UTSW 14 30,244,883 (GRCm39) missense possibly damaging 0.87
R8248:Dcp1a UTSW 14 30,201,555 (GRCm39) intron probably benign
R8250:Dcp1a UTSW 14 30,244,883 (GRCm39) missense possibly damaging 0.87
R8271:Dcp1a UTSW 14 30,244,883 (GRCm39) missense possibly damaging 0.87
R8297:Dcp1a UTSW 14 30,244,883 (GRCm39) missense possibly damaging 0.87
R8302:Dcp1a UTSW 14 30,244,883 (GRCm39) missense possibly damaging 0.87
R8326:Dcp1a UTSW 14 30,241,527 (GRCm39) nonsense probably null
R8333:Dcp1a UTSW 14 30,244,883 (GRCm39) missense possibly damaging 0.87
R8818:Dcp1a UTSW 14 30,240,899 (GRCm39) missense possibly damaging 0.64
R9554:Dcp1a UTSW 14 30,201,691 (GRCm39) missense probably benign 0.01
R9599:Dcp1a UTSW 14 30,241,497 (GRCm39) missense probably benign
R9641:Dcp1a UTSW 14 30,241,132 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACAGCCGCTTGGAAAAGGAACC -3'
(R):5'- CACCTGCGTACAAGTCTACATGCC -3'

Sequencing Primer
(F):5'- CTTCTAAGACAGCAGCAGCA -3'
(R):5'- agacagacaagacagacacac -3'
Posted On 2013-04-24