Mutagenetix > Incidental Mutation

Incidental Mutation 'R4059:Lrrc36'

314387

Institutional Source

Beutler Lab

Gene Symbol

Lrrc36

Ensembl Gene

ENSMUSG00000054320

Gene Name

leucine rich repeat containing 36

Synonyms

MMRRC Submission

040970-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.198) question?

Stock #

R4059 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

106140230-106190718 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 106154428 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 33 (E33G)

Ref Sequence

ENSEMBL: ENSMUSP00000066345 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067305] [ENSMUST00000109355] [ENSMUST00000213547] [ENSMUST00000216765]

AlphaFold

Q3V0M2

Predicted Effect

probably damaging
Transcript: ENSMUST00000067305
AA Change: E33G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000066345
Gene: ENSMUSG00000054320
AA Change: E33G

Domain	Start	End	E-Value	Type
low complexity region	377	389	N/A	INTRINSIC
coiled coil region	478	550	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000109355
AA Change: E154G

PolyPhen 2 Score 0.018 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000104979
Gene: ENSMUSG00000054320
AA Change: E154G

Domain	Start	End	E-Value	Type
Pfam:LRR_8	24	84	2.9e-8	PFAM
low complexity region	500	512	N/A	INTRINSIC
coiled coil region	601	673	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128769

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139900

Predicted Effect

probably benign
Transcript: ENSMUST00000213547
AA Change: E154G

PolyPhen 2 Score 0.018 (Sensitivity: 0.95; Specificity: 0.80)

Predicted Effect

probably benign
Transcript: ENSMUST00000216765
AA Change: E154G

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

Meta Mutation Damage Score

0.0844

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.6%

Validation Efficiency

98% (54/55)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930453N24Rik	A	G	16: 64,586,821 (GRCm39)	V301A	probably benign	Het
Agbl3	T	C	6: 34,823,834 (GRCm39)	L833P	probably damaging	Het
Amph	T	C	13: 19,326,168 (GRCm39)	S633P	probably damaging	Het
Aspscr1	T	C	11: 120,577,505 (GRCm39)	V60A	probably benign	Het
Atp13a3	C	A	16: 30,173,064 (GRCm39)	C271F	possibly damaging	Het
B4galt3	C	A	1: 171,101,613 (GRCm39)	H196N	probably damaging	Het
BC051019	C	T	7: 109,317,202 (GRCm39)	W163*	probably null	Het
Capza1	T	C	3: 104,732,427 (GRCm39)	E245G	probably damaging	Het
Cd81	G	T	7: 142,619,030 (GRCm39)	C18F	probably damaging	Het
Cfap45	G	T	1: 172,366,056 (GRCm39)	R303L	probably benign	Het
Commd9	T	C	2: 101,725,499 (GRCm39)	V24A	possibly damaging	Het
Dennd4a	A	G	9: 64,819,174 (GRCm39)	N1742D	possibly damaging	Het
Dgat1	G	T	15: 76,388,371 (GRCm39)	A182D	possibly damaging	Het
Dlg4	T	C	11: 69,917,909 (GRCm39)	L64P	probably benign	Het
Dna2	A	G	10: 62,792,768 (GRCm39)	D261G	probably damaging	Het
Epb41l4b	C	T	4: 57,024,337 (GRCm39)		probably null	Het
Fam13c	T	C	10: 70,390,338 (GRCm39)	L533P	probably damaging	Het
Fjx1	T	C	2: 102,281,066 (GRCm39)	T290A	possibly damaging	Het
Hid1	C	T	11: 115,247,565 (GRCm39)	E278K	probably damaging	Het
Hsd3b7	T	C	7: 127,400,717 (GRCm39)	I57T	probably damaging	Het
Igfn1	A	G	1: 135,897,494 (GRCm39)	V1024A	probably benign	Het
Itgae	A	G	11: 73,002,960 (GRCm39)	K175E	probably benign	Het
Klhl32	T	C	4: 24,792,781 (GRCm39)	T14A	probably damaging	Het
Krt23	T	C	11: 99,376,614 (GRCm39)	T181A	probably benign	Het
Lmo2	T	C	2: 103,811,407 (GRCm39)	Y147H	probably damaging	Het
Mettl13	G	T	1: 162,373,755 (GRCm39)	H165Q	probably damaging	Het
Mocos	G	A	18: 24,812,447 (GRCm39)	G447D	probably damaging	Het
Ngef	T	A	1: 87,413,953 (GRCm39)	K399N	probably damaging	Het
Ntrk1	A	G	3: 87,688,786 (GRCm39)	L589P	probably damaging	Het
Or4c104	C	T	2: 88,586,795 (GRCm39)	V75I	probably benign	Het
Pcdha2	A	G	18: 37,072,935 (GRCm39)	S189G	probably benign	Het
Peg10	T	G	6: 4,756,427 (GRCm39)		probably benign	Het
Pkhd1l1	C	T	15: 44,414,156 (GRCm39)	H2808Y	probably benign	Het
Plekhg1	A	G	10: 3,907,087 (GRCm39)	D668G	probably damaging	Het
Ptcd2	A	G	13: 99,481,084 (GRCm39)	C32R	probably damaging	Het
Rgs8	A	G	1: 153,566,742 (GRCm39)	T98A	probably null	Het
Rhoh	G	A	5: 66,049,931 (GRCm39)	S67N	probably benign	Het
Rnd3	A	G	2: 51,038,760 (GRCm39)	F43L	probably damaging	Het
Runx1	A	G	16: 92,441,134 (GRCm39)	V225A	probably benign	Het
Runx1t1	T	C	4: 13,889,769 (GRCm39)	V566A	probably benign	Het
Sall2	A	G	14: 52,552,028 (GRCm39)	I387T	probably damaging	Het
Sec14l1	T	A	11: 117,040,024 (GRCm39)	V384D	possibly damaging	Het
Sh3rf3	T	C	10: 58,919,355 (GRCm39)	C491R	probably damaging	Het
Slc22a27	T	A	19: 7,856,973 (GRCm39)		probably benign	Het
Spire1	A	G	18: 67,678,783 (GRCm39)	S53P	probably damaging	Het
Tmco3	A	G	8: 13,370,848 (GRCm39)	R671G	probably benign	Het
Tmpo	A	G	10: 90,998,123 (GRCm39)	S555P	probably benign	Het
Tnip1	A	G	11: 54,802,395 (GRCm39)	S638P	probably benign	Het
Tspan8	C	T	10: 115,671,187 (GRCm39)	R115*	probably null	Het
Txnrd1	A	G	10: 82,721,114 (GRCm39)	E510G	probably benign	Het
Ucp3	T	C	7: 100,131,871 (GRCm39)	Y241H	probably damaging	Het
Vmn2r96	A	G	17: 18,818,339 (GRCm39)	I831V	probably benign	Het
Zan	T	C	5: 137,435,082 (GRCm39)	I2104V	unknown	Het
Zfp619	A	C	7: 39,184,823 (GRCm39)	R284S	probably benign	Het
Zfp715	T	C	7: 42,951,155 (GRCm39)	M48V	probably benign	Het

Other mutations in Lrrc36

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R1509:Lrrc36	UTSW	8	106,187,761 (GRCm39)	missense	probably damaging	1.00
R1638:Lrrc36	UTSW	8	106,176,273 (GRCm39)	missense	possibly damaging	0.92
R1800:Lrrc36	UTSW	8	106,176,397 (GRCm39)	missense	probably damaging	1.00
R2296:Lrrc36	UTSW	8	106,187,651 (GRCm39)	missense	possibly damaging	0.81
R4030:Lrrc36	UTSW	8	106,153,439 (GRCm39)	missense	probably damaging	1.00
R4613:Lrrc36	UTSW	8	106,176,246 (GRCm39)	missense	possibly damaging	0.95
R4755:Lrrc36	UTSW	8	106,178,776 (GRCm39)	missense	possibly damaging	0.83
R4786:Lrrc36	UTSW	8	106,181,910 (GRCm39)	missense	probably benign	0.01
R4828:Lrrc36	UTSW	8	106,181,862 (GRCm39)	missense	probably benign	0.45
R4911:Lrrc36	UTSW	8	106,153,567 (GRCm39)	missense	probably benign	0.26
R5135:Lrrc36	UTSW	8	106,190,530 (GRCm39)	missense	probably benign
R5221:Lrrc36	UTSW	8	106,170,488 (GRCm39)	missense	probably damaging	0.99
R5354:Lrrc36	UTSW	8	106,151,996 (GRCm39)	missense	probably damaging	0.99
R5635:Lrrc36	UTSW	8	106,184,205 (GRCm39)	missense	probably damaging	0.97
R6793:Lrrc36	UTSW	8	106,185,065 (GRCm39)	missense	probably damaging	1.00
R6950:Lrrc36	UTSW	8	106,152,021 (GRCm39)	splice site	probably null
R6986:Lrrc36	UTSW	8	106,185,079 (GRCm39)	missense	probably damaging	0.99
R7231:Lrrc36	UTSW	8	106,187,689 (GRCm39)	missense	possibly damaging	0.46
R7326:Lrrc36	UTSW	8	106,176,401 (GRCm39)	missense	possibly damaging	0.92
R7349:Lrrc36	UTSW	8	106,178,900 (GRCm39)	missense	probably damaging	1.00
R7728:Lrrc36	UTSW	8	106,176,130 (GRCm39)	missense	probably benign
R7751:Lrrc36	UTSW	8	106,178,667 (GRCm39)	missense	possibly damaging	0.83
R7988:Lrrc36	UTSW	8	106,178,718 (GRCm39)	missense	possibly damaging	0.81
R8145:Lrrc36	UTSW	8	106,170,396 (GRCm39)	missense	probably damaging	0.96
R8195:Lrrc36	UTSW	8	106,178,717 (GRCm39)	missense	possibly damaging	0.90
R8380:Lrrc36	UTSW	8	106,153,460 (GRCm39)	missense	probably damaging	1.00
R8499:Lrrc36	UTSW	8	106,176,168 (GRCm39)	missense	possibly damaging	0.66
R8986:Lrrc36	UTSW	8	106,176,093 (GRCm39)	missense	possibly damaging	0.83
U24488:Lrrc36	UTSW	8	106,176,384 (GRCm39)	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- CAACTGAGTTACTGCTTGCTCC -3'
(R):5'- AGAGGGCTTAGTTCTCGTCC -3'

Sequencing Primer
(F):5'- GCTTGCTCCAGTGACAACATAATAG -3'
(R):5'- TCTGCTGGAAAACGAGGA -3'

Posted On

2015-04-30