Mutagenetix > Incidental Mutation

Incidental Mutation 'R4133:Ints9'

314769

Institutional Source

Beutler Lab

Gene Symbol

Ints9

Ensembl Gene

ENSMUSG00000021975

Gene Name

integrator complex subunit 9

Synonyms

D14Ertd231e

MMRRC Submission

041637-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4133 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

65187494-65277284 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 65228003 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Arginine at position 103 (H103R)

Ref Sequence

ENSEMBL: ENSMUSP00000045552 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043914]

AlphaFold

Q8K114

Predicted Effect

probably benign
Transcript: ENSMUST00000043914
AA Change: H103R

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000045552
Gene: ENSMUSG00000021975
AA Change: H103R

Domain	Start	End	E-Value	Type
Pfam:Lactamase_B_6	91	289	1.2e-17	PFAM
Beta-Casp	334	462	7.65e-16	SMART
low complexity region	583	596	N/A	INTRINSIC
low complexity region	672	682	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000224593

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000225790

Meta Mutation Damage Score

0.0702

Coding Region Coverage

1x: 99.4%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

97% (77/79)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a subunit of the Integrator complex. This protein complex binds the C-terminal domain of RNA polymerase II and likely plays a role in small nuclear RNA processing. The encoded protein has similarities to the subunits of the cleavage and polyadenylation specificity factor complex. Alternatively spliced transcript variants have been described.[provided by RefSeq, Feb 2010]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700036A12Rik	T	A	9: 60,677,280 (GRCm39)		noncoding transcript	Het
Aldh3b1	A	G	19: 3,970,808 (GRCm39)	I184T	probably damaging	Het
Arhgap42	C	T	9: 9,011,300 (GRCm39)		probably benign	Het
Arhgef4	A	G	1: 34,845,185 (GRCm39)	D1463G	probably damaging	Het
Arpc5	A	G	1: 152,644,622 (GRCm39)	T52A	probably benign	Het
Asb6	A	G	2: 30,718,247 (GRCm39)		probably benign	Het
Ash1l	T	C	3: 88,889,567 (GRCm39)	V482A	probably benign	Het
Bop1	T	C	15: 76,338,535 (GRCm39)	N469S	probably benign	Het
Btaf1	T	A	19: 36,939,138 (GRCm39)	N266K	probably benign	Het
Btla	T	C	16: 45,059,661 (GRCm39)	Y122H	probably damaging	Het
Cacna1g	A	G	11: 94,323,370 (GRCm39)	M1278T	probably damaging	Het
Cdc42bpb	A	G	12: 111,287,976 (GRCm39)	S524P	probably benign	Het
Cep78	A	G	19: 15,946,519 (GRCm39)	S438P	probably damaging	Het
Clca4a	T	G	3: 144,675,113 (GRCm39)	E171D	probably benign	Het
Cldn6	A	T	17: 23,900,467 (GRCm39)	I144F	probably damaging	Het
Cpd	G	A	11: 76,705,644 (GRCm39)	Q363*	probably null	Het
Cpn1	G	A	19: 43,974,723 (GRCm39)	P2L	possibly damaging	Het
Ddx31	A	G	2: 28,748,864 (GRCm39)	D264G	probably damaging	Het
Ddx39b	C	T	17: 35,472,065 (GRCm39)	S368L	probably damaging	Het
Ddx60	A	G	8: 62,425,254 (GRCm39)	K681E	probably damaging	Het
Dennd1c	A	C	17: 57,383,980 (GRCm39)	W15G	possibly damaging	Het
Dgkd	T	G	1: 87,869,223 (GRCm39)		probably null	Het
Dnah7c	G	T	1: 46,705,150 (GRCm39)	A2388S	probably benign	Het
Etv4	C	A	11: 101,661,324 (GRCm39)	K442N	probably damaging	Het
Fam234a	T	C	17: 26,432,532 (GRCm39)	D539G	probably damaging	Het
Fancm	A	G	12: 65,167,304 (GRCm39)	T1538A	probably benign	Het
Fbn2	A	T	18: 58,229,034 (GRCm39)	N725K	possibly damaging	Het
Fcer2a	T	A	8: 3,741,130 (GRCm39)	N4I	possibly damaging	Het
Fgd5	T	C	6: 92,046,418 (GRCm39)	V1229A	probably damaging	Het
Garin4	A	T	1: 190,895,205 (GRCm39)	N479K	probably benign	Het
Gm5471	A	T	15: 44,835,297 (GRCm39)		noncoding transcript	Het
Gm5478	T	A	15: 101,553,080 (GRCm39)	I331F	probably damaging	Het
Gm6729	C	A	10: 86,377,030 (GRCm39)		noncoding transcript	Het
Hectd4	G	T	5: 121,415,897 (GRCm39)		probably null	Het
Hspb3	A	C	13: 113,800,027 (GRCm39)	M1R	probably null	Het
Igkv10-95	T	C	6: 68,657,601 (GRCm39)	V19A	probably damaging	Het
Il1rap	A	G	16: 26,541,636 (GRCm39)	S626G	probably benign	Het
Itga4	T	A	2: 79,152,996 (GRCm39)	D894E	probably damaging	Het
Khsrp	T	C	17: 57,332,605 (GRCm39)	H225R	probably benign	Het
Lama1	T	C	17: 68,057,650 (GRCm39)	Y575H	probably damaging	Het
Lama1	A	T	17: 68,119,481 (GRCm39)	I2653F	probably damaging	Het
Map4k5	A	T	12: 69,892,497 (GRCm39)	L144Q	probably damaging	Het
Mcm5	A	G	8: 75,842,482 (GRCm39)	Y252C	probably damaging	Het
Mmgt2	A	G	11: 62,555,877 (GRCm39)	E75G	probably damaging	Het
Mroh2a	A	T	1: 88,182,687 (GRCm39)	N1205I	possibly damaging	Het
Nckap5	A	G	1: 126,150,443 (GRCm39)	V162A	probably benign	Het
Nr3c2	T	C	8: 77,636,378 (GRCm39)	I493T	probably damaging	Het
Or2ag16	A	C	7: 106,352,286 (GRCm39)	L103R	probably damaging	Het
Or2t46	A	T	11: 58,471,901 (GRCm39)	Y77F	probably damaging	Het
Or9s15	T	C	1: 92,524,465 (GRCm39)	F75L	probably benign	Het
Papola	A	G	12: 105,765,917 (GRCm39)	T6A	possibly damaging	Het
Ppp1cc	G	A	5: 122,306,289 (GRCm39)	R36Q	probably benign	Het
Ptpro	G	T	6: 137,397,370 (GRCm39)	W81C	probably damaging	Het
Rasgrf2	A	G	13: 92,130,773 (GRCm39)	S162P	possibly damaging	Het
Rpusd2	T	C	2: 118,869,196 (GRCm39)	S540P	probably damaging	Het
Scn5a	T	A	9: 119,315,438 (GRCm39)	T1757S	probably damaging	Het
Setbp1	T	C	18: 78,900,206 (GRCm39)	I1154V	probably benign	Het
Sirt1	T	C	10: 63,171,438 (GRCm39)	I209V	probably null	Het
Slco6c1	T	A	1: 97,009,218 (GRCm39)	I406L	probably benign	Het
Smc2	A	G	4: 52,450,947 (GRCm39)	E255G	probably damaging	Het
Snap91	C	A	9: 86,659,102 (GRCm39)	G477V	probably damaging	Het
Speg	A	G	1: 75,404,548 (GRCm39)	Q2780R	probably benign	Het
Spmap2	T	C	10: 79,415,884 (GRCm39)	T236A	probably damaging	Het
Ssh2	A	G	11: 77,312,095 (GRCm39)	Y196C	probably damaging	Het
Ssxb9	A	T	X: 8,235,845 (GRCm39)	T18S	probably damaging	Het
Stxbp5l	T	C	16: 37,028,481 (GRCm39)	I527M	possibly damaging	Het
Tex10	T	C	4: 48,468,968 (GRCm39)	Y69C	probably damaging	Het
Thoc3	T	C	13: 54,616,361 (GRCm39)	D87G	probably benign	Het
Top2b	T	G	14: 16,409,189 (GRCm38)	I777M	probably damaging	Het
Trps1	T	C	15: 50,694,783 (GRCm39)	K213R	probably damaging	Het
Uggt1	A	T	1: 36,197,240 (GRCm39)	L1221Q	probably damaging	Het
Vmn2r3	T	A	3: 64,183,138 (GRCm39)	Y187F	probably damaging	Het
Washc2	G	A	6: 116,235,891 (GRCm39)	E1121K	probably damaging	Het
Zfx	T	C	X: 93,124,464 (GRCm39)	N360D	probably damaging	Het
Znhit3	A	G	11: 84,807,139 (GRCm39)	V10A	probably benign	Het

Other mutations in Ints9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01143:Ints9	APN	14	65,274,870 (GRCm39)	missense	probably benign	0.00
IGL02374:Ints9	APN	14	65,276,782 (GRCm39)	missense	probably benign	0.00
IGL02728:Ints9	APN	14	65,230,457 (GRCm39)	missense	probably damaging	1.00
IGL02992:Ints9	APN	14	65,217,613 (GRCm39)	missense	probably benign	0.08
IGL03151:Ints9	APN	14	65,269,789 (GRCm39)	missense	possibly damaging	0.86
R0437:Ints9	UTSW	14	65,223,818 (GRCm39)	splice site	probably benign
R0582:Ints9	UTSW	14	65,217,598 (GRCm39)	missense	probably damaging	1.00
R1525:Ints9	UTSW	14	65,232,460 (GRCm39)	missense	probably benign	0.05
R1569:Ints9	UTSW	14	65,217,571 (GRCm39)	missense	possibly damaging	0.91
R1835:Ints9	UTSW	14	65,269,705 (GRCm39)	missense	probably damaging	1.00
R1839:Ints9	UTSW	14	65,253,979 (GRCm39)	missense	probably damaging	1.00
R1862:Ints9	UTSW	14	65,263,862 (GRCm39)	missense	probably benign
R1892:Ints9	UTSW	14	65,257,872 (GRCm39)	missense	probably benign	0.08
R2146:Ints9	UTSW	14	65,223,792 (GRCm39)	missense	possibly damaging	0.71
R2285:Ints9	UTSW	14	65,245,446 (GRCm39)	missense	possibly damaging	0.61
R3015:Ints9	UTSW	14	65,187,727 (GRCm39)	missense	probably benign	0.00
R4180:Ints9	UTSW	14	65,230,430 (GRCm39)	missense	probably damaging	1.00
R4509:Ints9	UTSW	14	65,266,381 (GRCm39)	missense	possibly damaging	0.96
R4510:Ints9	UTSW	14	65,266,381 (GRCm39)	missense	possibly damaging	0.96
R4511:Ints9	UTSW	14	65,266,381 (GRCm39)	missense	possibly damaging	0.96
R4608:Ints9	UTSW	14	65,269,729 (GRCm39)	missense	possibly damaging	0.82
R5023:Ints9	UTSW	14	65,217,677 (GRCm39)	missense	probably damaging	1.00
R5117:Ints9	UTSW	14	65,230,540 (GRCm39)	nonsense	probably null
R5261:Ints9	UTSW	14	65,245,521 (GRCm39)	missense	probably benign	0.25
R5582:Ints9	UTSW	14	65,266,345 (GRCm39)	missense	possibly damaging	0.83
R5990:Ints9	UTSW	14	65,276,777 (GRCm39)	missense	probably damaging	1.00
R6009:Ints9	UTSW	14	65,245,531 (GRCm39)	missense	probably benign	0.43
R6241:Ints9	UTSW	14	65,217,659 (GRCm39)	missense	possibly damaging	0.90
R6351:Ints9	UTSW	14	65,230,456 (GRCm39)	missense	probably damaging	0.98
R6821:Ints9	UTSW	14	65,274,907 (GRCm39)	missense	probably benign	0.20
R7422:Ints9	UTSW	14	65,269,747 (GRCm39)	missense	possibly damaging	0.93
R7442:Ints9	UTSW	14	65,232,513 (GRCm39)	nonsense	probably null
R7475:Ints9	UTSW	14	65,263,914 (GRCm39)	missense	probably null	0.23
R8183:Ints9	UTSW	14	65,273,902 (GRCm39)	missense	probably damaging	0.98
R8223:Ints9	UTSW	14	65,257,809 (GRCm39)	missense	possibly damaging	0.94
R8282:Ints9	UTSW	14	65,244,757 (GRCm39)	missense	probably benign	0.00
R8314:Ints9	UTSW	14	65,266,479 (GRCm39)	missense	probably damaging	1.00
R8341:Ints9	UTSW	14	65,273,863 (GRCm39)	missense	probably benign	0.14
R8548:Ints9	UTSW	14	65,269,770 (GRCm39)	missense	probably benign	0.39
R9356:Ints9	UTSW	14	65,269,770 (GRCm39)	missense	probably benign	0.39
R9434:Ints9	UTSW	14	65,245,506 (GRCm39)	missense	probably benign	0.00
Z1176:Ints9	UTSW	14	65,274,903 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GTGTTTTCACCCTCAGTCGG -3'
(R):5'- GAAGGTTGCAAGAGTCAGTGCC -3'

Sequencing Primer
(F):5'- ACCCTCTCAGTTAGGTGAG -3'
(R):5'- AGAGTCAGTGCCATCTCTGATAC -3'

Posted On

2015-05-14