Mutagenetix > Incidental Mutation

Incidental Mutation 'R4110:Raly'

317236

Institutional Source

Beutler Lab

Gene Symbol

Raly

Ensembl Gene

ENSMUSG00000027593

Gene Name

hnRNP-associated with lethal yellow

Synonyms

Merc

MMRRC Submission

040988-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4110 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

154633016-154709181 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 154699378 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 61 (Q61*)

Ref Sequence

ENSEMBL: ENSMUSP00000119126 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029120] [ENSMUST00000058089] [ENSMUST00000109701] [ENSMUST00000116389] [ENSMUST00000125872] [ENSMUST00000129137] [ENSMUST00000137333] [ENSMUST00000140713]

AlphaFold

Q64012

Predicted Effect

probably null
Transcript: ENSMUST00000029120
AA Change: Q61*

SMART Domains

Protein: ENSMUSP00000029120
Gene: ENSMUSG00000027593
AA Change: Q61*

Domain	Start	End	E-Value	Type
RRM	22	88	4.01e-14	SMART
low complexity region	109	123	N/A	INTRINSIC
low complexity region	133	160	N/A	INTRINSIC
low complexity region	227	259	N/A	INTRINSIC
low complexity region	287	301	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000058089
AA Change: Q61*

SMART Domains

Protein: ENSMUSP00000058105
Gene: ENSMUSG00000027593
AA Change: Q61*

Domain	Start	End	E-Value	Type
RRM	22	88	4.01e-14	SMART
low complexity region	117	144	N/A	INTRINSIC
low complexity region	211	243	N/A	INTRINSIC
low complexity region	271	285	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000109701
AA Change: Q61*

SMART Domains

Protein: ENSMUSP00000105323
Gene: ENSMUSG00000027593
AA Change: Q61*

Domain	Start	End	E-Value	Type
RRM	22	88	4.01e-14	SMART
low complexity region	117	144	N/A	INTRINSIC
low complexity region	211	243	N/A	INTRINSIC
low complexity region	271	285	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000116389
AA Change: Q61*

SMART Domains

Protein: ENSMUSP00000112090
Gene: ENSMUSG00000027593
AA Change: Q61*

Domain	Start	End	E-Value	Type
RRM	22	88	4.01e-14	SMART
low complexity region	109	123	N/A	INTRINSIC
low complexity region	133	160	N/A	INTRINSIC
low complexity region	227	259	N/A	INTRINSIC
low complexity region	287	301	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000125872
AA Change: Q61*

SMART Domains

Protein: ENSMUSP00000119108
Gene: ENSMUSG00000027593
AA Change: Q61*

Domain	Start	End	E-Value	Type
RRM	22	88	1.6e-16	SMART
low complexity region	120	140	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000129137
AA Change: Q61*

SMART Domains

Protein: ENSMUSP00000114185
Gene: ENSMUSG00000027593
AA Change: Q61*

Domain	Start	End	E-Value	Type
RRM	22	88	1.6e-16	SMART
low complexity region	117	144	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000137333

SMART Domains

Protein: ENSMUSP00000122261
Gene: ENSMUSG00000027596

Domain	Start	End	E-Value	Type
Agouti	6	70	2.53e-4	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000140713
AA Change: Q61*

SMART Domains

Protein: ENSMUSP00000119126
Gene: ENSMUSG00000027593
AA Change: Q61*

Domain	Start	End	E-Value	Type
RRM	22	88	4.01e-14	SMART
low complexity region	109	123	N/A	INTRINSIC
low complexity region	133	160	N/A	INTRINSIC
low complexity region	227	259	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145202

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151578

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.3%
20x: 95.6%

Validation Efficiency

100% (61/61)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the heterogeneous nuclear ribonucleoprotein (hnRNP) gene family. This protein may play a role in pre-mRNA splicing and in embryonic development. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]
PHENOTYPE: Mice homozygous for a gene trap allele are viable. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700012B07Rik	G	T	11: 109,684,980 (GRCm39)	C172*	probably null	Het
Acot10	A	T	15: 20,666,612 (GRCm39)	L43Q	probably damaging	Het
Alms1	G	A	6: 85,597,870 (GRCm39)	V1368I	probably benign	Het
Als2cl	T	C	9: 110,713,115 (GRCm39)	S2P	probably benign	Het
AW209491	T	C	13: 14,812,158 (GRCm39)	V337A	probably damaging	Het
Bace2	A	G	16: 97,237,856 (GRCm39)	T436A	probably benign	Het
BC023105	A	G	18: 60,575,356 (GRCm39)		noncoding transcript	Het
Blvra	T	C	2: 126,937,075 (GRCm39)	V176A	probably damaging	Het
Casp2	G	A	6: 42,244,828 (GRCm39)	A76T	probably damaging	Het
Ccdc88c	A	G	12: 100,911,332 (GRCm39)	L34P	probably damaging	Het
Cep250	G	A	2: 155,834,552 (GRCm39)	R2159K	probably damaging	Het
Col6a2	T	A	10: 76,442,003 (GRCm39)		probably null	Het
Cse1l	T	C	2: 166,783,970 (GRCm39)	Y488H	probably benign	Het
Dip2c	G	T	13: 9,687,137 (GRCm39)	G1254C	probably damaging	Het
Dnajb12	T	A	10: 59,730,136 (GRCm39)	S270R	possibly damaging	Het
Dnajc28	G	A	16: 91,413,755 (GRCm39)	T187M	probably damaging	Het
Dscaml1	G	A	9: 45,643,366 (GRCm39)	A1262T	probably benign	Het
Dtwd2	A	C	18: 49,831,373 (GRCm39)		probably benign	Het
Fadd	C	A	7: 144,134,488 (GRCm39)	K132N	possibly damaging	Het
Fndc3c1	T	C	X: 105,487,897 (GRCm39)	N462S	probably benign	Het
Fzd3	A	G	14: 65,472,616 (GRCm39)	V384A	probably benign	Het
Gm6370	T	C	5: 146,430,702 (GRCm39)	S296P	probably benign	Het
Gsdmc	T	A	15: 63,651,876 (GRCm39)	H245L	probably benign	Het
H13	T	C	2: 152,523,029 (GRCm39)	I114T	probably damaging	Het
Hhipl2	A	G	1: 183,204,920 (GRCm39)	R78G	probably benign	Het
Hrh3	C	A	2: 179,744,643 (GRCm39)	R99L	possibly damaging	Het
Ldc1	A	T	4: 130,112,967 (GRCm39)	L143Q	probably damaging	Het
Man2c1	A	G	9: 57,044,055 (GRCm39)	N330S	probably damaging	Het
Muc19	T	A	15: 91,781,816 (GRCm39)		noncoding transcript	Het
Myh14	T	G	7: 44,277,974 (GRCm39)	M1092L	probably benign	Het
Neb	A	G	2: 52,038,778 (GRCm39)	I2899T	probably benign	Het
Neb	T	A	2: 52,134,137 (GRCm39)	Q3282L	probably damaging	Het
Nqo2	A	T	13: 34,163,620 (GRCm39)	Q93L	probably benign	Het
Or13a18	T	A	7: 140,190,178 (GRCm39)	L33Q	possibly damaging	Het
Or13a18	C	A	7: 140,190,177 (GRCm39)	L33M	probably benign	Het
Or4a2	C	A	2: 89,248,444 (GRCm39)	L104F	probably benign	Het
Or51i2	T	C	7: 103,689,609 (GRCm39)	V202A	probably damaging	Het
Pcsk1	A	G	13: 75,244,488 (GRCm39)	N122S	probably damaging	Het
Pdzrn4	A	G	15: 92,668,745 (GRCm39)	I966V	probably benign	Het
Phldb1	G	A	9: 44,627,128 (GRCm39)	T439I	possibly damaging	Het
Pign	A	G	1: 105,481,540 (GRCm39)		probably benign	Het
Pkn1	A	T	8: 84,417,828 (GRCm39)	D120E	probably benign	Het
Ptpru	A	G	4: 131,546,348 (GRCm39)	Y301H	probably damaging	Het
Rpl24	T	C	16: 55,791,723 (GRCm39)	V148A	probably benign	Het
S100a16	A	G	3: 90,449,379 (GRCm39)	N18S	probably damaging	Het
Sec31b	G	T	19: 44,512,968 (GRCm39)	T507N	possibly damaging	Het
Sgca	T	C	11: 94,863,396 (GRCm39)	T27A	possibly damaging	Het
Slc22a12	C	A	19: 6,590,658 (GRCm39)	R203L	probably damaging	Het
Ssbp3	C	A	4: 106,904,393 (GRCm39)		probably benign	Het
Sucnr1	C	G	3: 59,994,215 (GRCm39)	R248G	probably damaging	Het
Tbr1	C	T	2: 61,642,076 (GRCm39)	P184L	probably benign	Het
Thsd7b	A	T	1: 130,044,356 (GRCm39)	D1112V	probably benign	Het
Tnc	A	G	4: 63,933,188 (GRCm39)	V692A	probably damaging	Het
Top2a	C	A	11: 98,913,786 (GRCm39)	K18N	probably damaging	Het
Topbp1	G	T	9: 103,187,158 (GRCm39)	R121L	probably damaging	Het
Unc79	T	C	12: 103,025,629 (GRCm39)	C339R	probably damaging	Het
Wdfy3	C	T	5: 102,047,924 (GRCm39)		probably null	Het
Zbtb3	G	C	19: 8,780,384 (GRCm39)		probably benign	Het
Zfp715	T	A	7: 42,947,304 (GRCm39)	K885N	possibly damaging	Het

Other mutations in Raly

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01838:Raly	APN	2	154,701,590 (GRCm39)	splice site	probably benign
IGL02164:Raly	APN	2	154,701,849 (GRCm39)	nonsense	probably null
R0227:Raly	UTSW	2	154,707,841 (GRCm39)	missense	probably damaging	0.98
R1412:Raly	UTSW	2	154,699,315 (GRCm39)	missense	possibly damaging	0.95
R1416:Raly	UTSW	2	154,699,273 (GRCm39)	nonsense	probably null
R2247:Raly	UTSW	2	154,705,953 (GRCm39)	missense	possibly damaging	0.92
R4533:Raly	UTSW	2	154,707,853 (GRCm39)	missense	probably damaging	0.98
R4654:Raly	UTSW	2	154,699,376 (GRCm39)	missense	probably damaging	1.00
R4866:Raly	UTSW	2	154,703,816 (GRCm39)	missense	probably damaging	0.99
R5395:Raly	UTSW	2	154,705,927 (GRCm39)	splice site	probably null
R6254:Raly	UTSW	2	154,699,286 (GRCm39)	missense	probably damaging	1.00
R6887:Raly	UTSW	2	154,703,830 (GRCm39)	missense	probably damaging	0.99
R7069:Raly	UTSW	2	154,701,664 (GRCm39)	missense	possibly damaging	0.93
R7117:Raly	UTSW	2	154,699,432 (GRCm39)	missense	probably benign	0.35
R7289:Raly	UTSW	2	154,703,774 (GRCm39)	missense	probably damaging	1.00
R7311:Raly	UTSW	2	154,699,340 (GRCm39)	missense	probably damaging	1.00
R8900:Raly	UTSW	2	154,705,493 (GRCm39)	missense	probably damaging	1.00
R9117:Raly	UTSW	2	154,703,785 (GRCm39)	missense	probably damaging	1.00
R9546:Raly	UTSW	2	154,705,754 (GRCm39)	small deletion	probably benign
R9550:Raly	UTSW	2	154,705,754 (GRCm39)	small deletion	probably benign
R9781:Raly	UTSW	2	154,699,265 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGAACCCAGTTTCACATTGGC -3'
(R):5'- GCTCCTATAACAATCCCCTATTTAACG -3'

Sequencing Primer
(F):5'- GTGAACACCATGTCCTTGAAG -3'
(R):5'- ATCCCCTATTTAACGCTCATTTAAG -3'

Posted On

2015-05-15