Incidental Mutation 'R4095:Foxn3'
ID 317874
Institutional Source Beutler Lab
Gene Symbol Foxn3
Ensembl Gene ENSMUSG00000033713
Gene Name forkhead box N3
Synonyms Ches1l, Ches1, 5430426H20Rik, HTLFL1
MMRRC Submission 040858-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.786) question?
Stock # R4095 (G1)
Quality Score 225
Status Validated
Chromosome 12
Chromosomal Location 99156337-99529841 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 99162700 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 400 (D400E)
Ref Sequence ENSEMBL: ENSMUSP00000135082 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000046859] [ENSMUST00000085108] [ENSMUST00000177451] [ENSMUST00000222458]
AlphaFold Q499D0
Predicted Effect probably damaging
Transcript: ENSMUST00000046859
AA Change: D400E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000036035
Gene: ENSMUSG00000033713
AA Change: D400E

DomainStartEndE-ValueType
low complexity region 8 23 N/A INTRINSIC
FH 112 204 2.48e-51 SMART
low complexity region 308 331 N/A INTRINSIC
low complexity region 342 363 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000085108
AA Change: D400E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000082189
Gene: ENSMUSG00000033713
AA Change: D400E

DomainStartEndE-ValueType
low complexity region 8 23 N/A INTRINSIC
FH 112 204 2.48e-51 SMART
low complexity region 308 331 N/A INTRINSIC
low complexity region 342 363 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176959
Predicted Effect probably damaging
Transcript: ENSMUST00000177451
AA Change: D400E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000135082
Gene: ENSMUSG00000033713
AA Change: D400E

DomainStartEndE-ValueType
low complexity region 8 23 N/A INTRINSIC
FH 112 204 2.48e-51 SMART
low complexity region 308 331 N/A INTRINSIC
low complexity region 342 363 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000185441
Predicted Effect noncoding transcript
Transcript: ENSMUST00000222261
Predicted Effect probably benign
Transcript: ENSMUST00000222458
Meta Mutation Damage Score 0.0597 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.8%
Validation Efficiency 97% (59/61)
MGI Phenotype PHENOTYPE: Hypomorphic homozygous knockout affects the expression of osteogenic genes and leads to craniofacial abnormalities and reduces pre- and postnatal survival. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Akap6 A T 12: 53,186,245 (GRCm39) I1220L probably damaging Het
Alas1 G T 9: 106,119,000 (GRCm39) probably null Het
Apba1 A T 19: 23,921,388 (GRCm39) Q737L probably benign Het
Arvcf T A 16: 18,220,327 (GRCm39) D564E probably damaging Het
Bcl11b G T 12: 107,883,094 (GRCm39) P335Q probably damaging Het
Brd9 G A 13: 74,092,918 (GRCm39) V302I probably benign Het
Brinp3 C A 1: 146,777,430 (GRCm39) H626N possibly damaging Het
C1qc T C 4: 136,617,637 (GRCm39) N153S probably benign Het
Casp3 G A 8: 47,087,251 (GRCm39) G66D probably damaging Het
Coq7 T G 7: 118,126,701 (GRCm39) probably null Het
Dach1 C T 14: 98,138,815 (GRCm39) V491M possibly damaging Het
Dda1 A G 8: 71,926,436 (GRCm39) T52A possibly damaging Het
Entpd7 A G 19: 43,692,640 (GRCm39) Y65C probably damaging Het
Fmnl2 A G 2: 52,991,535 (GRCm39) D350G probably damaging Het
Gbp2 A G 3: 142,343,210 (GRCm39) T576A probably benign Het
Gm15446 T A 5: 110,088,590 (GRCm39) probably null Het
Gtf2a1 G T 12: 91,542,411 (GRCm39) T57K possibly damaging Het
Hps5 T C 7: 46,425,218 (GRCm39) E494G probably benign Het
Htr2a G A 14: 74,943,789 (GRCm39) M456I probably benign Het
Hydin A G 8: 111,268,179 (GRCm39) N2886S probably damaging Het
Ighv2-6-8 T C 12: 113,759,773 (GRCm39) Y112C probably damaging Het
Kcnf1 A T 12: 17,225,480 (GRCm39) L247Q possibly damaging Het
Kndc1 A G 7: 139,516,938 (GRCm39) M1606V possibly damaging Het
Krt27 T C 11: 99,236,619 (GRCm39) T431A probably benign Het
Lama4 A T 10: 38,973,118 (GRCm39) I1562F probably damaging Het
Lrig1 T C 6: 94,590,559 (GRCm39) D487G probably benign Het
Lrp1b G A 2: 41,339,203 (GRCm39) T880I probably benign Het
Ltbp4 A G 7: 27,024,641 (GRCm39) V663A possibly damaging Het
Mapt T C 11: 104,201,362 (GRCm39) probably null Het
Mpdz A T 4: 81,302,060 (GRCm39) V229D possibly damaging Het
Or10am5 T A 7: 6,518,252 (GRCm39) S59C possibly damaging Het
Or6e1 T C 14: 54,520,188 (GRCm39) T55A probably benign Het
Or8s10 T C 15: 98,335,563 (GRCm39) L71P probably damaging Het
Parm1 T C 5: 91,742,039 (GRCm39) S136P probably benign Het
Pcdhgb2 T A 18: 37,824,003 (GRCm39) S331R probably benign Het
Pdxk T C 10: 78,300,644 (GRCm39) H13R probably damaging Het
Ppp1r12c T C 7: 4,486,366 (GRCm39) E601G probably damaging Het
Rell1 C A 5: 64,126,013 (GRCm39) V22L probably benign Het
Sema6c T A 3: 95,080,505 (GRCm39) L901Q probably benign Het
Sfswap A G 5: 129,637,805 (GRCm39) S821G possibly damaging Het
Slc22a23 A G 13: 34,489,189 (GRCm39) L116P probably damaging Het
Slit1 A T 19: 41,596,925 (GRCm39) probably benign Het
Spns1 T C 7: 125,969,958 (GRCm39) T481A probably damaging Het
Tmem104 T A 11: 115,134,749 (GRCm39) Y427* probably null Het
Tmem74 G A 15: 43,730,678 (GRCm39) Q122* probably null Het
Tnpo2 T A 8: 85,765,048 (GRCm39) L10Q probably damaging Het
Trav6-2 G T 14: 52,905,272 (GRCm39) A98S probably benign Het
Ttll5 A T 12: 86,003,376 (GRCm39) R214* probably null Het
Ube2b A C 11: 51,888,654 (GRCm39) V39G possibly damaging Het
Vmn1r185 A T 7: 26,311,208 (GRCm39) V99E probably damaging Het
Wnk1 G A 6: 119,925,087 (GRCm39) T1459I probably damaging Het
Zc3h7a T C 16: 10,963,099 (GRCm39) K754R probably damaging Het
Zfp605 A G 5: 110,275,602 (GRCm39) K240R probably damaging Het
Zfp61 A G 7: 23,990,700 (GRCm39) probably null Het
Other mutations in Foxn3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00715:Foxn3 APN 12 99,162,866 (GRCm39) missense possibly damaging 0.90
R0521:Foxn3 UTSW 12 99,175,765 (GRCm39) missense probably benign 0.00
R2248:Foxn3 UTSW 12 99,162,815 (GRCm39) missense probably benign 0.08
R4094:Foxn3 UTSW 12 99,162,700 (GRCm39) missense probably damaging 1.00
R5276:Foxn3 UTSW 12 99,162,687 (GRCm39) nonsense probably null
R6207:Foxn3 UTSW 12 99,162,569 (GRCm39) missense probably damaging 1.00
R6270:Foxn3 UTSW 12 99,354,676 (GRCm39) missense probably damaging 1.00
R6364:Foxn3 UTSW 12 99,354,952 (GRCm39) missense probably benign 0.42
R6379:Foxn3 UTSW 12 99,162,537 (GRCm39) missense probably benign
R7443:Foxn3 UTSW 12 99,355,038 (GRCm39) missense possibly damaging 0.61
R7741:Foxn3 UTSW 12 99,162,587 (GRCm39) missense probably damaging 1.00
R8021:Foxn3 UTSW 12 99,355,161 (GRCm39) start codon destroyed probably null 0.99
R8365:Foxn3 UTSW 12 99,307,727 (GRCm39) missense probably damaging 0.96
R8390:Foxn3 UTSW 12 99,355,000 (GRCm39) missense probably benign 0.00
R8811:Foxn3 UTSW 12 99,162,951 (GRCm39) missense probably benign 0.34
R9085:Foxn3 UTSW 12 99,355,095 (GRCm39) missense probably damaging 0.97
R9581:Foxn3 UTSW 12 99,163,035 (GRCm39) missense probably damaging 0.98
R9594:Foxn3 UTSW 12 99,359,294 (GRCm39) intron probably benign
Z1177:Foxn3 UTSW 12 99,354,856 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- CATGCTGAAACCAAATGGCC -3'
(R):5'- AGTTTGCTACGAAGGGGAGC -3'

Sequencing Primer
(F):5'- TGCTGAAACCAAATGGCCATAAGTTC -3'
(R):5'- CTACGAAGGGGAGCCAGGAG -3'
Posted On 2015-05-15