Mutagenetix > Incidental Mutation

Incidental Mutation 'R1960:Carm1'

318049

Institutional Source

Beutler Lab

Gene Symbol

Carm1

Ensembl Gene

ENSMUSG00000032185

Gene Name

coactivator-associated arginine methyltransferase 1

Synonyms

m9Bei, Prmt4

MMRRC Submission

039974-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1960 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

21458163-21500763 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 21491606 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glycine at position 225 (V225G)

Ref Sequence

ENSEMBL: ENSMUSP00000111052 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034703] [ENSMUST00000115394] [ENSMUST00000115395] [ENSMUST00000130032]

AlphaFold

Q9WVG6

Predicted Effect

probably benign
Transcript: ENSMUST00000034703
AA Change: V225G

PolyPhen 2 Score 0.128 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000034703
Gene: ENSMUSG00000032185
AA Change: V225G

Domain	Start	End	E-Value	Type
Pfam:CARM1	27	140	2.1e-71	PFAM
Pfam:PRMT5	144	447	2.3e-16	PFAM
Pfam:MTS	166	308	2.7e-10	PFAM
Pfam:Methyltransf_9	168	318	1.1e-9	PFAM
Pfam:PrmA	173	287	2.2e-12	PFAM
Pfam:Methyltransf_31	183	325	7.4e-11	PFAM
Pfam:Methyltransf_18	185	290	5.1e-12	PFAM
Pfam:Methyltransf_26	186	287	5.3e-10	PFAM
Pfam:Methyltransf_11	190	287	8.5e-7	PFAM
low complexity region	477	494	N/A	INTRINSIC
low complexity region	562	576	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000115394
AA Change: V225G

PolyPhen 2 Score 0.396 (Sensitivity: 0.89; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000111052
Gene: ENSMUSG00000032185
AA Change: V225G

Domain	Start	End	E-Value	Type
Pfam:CARM1	29	140	4.7e-63	PFAM
Pfam:PRMT5	145	447	4.1e-16	PFAM
Pfam:Methyltransf_9	168	318	1.4e-9	PFAM
Pfam:MTS	170	299	2.5e-9	PFAM
Pfam:PrmA	175	287	3.7e-12	PFAM
Pfam:Methyltransf_31	183	326	1.9e-10	PFAM
Pfam:Methyltransf_18	185	290	4e-9	PFAM
Pfam:Methyltransf_11	190	287	6.5e-7	PFAM
low complexity region	477	494	N/A	INTRINSIC
low complexity region	606	619	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000115395
AA Change: V225G

PolyPhen 2 Score 0.128 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000111053
Gene: ENSMUSG00000032185
AA Change: V225G

Domain	Start	End	E-Value	Type
Pfam:CARM1	27	140	2e-71	PFAM
Pfam:PRMT5	144	447	2.1e-16	PFAM
Pfam:MTS	166	308	2.6e-10	PFAM
Pfam:Methyltransf_9	168	318	1.1e-9	PFAM
Pfam:PrmA	172	287	2.1e-12	PFAM
Pfam:Methyltransf_31	183	326	6.9e-11	PFAM
Pfam:Methyltransf_18	185	290	4.8e-12	PFAM
Pfam:Methyltransf_26	186	287	5e-10	PFAM
Pfam:Methyltransf_11	190	287	8.1e-7	PFAM
low complexity region	477	494	N/A	INTRINSIC
low complexity region	540	553	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000130032

SMART Domains

Protein: ENSMUSP00000117243
Gene: ENSMUSG00000032185

Domain	Start	End	E-Value	Type
Pfam:CARM1	27	140	2.8e-73	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139871

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147749

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154049

Meta Mutation Damage Score

0.1886

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.9%

Validation Efficiency

100% (95/95)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the protein arginine methyltransferase (PRMT) family. The encoded enzyme catalyzes the methylation of guanidino nitrogens of arginyl residues of proteins. The enzyme acts specifically on histones and other chromatin-associated proteins and is involved in regulation of gene expression. The enzyme may act in association with other proteins or within multi-protein complexes and may play a role in cell type-specific functions and cell lineage specification. A related pseudogene is located on chromosome 9. [provided by RefSeq, Aug 2013]
PHENOTYPE: Homozygous null fetuses are small and die perinatally, whereas heterozygotes are born at the expected Mendelian ratio but show decreased survival through weaning. Mice homozygous for a kinase null allele exhibit neonatal lethality, arrested T cell development, and impaired adipogenesis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410004B18Rik	C	T	3: 145,643,976 (GRCm39)	P55S	probably damaging	Het
Adgre4	T	C	17: 56,098,497 (GRCm39)	S136P	probably benign	Het
Aoc1l1	C	T	6: 48,952,687 (GRCm39)	T204I	probably damaging	Het
Arap1	C	A	7: 101,022,222 (GRCm39)	A8E	probably damaging	Het
Arid1a	A	T	4: 133,480,401 (GRCm39)	H174Q	possibly damaging	Het
Btbd2	A	G	10: 80,480,539 (GRCm39)	I358T	probably benign	Het
Camkk2	G	A	5: 122,875,575 (GRCm39)	R492*	probably null	Het
Capn3	T	C	2: 120,294,421 (GRCm39)	V23A	probably benign	Het
Ccdc113	T	A	8: 96,267,459 (GRCm39)	N141K	probably benign	Het
Ccdc60	C	A	5: 116,284,243 (GRCm39)	M298I	probably benign	Het
Celsr3	C	T	9: 108,723,016 (GRCm39)	P2801L	probably benign	Het
Clec4n	T	A	6: 123,207,505 (GRCm39)	V23E	probably damaging	Het
Cmtr2	T	G	8: 110,948,382 (GRCm39)	L231V	probably damaging	Het
Csrnp3	T	G	2: 65,853,363 (GRCm39)	V585G	probably null	Het
Ctnnd2	T	C	15: 30,647,257 (GRCm39)	S318P	probably damaging	Het
Cubn	A	T	2: 13,344,828 (GRCm39)		probably null	Het
Dgkd	C	A	1: 87,857,549 (GRCm39)	P754T	possibly damaging	Het
Dnah7a	A	G	1: 53,724,142 (GRCm39)	S108P	probably benign	Het
Dnajc24	A	G	2: 105,832,268 (GRCm39)		probably benign	Het
Dner	A	T	1: 84,423,177 (GRCm39)	S475R	probably damaging	Het
Dtnb	T	C	12: 3,831,190 (GRCm39)	L630P	probably benign	Het
Dysf	T	C	6: 84,050,885 (GRCm39)	F411L	probably benign	Het
Fbh1	G	A	2: 11,762,339 (GRCm39)	A566V	probably damaging	Het
Fbxw19	G	T	9: 109,315,004 (GRCm39)	T186K	probably benign	Het
Flacc1	A	T	1: 58,698,437 (GRCm39)	V327D	possibly damaging	Het
Gm4825	A	G	15: 85,395,245 (GRCm39)		noncoding transcript	Het
Grhl2	T	A	15: 37,336,558 (GRCm39)	V54D	probably damaging	Het
Hmcn1	T	C	1: 150,551,742 (GRCm39)	I2621V	probably benign	Het
Hmcn1	T	A	1: 150,553,127 (GRCm39)	E2521V	possibly damaging	Het
Kcng1	A	G	2: 168,104,904 (GRCm39)	V314A	probably benign	Het
Kif13a	G	A	13: 47,018,314 (GRCm39)		probably benign	Het
Kif21a	G	A	15: 90,855,051 (GRCm39)	A703V	probably damaging	Het
Kifc1	A	G	17: 34,103,561 (GRCm39)		probably null	Het
Klk13	T	A	7: 43,370,431 (GRCm39)	N31K	possibly damaging	Het
Klri1	T	A	6: 129,674,347 (GRCm39)	H221L	probably benign	Het
Ltbp4	G	A	7: 27,028,443 (GRCm39)	P273L	unknown	Het
Med16	T	C	10: 79,742,929 (GRCm39)	H14R	possibly damaging	Het
Mpeg1	G	A	19: 12,440,275 (GRCm39)	V578M	probably damaging	Het
Mrgpra2a	T	A	7: 47,076,983 (GRCm39)	I92F	probably benign	Het
Muc5b	T	C	7: 141,416,374 (GRCm39)	C3107R	possibly damaging	Het
Myo5a	T	A	9: 75,055,139 (GRCm39)	F441I	probably damaging	Het
Ndst4	T	A	3: 125,232,331 (GRCm39)	L300*	probably null	Het
Nlgn2	G	T	11: 69,718,136 (GRCm39)	D356E	probably damaging	Het
Nlrp2	T	C	7: 5,330,737 (GRCm39)	E553G	probably damaging	Het
Oas1f	G	A	5: 120,994,502 (GRCm39)	C341Y	possibly damaging	Het
Olfm5	A	T	7: 103,809,619 (GRCm39)	C111S	possibly damaging	Het
Oplah	G	A	15: 76,181,664 (GRCm39)	T1119I	probably damaging	Het
Or2ag15	T	C	7: 106,340,601 (GRCm39)	E180G	probably damaging	Het
Or5d46	T	C	2: 88,170,545 (GRCm39)	L212P	probably damaging	Het
Or6c74	C	T	10: 129,870,187 (GRCm39)	Q231*	probably null	Het
Or6f2	A	T	7: 139,756,596 (GRCm39)	I188L	probably benign	Het
Or8b12c	A	G	9: 37,715,242 (GRCm39)	I12V	probably benign	Het
Or8g51	T	A	9: 38,609,500 (GRCm39)	H58L	probably benign	Het
Pde10a	T	C	17: 9,161,750 (GRCm39)	I477T	possibly damaging	Het
Pde4b	A	G	4: 102,454,657 (GRCm39)	E108G	probably damaging	Het
Pdgfrb	A	T	18: 61,198,855 (GRCm39)	T338S	probably benign	Het
Pgghg	A	G	7: 140,523,260 (GRCm39)	M180V	probably benign	Het
Phactr4	G	A	4: 132,104,559 (GRCm39)	T256I	probably benign	Het
Pot1b	A	T	17: 55,969,531 (GRCm39)	Y546N	probably damaging	Het
Rangap1	T	C	15: 81,590,704 (GRCm39)	T463A	probably benign	Het
Rap1gds1	T	C	3: 138,756,317 (GRCm39)	I13V	probably null	Het
Rbak	A	T	5: 143,160,437 (GRCm39)	Y205*	probably null	Het
Reg3b	A	T	6: 78,348,797 (GRCm39)	K31M	probably damaging	Het
Rfpl4	A	T	7: 5,118,533 (GRCm39)	Y12*	probably null	Het
Rnase6	A	G	14: 51,367,889 (GRCm39)	N94D	possibly damaging	Het
Rtn4	T	C	11: 29,686,464 (GRCm39)	L273P	probably damaging	Het
Ryr3	A	C	2: 112,624,812 (GRCm39)	F2203V	probably damaging	Het
Sae1	A	T	7: 16,102,490 (GRCm39)	D161E	possibly damaging	Het
Sema5a	T	C	15: 32,562,877 (GRCm39)	F296S	possibly damaging	Het
Sh3rf1	C	A	8: 61,837,897 (GRCm39)	P814Q	probably damaging	Het
Slc22a29	C	A	19: 8,146,557 (GRCm39)	R415M	probably benign	Het
Slc25a25	C	T	2: 32,310,663 (GRCm39)		probably null	Het
Slco4c1	T	A	1: 96,795,654 (GRCm39)	M135L	probably benign	Het
Slfn1	A	G	11: 83,012,579 (GRCm39)	I232V	possibly damaging	Het
Slitrk1	T	A	14: 109,149,622 (GRCm39)	N363I	probably damaging	Het
Srr	A	G	11: 74,799,542 (GRCm39)	V311A	probably damaging	Het
Tasor	T	C	14: 27,160,621 (GRCm39)	S128P	probably damaging	Het
Tasor	C	T	14: 27,201,746 (GRCm39)	H1419Y	possibly damaging	Het
Tenm1	T	C	X: 41,916,078 (GRCm39)	D402G	probably benign	Het
Topors	T	C	4: 40,261,044 (GRCm39)	R747G	unknown	Het
Trank1	A	T	9: 111,220,696 (GRCm39)	I2478F	probably damaging	Het
Trim69	A	G	2: 121,998,165 (GRCm39)	N46D	probably benign	Het
Trpm1	T	A	7: 63,879,978 (GRCm39)	L661Q	probably damaging	Het
Ttbk1	A	C	17: 46,791,150 (GRCm39)	F45V	probably damaging	Het
Ttn	T	C	2: 76,644,649 (GRCm39)	K4708R	probably damaging	Het
Unkl	A	G	17: 25,428,619 (GRCm39)		probably benign	Het
Uros	A	T	7: 133,288,735 (GRCm39)	N257K	probably benign	Het
Usp25	A	G	16: 76,873,259 (GRCm39)	Y439C	probably damaging	Het
Vgf	A	G	5: 137,061,029 (GRCm39)		probably benign	Het
Vmn2r8	A	T	5: 108,947,152 (GRCm39)	D533E	probably damaging	Het
Vps13a	A	T	19: 16,702,995 (GRCm39)	Y653N	probably damaging	Het
Zfp358	T	C	8: 3,545,742 (GRCm39)	V135A	possibly damaging	Het

Other mutations in Carm1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00981:Carm1	APN	9	21,498,490 (GRCm39)	missense	possibly damaging	0.62
IGL01360:Carm1	APN	9	21,498,598 (GRCm39)	missense	probably benign	0.19
IGL01401:Carm1	APN	9	21,480,878 (GRCm39)	critical splice donor site	probably null
IGL02218:Carm1	APN	9	21,480,808 (GRCm39)	missense	probably damaging	1.00
IGL02436:Carm1	APN	9	21,490,758 (GRCm39)	missense	probably damaging	1.00
IGL02601:Carm1	APN	9	21,498,204 (GRCm39)	missense	probably damaging	1.00
R0551:Carm1	UTSW	9	21,491,787 (GRCm39)	splice site	probably null
R0580:Carm1	UTSW	9	21,494,880 (GRCm39)	missense	probably damaging	1.00
R0724:Carm1	UTSW	9	21,498,670 (GRCm39)	missense	probably damaging	1.00
R0883:Carm1	UTSW	9	21,480,887 (GRCm39)	splice site	probably benign
R1390:Carm1	UTSW	9	21,490,789 (GRCm39)	missense	probably damaging	1.00
R1713:Carm1	UTSW	9	21,497,785 (GRCm39)	missense	probably damaging	0.97
R1950:Carm1	UTSW	9	21,485,812 (GRCm39)	missense	probably benign	0.01
R2402:Carm1	UTSW	9	21,494,836 (GRCm39)	missense	probably damaging	1.00
R2512:Carm1	UTSW	9	21,486,708 (GRCm39)	critical splice acceptor site	probably null
R2520:Carm1	UTSW	9	21,494,893 (GRCm39)	splice site	probably null
R2939:Carm1	UTSW	9	21,490,692 (GRCm39)	splice site	probably null
R2940:Carm1	UTSW	9	21,490,692 (GRCm39)	splice site	probably null
R3081:Carm1	UTSW	9	21,490,692 (GRCm39)	splice site	probably null
R3407:Carm1	UTSW	9	21,497,478 (GRCm39)	missense	probably damaging	1.00
R3434:Carm1	UTSW	9	21,480,769 (GRCm39)	missense	probably damaging	1.00
R3808:Carm1	UTSW	9	21,498,258 (GRCm39)	missense	probably damaging	1.00
R4504:Carm1	UTSW	9	21,480,822 (GRCm39)	missense	probably damaging	1.00
R4700:Carm1	UTSW	9	21,498,480 (GRCm39)	missense	probably benign	0.12
R5019:Carm1	UTSW	9	21,490,807 (GRCm39)	critical splice donor site	probably null
R5362:Carm1	UTSW	9	21,498,655 (GRCm39)	missense	probably benign	0.03
R5661:Carm1	UTSW	9	21,498,295 (GRCm39)	missense	probably benign	0.10
R5730:Carm1	UTSW	9	21,491,636 (GRCm39)	missense	probably benign	0.37
R5913:Carm1	UTSW	9	21,498,848 (GRCm39)	missense	probably benign	0.01
R5928:Carm1	UTSW	9	21,486,598 (GRCm39)	intron	probably benign
R6370:Carm1	UTSW	9	21,498,815 (GRCm39)	missense	probably benign	0.11
R6431:Carm1	UTSW	9	21,494,373 (GRCm39)	missense	probably damaging	1.00
R6555:Carm1	UTSW	9	21,498,258 (GRCm39)	missense	probably damaging	1.00
R7177:Carm1	UTSW	9	21,458,323 (GRCm39)	missense	unknown
R7235:Carm1	UTSW	9	21,498,701 (GRCm39)	critical splice donor site	probably benign
R7249:Carm1	UTSW	9	21,497,505 (GRCm39)	missense	probably benign
R7576:Carm1	UTSW	9	21,497,832 (GRCm39)	critical splice donor site	probably null
R7650:Carm1	UTSW	9	21,491,668 (GRCm39)	missense	probably benign	0.00
R7664:Carm1	UTSW	9	21,498,286 (GRCm39)	missense	probably benign	0.01
R8359:Carm1	UTSW	9	21,480,765 (GRCm39)	missense	possibly damaging	0.51
R8683:Carm1	UTSW	9	21,497,464 (GRCm39)	missense	possibly damaging	0.72
R8690:Carm1	UTSW	9	21,480,808 (GRCm39)	missense	probably damaging	1.00
R8821:Carm1	UTSW	9	21,491,663 (GRCm39)	missense	probably damaging	1.00
R8831:Carm1	UTSW	9	21,491,663 (GRCm39)	missense	probably damaging	1.00
R8947:Carm1	UTSW	9	21,497,749 (GRCm39)	missense	probably damaging	1.00
R8950:Carm1	UTSW	9	21,490,789 (GRCm39)	missense	probably damaging	1.00
R9242:Carm1	UTSW	9	21,494,350 (GRCm39)	missense	probably damaging	1.00
R9399:Carm1	UTSW	9	21,486,791 (GRCm39)	missense	possibly damaging	0.84

Predicted Primers

PCR Primer
(F):5'- ACAGAGCTTTGGTGCTGTCTC -3'
(R):5'- CTCACCACTAGGCTTCAGGTAC -3'

Sequencing Primer
(F):5'- GTAACATGTCAGCCCCTTGGAC -3'
(R):5'- ACCACTAGGCTTCAGGTACTTTTTGG -3'

Posted On

2015-05-19