Incidental Mutation 'R4222:Vmn1r49'
ID 319398
Institutional Source Beutler Lab
Gene Symbol Vmn1r49
Ensembl Gene ENSMUSG00000095932
Gene Name vomeronasal 1, receptor 49
Synonyms V1rb2, VRi2, V1r5
MMRRC Submission 041042-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.076) question?
Stock # R4222 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 90049068-90050000 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 90049228 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Serine at position 258 (F258S)
Ref Sequence ENSEMBL: ENSMUSP00000154456 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000071865] [ENSMUST00000203791] [ENSMUST00000226368]
AlphaFold Q9WUF1
Predicted Effect probably benign
Transcript: ENSMUST00000071865
AA Change: F258S

PolyPhen 2 Score 0.065 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000071762
Gene: ENSMUSG00000095932
AA Change: F258S

DomainStartEndE-ValueType
transmembrane domain 15 37 N/A INTRINSIC
Pfam:V1R 38 302 5e-165 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000203791
AA Change: F258S

PolyPhen 2 Score 0.065 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000145107
Gene: ENSMUSG00000095932
AA Change: F258S

DomainStartEndE-ValueType
transmembrane domain 15 37 N/A INTRINSIC
Pfam:V1R 38 302 5e-165 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226368
AA Change: F258S

PolyPhen 2 Score 0.065 (Sensitivity: 0.94; Specificity: 0.84)
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.2%
  • 20x: 95.3%
Validation Efficiency 91% (49/54)
MGI Phenotype PHENOTYPE: Mice homozygous for a non-functional knock-in allele display abnormal patterns of axonal projections in the accessory olfactory bulb. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgre4 A G 17: 56,092,121 (GRCm39) Y127C probably damaging Het
Aif1l A T 2: 31,852,251 (GRCm39) S40C probably damaging Het
Alkal1 A G 1: 6,458,839 (GRCm39) K76R probably damaging Het
Atm T C 9: 53,391,969 (GRCm39) S1807G probably benign Het
Bhmt-ps1 T A 4: 26,369,352 (GRCm39) noncoding transcript Het
Brd10 A T 19: 29,696,149 (GRCm39) S1115T probably benign Het
Cyp3a11 A T 5: 145,797,276 (GRCm39) Y368N probably damaging Het
Gar1 A T 3: 129,624,455 (GRCm39) probably benign Het
Gm5265 A T 1: 169,281,370 (GRCm39) noncoding transcript Het
Gm7964 T G 7: 83,406,030 (GRCm39) N281K probably damaging Het
Grin1 T C 2: 25,187,332 (GRCm39) probably benign Het
H1f5 A T 13: 21,964,147 (GRCm39) probably benign Het
Hapln4 T A 8: 70,539,610 (GRCm39) W214R probably damaging Het
Ift56 A G 6: 38,372,010 (GRCm39) Y200C probably damaging Het
Irgq C A 7: 24,233,050 (GRCm39) A297D possibly damaging Het
Kri1 T C 9: 21,192,359 (GRCm39) E145G probably benign Het
Lama3 T C 18: 12,583,460 (GRCm39) C683R probably damaging Het
Mrpl22 T A 11: 58,062,693 (GRCm39) probably benign Het
Myo7a T A 7: 97,722,436 (GRCm39) Q1163L possibly damaging Het
Nipsnap3a T A 4: 52,997,251 (GRCm39) D172E probably benign Het
Nrxn3 G T 12: 89,499,762 (GRCm39) G718* probably null Het
Olfm3 C T 3: 114,883,820 (GRCm39) Q41* probably null Het
Or52z12 A G 7: 103,233,966 (GRCm39) T246A probably damaging Het
Or8u8 G T 2: 86,012,341 (GRCm39) T38K probably damaging Het
Parm1 G A 5: 91,741,726 (GRCm39) M31I probably benign Het
Phc3 A T 3: 30,990,968 (GRCm39) S383R probably damaging Het
Pkn2 A T 3: 142,499,627 (GRCm39) L950* probably null Het
Plec C T 15: 76,061,519 (GRCm39) R2671H probably damaging Het
Ptbp1 T C 10: 79,695,047 (GRCm39) I125T probably benign Het
Ptch1 C T 13: 63,682,143 (GRCm39) R537H probably damaging Het
Ptk7 A T 17: 46,885,389 (GRCm39) M679K probably benign Het
Ptx3 C T 3: 66,132,127 (GRCm39) T216I probably damaging Het
Rrp8 T C 7: 105,383,229 (GRCm39) I346V possibly damaging Het
Rsrc1 A G 3: 66,901,900 (GRCm39) K17E unknown Het
Ryr2 T A 13: 11,752,759 (GRCm39) E1854V possibly damaging Het
Semp2l2a T C 8: 13,888,061 (GRCm39) E10G probably benign Het
Slc25a45 A T 19: 5,930,146 (GRCm39) I39F probably damaging Het
Spag5 G A 11: 78,195,337 (GRCm39) V215I probably damaging Het
Ston1 A G 17: 88,944,199 (GRCm39) Y535C probably damaging Het
Tbc1d14 A T 5: 36,650,452 (GRCm39) S395T probably benign Het
Tlr11 C T 14: 50,599,306 (GRCm39) P431S probably damaging Het
Trerf1 G T 17: 47,625,727 (GRCm39) noncoding transcript Het
Trim43b T A 9: 88,972,692 (GRCm39) Q154L probably benign Het
Vmn1r-ps103 C A 13: 22,626,198 (GRCm39) noncoding transcript Het
Vmn2r14 A G 5: 109,364,149 (GRCm39) M589T probably benign Het
Vmn2r60 A T 7: 41,765,952 (GRCm39) T20S probably benign Het
Zbtb5 A G 4: 44,993,855 (GRCm39) probably null Het
Zfp35 T G 18: 24,136,246 (GRCm39) F197V possibly damaging Het
Other mutations in Vmn1r49
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01293:Vmn1r49 APN 6 90,049,394 (GRCm39) missense probably damaging 0.99
IGL03230:Vmn1r49 APN 6 90,049,650 (GRCm39) missense probably damaging 1.00
IGL03308:Vmn1r49 APN 6 90,049,341 (GRCm39) missense possibly damaging 0.67
R0517:Vmn1r49 UTSW 6 90,049,720 (GRCm39) missense probably damaging 0.98
R0638:Vmn1r49 UTSW 6 90,049,648 (GRCm39) missense possibly damaging 0.95
R1498:Vmn1r49 UTSW 6 90,049,298 (GRCm39) missense probably damaging 1.00
R1649:Vmn1r49 UTSW 6 90,049,623 (GRCm39) missense possibly damaging 0.66
R1668:Vmn1r49 UTSW 6 90,049,764 (GRCm39) missense probably benign 0.07
R1816:Vmn1r49 UTSW 6 90,049,785 (GRCm39) missense possibly damaging 0.93
R2071:Vmn1r49 UTSW 6 90,049,184 (GRCm39) missense probably benign 0.00
R2155:Vmn1r49 UTSW 6 90,049,441 (GRCm39) missense probably damaging 0.99
R2274:Vmn1r49 UTSW 6 90,049,126 (GRCm39) missense probably benign 0.23
R4614:Vmn1r49 UTSW 6 90,049,534 (GRCm39) missense probably benign 0.00
R4797:Vmn1r49 UTSW 6 90,049,612 (GRCm39) missense probably benign 0.13
R4978:Vmn1r49 UTSW 6 90,049,872 (GRCm39) missense probably benign 0.30
R5227:Vmn1r49 UTSW 6 90,049,753 (GRCm39) missense probably benign 0.00
R5959:Vmn1r49 UTSW 6 90,049,786 (GRCm39) missense probably damaging 1.00
R6741:Vmn1r49 UTSW 6 90,049,195 (GRCm39) missense probably benign 0.19
R6744:Vmn1r49 UTSW 6 90,049,184 (GRCm39) missense probably benign 0.00
R7173:Vmn1r49 UTSW 6 90,049,250 (GRCm39) missense possibly damaging 0.96
R7457:Vmn1r49 UTSW 6 90,049,534 (GRCm39) missense probably benign 0.00
R7573:Vmn1r49 UTSW 6 90,049,843 (GRCm39) missense probably benign 0.06
R8360:Vmn1r49 UTSW 6 90,049,991 (GRCm39) missense probably benign 0.06
R8399:Vmn1r49 UTSW 6 90,049,689 (GRCm39) nonsense probably null
R9560:Vmn1r49 UTSW 6 90,049,382 (GRCm39) missense probably benign 0.03
Predicted Primers PCR Primer
(F):5'- GCACTACTGCCAAAATGCTG -3'
(R):5'- ATCAGTCTCATGGCCCTGTC -3'

Sequencing Primer
(F):5'- ATTATCAAACCATTCCGTTCACTG -3'
(R):5'- CCAGTGGGTACATGGTAGCTCTC -3'
Posted On 2015-06-10