Incidental Mutation 'R4243:Phactr3'
ID |
320282 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Phactr3
|
Ensembl Gene |
ENSMUSG00000027525 |
Gene Name |
phosphatase and actin regulator 3 |
Synonyms |
4930415A02Rik, 1500003N10Rik, scapinin |
MMRRC Submission |
041643-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.102)
|
Stock # |
R4243 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
2 |
Chromosomal Location |
177760768-177980285 bp(+) (GRCm39) |
Type of Mutation |
splice site (5 bp from exon) |
DNA Base Change (assembly) |
G to A
at 177924982 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000104545
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000103065]
[ENSMUST00000103066]
[ENSMUST00000108915]
[ENSMUST00000108916]
[ENSMUST00000108917]
|
AlphaFold |
Q8BYK5 |
Predicted Effect |
probably null
Transcript: ENSMUST00000103065
|
SMART Domains |
Protein: ENSMUSP00000099354 Gene: ENSMUSG00000027525
Domain | Start | End | E-Value | Type |
low complexity region
|
35 |
48 |
N/A |
INTRINSIC |
RPEL
|
52 |
77 |
2.08e0 |
SMART |
low complexity region
|
187 |
206 |
N/A |
INTRINSIC |
RPEL
|
360 |
385 |
5.1e-4 |
SMART |
low complexity region
|
387 |
397 |
N/A |
INTRINSIC |
RPEL
|
398 |
423 |
3.24e-6 |
SMART |
RPEL
|
436 |
461 |
9.82e-6 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000103066
|
SMART Domains |
Protein: ENSMUSP00000099355 Gene: ENSMUSG00000027525
Domain | Start | End | E-Value | Type |
low complexity region
|
17 |
33 |
N/A |
INTRINSIC |
low complexity region
|
75 |
88 |
N/A |
INTRINSIC |
RPEL
|
92 |
117 |
2.08e0 |
SMART |
low complexity region
|
227 |
246 |
N/A |
INTRINSIC |
RPEL
|
400 |
425 |
5.1e-4 |
SMART |
low complexity region
|
427 |
437 |
N/A |
INTRINSIC |
RPEL
|
438 |
463 |
3.24e-6 |
SMART |
RPEL
|
476 |
501 |
9.82e-6 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000108915
|
SMART Domains |
Protein: ENSMUSP00000104543 Gene: ENSMUSG00000027525
Domain | Start | End | E-Value | Type |
low complexity region
|
76 |
89 |
N/A |
INTRINSIC |
RPEL
|
93 |
118 |
2.08e0 |
SMART |
low complexity region
|
228 |
247 |
N/A |
INTRINSIC |
RPEL
|
401 |
426 |
5.1e-4 |
SMART |
low complexity region
|
428 |
438 |
N/A |
INTRINSIC |
RPEL
|
439 |
464 |
3.24e-6 |
SMART |
RPEL
|
477 |
502 |
9.82e-6 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000108916
|
SMART Domains |
Protein: ENSMUSP00000104544 Gene: ENSMUSG00000027525
Domain | Start | End | E-Value | Type |
low complexity region
|
71 |
84 |
N/A |
INTRINSIC |
RPEL
|
88 |
113 |
2.08e0 |
SMART |
low complexity region
|
223 |
242 |
N/A |
INTRINSIC |
RPEL
|
396 |
421 |
5.1e-4 |
SMART |
low complexity region
|
423 |
433 |
N/A |
INTRINSIC |
RPEL
|
434 |
459 |
3.24e-6 |
SMART |
RPEL
|
472 |
497 |
9.82e-6 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000108917
|
SMART Domains |
Protein: ENSMUSP00000104545 Gene: ENSMUSG00000027525
Domain | Start | End | E-Value | Type |
low complexity region
|
71 |
84 |
N/A |
INTRINSIC |
RPEL
|
88 |
113 |
2.08e0 |
SMART |
low complexity region
|
223 |
242 |
N/A |
INTRINSIC |
RPEL
|
396 |
421 |
5.1e-4 |
SMART |
low complexity region
|
423 |
433 |
N/A |
INTRINSIC |
RPEL
|
436 |
458 |
2.74e-4 |
SMART |
RPEL
|
471 |
496 |
9.82e-6 |
SMART |
|
Meta Mutation Damage Score |
0.9755 |
Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.8%
- 10x: 97.6%
- 20x: 96.0%
|
Validation Efficiency |
100% (50/50) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the phosphatase and actin regulator protein family. The encoded protein is associated with the nuclear scaffold in proliferating cells, and binds to actin and the catalytic subunit of protein phosphatase-1, suggesting that it functions as a regulatory subunit of protein phosphatase-1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 50 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1500011B03Rik |
C |
A |
5: 114,951,855 (GRCm39) |
R40L |
possibly damaging |
Het |
4930449A18Rik |
T |
A |
3: 59,733,203 (GRCm39) |
|
noncoding transcript |
Het |
4930578I06Rik |
C |
T |
14: 64,210,658 (GRCm39) |
R190H |
probably benign |
Het |
4933409G03Rik |
C |
T |
2: 68,423,887 (GRCm39) |
|
probably benign |
Het |
Actr1b |
T |
C |
1: 36,740,911 (GRCm39) |
Y171C |
possibly damaging |
Het |
Birc2 |
T |
C |
9: 7,834,386 (GRCm39) |
T32A |
probably benign |
Het |
Cdh13 |
T |
A |
8: 119,968,996 (GRCm39) |
V451E |
probably damaging |
Het |
Cdh20 |
C |
T |
1: 104,869,868 (GRCm39) |
T196I |
probably damaging |
Het |
Cdt1 |
A |
G |
8: 123,298,157 (GRCm39) |
M383V |
probably benign |
Het |
Chrna9 |
T |
C |
5: 66,092,379 (GRCm39) |
|
probably null |
Het |
Cpne9 |
C |
T |
6: 113,259,984 (GRCm39) |
|
probably benign |
Het |
Cspg4 |
T |
C |
9: 56,795,141 (GRCm39) |
S959P |
probably benign |
Het |
Ctbp2 |
A |
G |
7: 132,600,583 (GRCm39) |
I647T |
probably benign |
Het |
Cyld |
A |
T |
8: 89,457,383 (GRCm39) |
R536* |
probably null |
Het |
Ddx1 |
A |
T |
12: 13,290,910 (GRCm39) |
C68* |
probably null |
Het |
Dock10 |
T |
A |
1: 80,544,472 (GRCm39) |
E905V |
probably benign |
Het |
Dynlt1b |
T |
C |
17: 6,697,639 (GRCm39) |
|
probably null |
Het |
Faxc |
G |
A |
4: 21,982,491 (GRCm39) |
R310Q |
probably benign |
Het |
Fhdc1 |
C |
A |
3: 84,352,133 (GRCm39) |
V1031F |
probably benign |
Het |
Frmd5 |
C |
A |
2: 121,393,363 (GRCm39) |
|
probably null |
Het |
Gm5174 |
C |
A |
10: 86,492,144 (GRCm39) |
|
noncoding transcript |
Het |
Hspa12b |
C |
T |
2: 130,983,778 (GRCm39) |
H293Y |
possibly damaging |
Het |
Jakmip2 |
A |
G |
18: 43,710,501 (GRCm39) |
V234A |
probably benign |
Het |
Jkamp |
G |
A |
12: 72,140,799 (GRCm39) |
V108I |
probably benign |
Het |
Mettl23 |
T |
C |
11: 116,739,126 (GRCm39) |
V72A |
possibly damaging |
Het |
Morc2b |
T |
A |
17: 33,355,375 (GRCm39) |
Y799F |
probably benign |
Het |
Mtmr11 |
T |
A |
3: 96,075,393 (GRCm39) |
C358S |
probably damaging |
Het |
Myo18b |
G |
A |
5: 112,840,261 (GRCm39) |
H2511Y |
possibly damaging |
Het |
Mysm1 |
A |
G |
4: 94,857,248 (GRCm39) |
V120A |
probably benign |
Het |
Nhlrc1 |
C |
T |
13: 47,167,502 (GRCm39) |
V252I |
probably benign |
Het |
Or12j3 |
G |
A |
7: 139,952,857 (GRCm39) |
A222V |
probably benign |
Het |
Or2ak6 |
T |
G |
11: 58,593,277 (GRCm39) |
L250R |
probably damaging |
Het |
Or7g35 |
C |
A |
9: 19,495,854 (GRCm39) |
T7K |
probably damaging |
Het |
Pard3 |
G |
A |
8: 128,098,128 (GRCm39) |
A390T |
probably benign |
Het |
Pcdhga1 |
T |
A |
18: 37,796,605 (GRCm39) |
D536E |
probably damaging |
Het |
Pkn2 |
T |
C |
3: 142,526,339 (GRCm39) |
N413D |
possibly damaging |
Het |
Ppp1r12b |
T |
G |
1: 134,709,846 (GRCm39) |
|
probably benign |
Het |
Ptprf |
A |
G |
4: 118,083,649 (GRCm39) |
|
probably null |
Het |
Rab3gap1 |
T |
C |
1: 127,865,304 (GRCm39) |
|
probably null |
Het |
Rasa1 |
A |
G |
13: 85,392,314 (GRCm39) |
Y407H |
probably damaging |
Het |
Rfx7 |
A |
G |
9: 72,499,051 (GRCm39) |
T72A |
possibly damaging |
Het |
Slc27a1 |
A |
G |
8: 72,037,617 (GRCm39) |
T535A |
probably benign |
Het |
Stra6 |
G |
A |
9: 58,050,309 (GRCm39) |
A237T |
probably benign |
Het |
Tor1aip2 |
A |
G |
1: 155,941,182 (GRCm39) |
E496G |
probably damaging |
Het |
Usp47 |
A |
G |
7: 111,707,836 (GRCm39) |
D1294G |
probably damaging |
Het |
Utp20 |
A |
G |
10: 88,643,187 (GRCm39) |
|
probably null |
Het |
Vmn1r79 |
T |
A |
7: 11,910,971 (GRCm39) |
C284* |
probably null |
Het |
Zar1 |
T |
C |
5: 72,737,736 (GRCm39) |
E121G |
possibly damaging |
Het |
Zbtb40 |
C |
T |
4: 136,745,860 (GRCm39) |
A58T |
probably benign |
Het |
Zfhx3 |
A |
G |
8: 109,518,952 (GRCm39) |
T25A |
probably damaging |
Het |
|
Other mutations in Phactr3 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01419:Phactr3
|
APN |
2 |
177,920,855 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01432:Phactr3
|
APN |
2 |
177,924,893 (GRCm39) |
missense |
probably benign |
0.05 |
IGL01580:Phactr3
|
APN |
2 |
177,911,297 (GRCm39) |
splice site |
probably benign |
|
IGL02688:Phactr3
|
APN |
2 |
177,920,792 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL02985:Phactr3
|
APN |
2 |
177,817,250 (GRCm39) |
missense |
probably benign |
|
PIT4151001:Phactr3
|
UTSW |
2 |
177,975,861 (GRCm39) |
missense |
probably damaging |
1.00 |
R1854:Phactr3
|
UTSW |
2 |
177,924,940 (GRCm39) |
missense |
probably damaging |
1.00 |
R2132:Phactr3
|
UTSW |
2 |
177,925,759 (GRCm39) |
missense |
probably benign |
0.14 |
R3110:Phactr3
|
UTSW |
2 |
177,920,810 (GRCm39) |
missense |
possibly damaging |
0.85 |
R3112:Phactr3
|
UTSW |
2 |
177,920,810 (GRCm39) |
missense |
possibly damaging |
0.85 |
R3122:Phactr3
|
UTSW |
2 |
177,973,411 (GRCm39) |
missense |
probably damaging |
1.00 |
R4193:Phactr3
|
UTSW |
2 |
177,924,945 (GRCm39) |
missense |
probably damaging |
0.98 |
R4194:Phactr3
|
UTSW |
2 |
177,924,902 (GRCm39) |
missense |
possibly damaging |
0.80 |
R4245:Phactr3
|
UTSW |
2 |
177,924,982 (GRCm39) |
splice site |
probably null |
|
R4397:Phactr3
|
UTSW |
2 |
177,817,199 (GRCm39) |
intron |
probably benign |
|
R4433:Phactr3
|
UTSW |
2 |
177,924,925 (GRCm39) |
missense |
probably damaging |
1.00 |
R4581:Phactr3
|
UTSW |
2 |
177,924,965 (GRCm39) |
missense |
probably damaging |
1.00 |
R4772:Phactr3
|
UTSW |
2 |
177,925,729 (GRCm39) |
missense |
probably damaging |
1.00 |
R4830:Phactr3
|
UTSW |
2 |
177,925,811 (GRCm39) |
missense |
probably damaging |
0.98 |
R5045:Phactr3
|
UTSW |
2 |
177,973,412 (GRCm39) |
missense |
probably damaging |
1.00 |
R5442:Phactr3
|
UTSW |
2 |
177,784,254 (GRCm39) |
missense |
probably benign |
0.38 |
R5461:Phactr3
|
UTSW |
2 |
177,920,694 (GRCm39) |
missense |
probably benign |
|
R5816:Phactr3
|
UTSW |
2 |
177,944,586 (GRCm39) |
missense |
probably damaging |
1.00 |
R6276:Phactr3
|
UTSW |
2 |
177,920,812 (GRCm39) |
missense |
probably damaging |
0.99 |
R6668:Phactr3
|
UTSW |
2 |
177,974,657 (GRCm39) |
missense |
probably damaging |
1.00 |
R7144:Phactr3
|
UTSW |
2 |
177,944,529 (GRCm39) |
missense |
probably damaging |
1.00 |
R7340:Phactr3
|
UTSW |
2 |
177,975,854 (GRCm39) |
missense |
probably damaging |
1.00 |
R7798:Phactr3
|
UTSW |
2 |
177,925,703 (GRCm39) |
missense |
probably benign |
0.19 |
R8009:Phactr3
|
UTSW |
2 |
177,974,737 (GRCm39) |
missense |
probably damaging |
1.00 |
R8074:Phactr3
|
UTSW |
2 |
177,944,589 (GRCm39) |
missense |
probably damaging |
1.00 |
R8348:Phactr3
|
UTSW |
2 |
177,897,935 (GRCm39) |
missense |
probably benign |
0.03 |
R8530:Phactr3
|
UTSW |
2 |
177,925,819 (GRCm39) |
missense |
probably damaging |
1.00 |
R9077:Phactr3
|
UTSW |
2 |
177,974,758 (GRCm39) |
splice site |
probably benign |
|
R9153:Phactr3
|
UTSW |
2 |
177,925,739 (GRCm39) |
missense |
possibly damaging |
0.79 |
R9406:Phactr3
|
UTSW |
2 |
177,925,856 (GRCm39) |
missense |
probably damaging |
0.99 |
R9676:Phactr3
|
UTSW |
2 |
177,925,837 (GRCm39) |
nonsense |
probably null |
|
R9721:Phactr3
|
UTSW |
2 |
177,898,043 (GRCm39) |
missense |
probably damaging |
1.00 |
R9722:Phactr3
|
UTSW |
2 |
177,898,043 (GRCm39) |
missense |
probably damaging |
1.00 |
R9776:Phactr3
|
UTSW |
2 |
177,975,896 (GRCm39) |
missense |
probably damaging |
1.00 |
R9778:Phactr3
|
UTSW |
2 |
177,924,805 (GRCm39) |
missense |
possibly damaging |
0.73 |
Z1176:Phactr3
|
UTSW |
2 |
177,911,167 (GRCm39) |
missense |
probably damaging |
0.96 |
|
Predicted Primers |
PCR Primer
(F):5'- ACAAGCTGCGCTCTTCCAAG -3'
(R):5'- GATCGTGGGGATTTCAGAATCG -3'
Sequencing Primer
(F):5'- TCTTCCAAGGCCCCAGCATG -3'
(R):5'- TCGTGGGGATTTCAGAATCGTAAAC -3'
|
Posted On |
2015-06-12 |