Incidental Mutation 'R4245:C8a'
| ID |
320376 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
C8a
|
| Ensembl Gene |
ENSMUSG00000035031 |
| Gene Name |
complement component 8, alpha polypeptide |
| Synonyms |
|
| MMRRC Submission |
041061-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R4245 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
4 |
| Chromosomal Location |
104672876-104733595 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 104733543 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 4
(V4A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000067541
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000048947]
[ENSMUST00000064873]
[ENSMUST00000106808]
|
| AlphaFold |
Q8K182 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000048947
AA Change: V4A
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000047606
Gene: ENSMUSG00000035031
AA Change: V4A
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
20 |
N/A |
INTRINSIC |
|
TSP1
|
41 |
91 |
1.33e-1 |
SMART |
|
LDLa
|
95 |
132 |
2.07e-11 |
SMART |
|
MACPF
|
288 |
492 |
5.26e-58 |
SMART |
|
Blast:EGF
|
496 |
529 |
3e-13 |
BLAST |
|
Blast:TSP1
|
545 |
573 |
3e-12 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000064873
AA Change: V4A
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000067541
Gene: ENSMUSG00000035031
AA Change: V4A
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
20 |
N/A |
INTRINSIC |
|
TSP1
|
41 |
91 |
1.33e-1 |
SMART |
|
LDLa
|
95 |
132 |
2.07e-11 |
SMART |
|
MACPF
|
288 |
492 |
5.26e-58 |
SMART |
|
Blast:EGF
|
496 |
529 |
4e-13 |
BLAST |
|
TSP1
|
545 |
587 |
1.86e-1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000106808
|
| SMART Domains |
Protein: ENSMUSP00000102420
Gene: ENSMUSG00000035031
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:TSP1
|
4 |
47 |
3e-15 |
BLAST |
|
LDLa
|
51 |
88 |
2.07e-11 |
SMART |
|
MACPF
|
244 |
448 |
5.26e-58 |
SMART |
|
Blast:EGF
|
452 |
485 |
4e-13 |
BLAST |
|
Blast:TSP1
|
501 |
543 |
3e-22 |
BLAST |
|
| Meta Mutation Damage Score |
0.0646 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.7%
- 10x: 97.4%
- 20x: 95.5%
|
| Validation Efficiency |
98% (47/48) |
| MGI Phenotype |
FUNCTION: This gene encodes the alpha subunit of complement component C8 that participates in the assembly of the complement membrane attack complex. The encoded preproprotein undergoes proteolytic processing to generate the alpha subunit, which associates with the beta and gamma subunits to form a trimeric complement component, C8. Alternative splicing results in multiple transcript variants encoding different isoforms that may undergo similar proteolytic processing. This gene is located adjacent to the gene encoding the beta subunit. [provided by RefSeq, Oct 2015]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 41 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4930449A18Rik |
T |
A |
3: 59,733,203 (GRCm39) |
|
noncoding transcript |
Het |
| Acacb |
A |
T |
5: 114,368,845 (GRCm39) |
T1688S |
probably damaging |
Het |
| Actr1b |
T |
C |
1: 36,740,911 (GRCm39) |
Y171C |
possibly damaging |
Het |
| Ccdc171 |
A |
G |
4: 83,473,045 (GRCm39) |
D158G |
probably damaging |
Het |
| Ccdc184 |
T |
A |
15: 98,066,750 (GRCm39) |
|
probably null |
Het |
| Cdc23 |
T |
C |
18: 34,770,100 (GRCm39) |
|
probably benign |
Het |
| Dnah5 |
A |
G |
15: 28,219,335 (GRCm39) |
N51S |
probably benign |
Het |
| Dock10 |
T |
A |
1: 80,544,472 (GRCm39) |
E905V |
probably benign |
Het |
| Eepd1 |
T |
C |
9: 25,505,920 (GRCm39) |
I460T |
probably benign |
Het |
| Fen1 |
T |
A |
19: 10,177,731 (GRCm39) |
I238F |
probably damaging |
Het |
| Fhdc1 |
C |
A |
3: 84,352,133 (GRCm39) |
V1031F |
probably benign |
Het |
| Gm5493 |
A |
G |
17: 22,966,199 (GRCm39) |
E28G |
probably benign |
Het |
| Jakmip2 |
A |
G |
18: 43,710,501 (GRCm39) |
V234A |
probably benign |
Het |
| Map3k6 |
T |
C |
4: 132,979,258 (GRCm39) |
Y1204H |
possibly damaging |
Het |
| Mpeg1 |
C |
A |
19: 12,440,272 (GRCm39) |
Q577K |
probably damaging |
Het |
| Mthfd1 |
T |
C |
12: 76,348,047 (GRCm39) |
S564P |
probably damaging |
Het |
| Mtmr11 |
T |
A |
3: 96,075,393 (GRCm39) |
C358S |
probably damaging |
Het |
| Muc4 |
T |
C |
16: 32,753,802 (GRCm38) |
I1226T |
probably benign |
Het |
| Myo18b |
G |
A |
5: 112,840,261 (GRCm39) |
H2511Y |
possibly damaging |
Het |
| Ndufs6 |
A |
T |
13: 73,468,512 (GRCm39) |
D62E |
probably damaging |
Het |
| Or5af2 |
T |
C |
11: 58,708,604 (GRCm39) |
Y257H |
probably damaging |
Het |
| Or7e178 |
T |
C |
9: 20,225,629 (GRCm39) |
I196V |
possibly damaging |
Het |
| Pcdhga1 |
T |
A |
18: 37,796,605 (GRCm39) |
D536E |
probably damaging |
Het |
| Phactr3 |
G |
A |
2: 177,924,982 (GRCm39) |
|
probably null |
Het |
| Ptgir |
A |
G |
7: 16,640,794 (GRCm39) |
M29V |
possibly damaging |
Het |
| Ptk2 |
C |
T |
15: 73,103,825 (GRCm39) |
G749D |
probably benign |
Het |
| Rab3il1 |
A |
T |
19: 10,007,518 (GRCm39) |
D222V |
probably damaging |
Het |
| Radil |
T |
C |
5: 142,529,546 (GRCm39) |
D50G |
probably damaging |
Het |
| Rfx7 |
A |
G |
9: 72,499,051 (GRCm39) |
T72A |
possibly damaging |
Het |
| Scn7a |
T |
C |
2: 66,572,345 (GRCm39) |
I209V |
probably benign |
Het |
| Sf3a1 |
C |
T |
11: 4,117,774 (GRCm39) |
R179C |
probably damaging |
Het |
| Spata31e2 |
T |
C |
1: 26,721,161 (GRCm39) |
N1340D |
probably benign |
Het |
| Styxl2 |
T |
C |
1: 165,928,685 (GRCm39) |
E309G |
probably damaging |
Het |
| Tg |
T |
C |
15: 66,568,318 (GRCm39) |
V1335A |
possibly damaging |
Het |
| Thnsl1 |
A |
G |
2: 21,217,059 (GRCm39) |
E271G |
probably benign |
Het |
| Vill |
T |
A |
9: 118,900,359 (GRCm39) |
|
probably benign |
Het |
| Vmn2r79 |
A |
G |
7: 86,651,624 (GRCm39) |
D341G |
possibly damaging |
Het |
| Wdr59 |
T |
C |
8: 112,216,996 (GRCm39) |
N272D |
possibly damaging |
Het |
| Zar1 |
T |
C |
5: 72,737,736 (GRCm39) |
E121G |
possibly damaging |
Het |
| Zfp985 |
A |
G |
4: 147,667,396 (GRCm39) |
K88R |
probably damaging |
Het |
| Zscan29 |
C |
T |
2: 120,995,275 (GRCm39) |
|
probably null |
Het |
|
| Other mutations in C8a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00561:C8a
|
APN |
4 |
104,722,642 (GRCm39) |
intron |
probably benign |
|
|
IGL01326:C8a
|
APN |
4 |
104,713,617 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01339:C8a
|
APN |
4 |
104,685,182 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01809:C8a
|
APN |
4 |
104,703,139 (GRCm39) |
missense |
probably benign |
0.06 |
|
IGL01843:C8a
|
APN |
4 |
104,719,808 (GRCm39) |
nonsense |
probably null |
|
|
IGL01988:C8a
|
APN |
4 |
104,683,891 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02187:C8a
|
APN |
4 |
104,719,933 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02430:C8a
|
APN |
4 |
104,674,719 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL02537:C8a
|
APN |
4 |
104,703,148 (GRCm39) |
missense |
probably damaging |
1.00 |
|
derogation
|
UTSW |
4 |
104,685,275 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
insult
|
UTSW |
4 |
104,685,236 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0045:C8a
|
UTSW |
4 |
104,684,012 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0045:C8a
|
UTSW |
4 |
104,684,012 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0367:C8a
|
UTSW |
4 |
104,719,791 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0632:C8a
|
UTSW |
4 |
104,713,689 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1013:C8a
|
UTSW |
4 |
104,685,236 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1442:C8a
|
UTSW |
4 |
104,685,275 (GRCm39) |
missense |
possibly damaging |
0.50 |
|
R1902:C8a
|
UTSW |
4 |
104,713,798 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R2969:C8a
|
UTSW |
4 |
104,710,974 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R3735:C8a
|
UTSW |
4 |
104,674,812 (GRCm39) |
missense |
probably benign |
0.43 |
|
R3736:C8a
|
UTSW |
4 |
104,674,812 (GRCm39) |
missense |
probably benign |
0.43 |
|
R4707:C8a
|
UTSW |
4 |
104,713,618 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4812:C8a
|
UTSW |
4 |
104,719,788 (GRCm39) |
splice site |
probably null |
|
|
R5221:C8a
|
UTSW |
4 |
104,703,122 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5279:C8a
|
UTSW |
4 |
104,703,185 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5461:C8a
|
UTSW |
4 |
104,673,042 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5881:C8a
|
UTSW |
4 |
104,711,129 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6039:C8a
|
UTSW |
4 |
104,703,139 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6039:C8a
|
UTSW |
4 |
104,703,139 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6191:C8a
|
UTSW |
4 |
104,703,100 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6626:C8a
|
UTSW |
4 |
104,703,164 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7438:C8a
|
UTSW |
4 |
104,718,626 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R7471:C8a
|
UTSW |
4 |
104,674,822 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7514:C8a
|
UTSW |
4 |
104,703,247 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R7596:C8a
|
UTSW |
4 |
104,711,064 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R8947:C8a
|
UTSW |
4 |
104,679,326 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9039:C8a
|
UTSW |
4 |
104,679,200 (GRCm39) |
missense |
probably benign |
|
|
R9248:C8a
|
UTSW |
4 |
104,703,199 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0012:C8a
|
UTSW |
4 |
104,683,979 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0019:C8a
|
UTSW |
4 |
104,674,783 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:C8a
|
UTSW |
4 |
104,719,883 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TCCTCCGCTGGATTAGTAACAATATG -3'
(R):5'- CTTGGGGCCATTTTGAAGGC -3'
Sequencing Primer
(F):5'- TGTAAGGATCCAAAGCCC -3'
(R):5'- GGCGTTTGGCTAATCAATACC -3'
|
| Posted On |
2015-06-12 |
Incidental Mutation