Incidental Mutation 'R4247:Gtf3c5'
ID |
320450 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Gtf3c5
|
Ensembl Gene |
ENSMUSG00000026816 |
Gene Name |
general transcription factor IIIC, polypeptide 5 |
Synonyms |
TFIIICepsilon, TFiiiC2-63, TFIIIC63, 2700084A09Rik |
MMRRC Submission |
041063-MU
|
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
R4247 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
2 |
Chromosomal Location |
28456257-28473291 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 28461196 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Aspartic acid to Glycine
at position 306
(D306G)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000109521
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000028157]
[ENSMUST00000113889]
|
AlphaFold |
Q8R2T8 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000028157
AA Change: D306G
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000028157 Gene: ENSMUSG00000026816 AA Change: D306G
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
13 |
N/A |
INTRINSIC |
Pfam:Tau95
|
23 |
322 |
2.8e-71 |
PFAM |
coiled coil region
|
471 |
494 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000113889
AA Change: D306G
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000109521 Gene: ENSMUSG00000026816 AA Change: D306G
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
13 |
N/A |
INTRINSIC |
Pfam:Tau95
|
24 |
322 |
1.7e-85 |
PFAM |
coiled coil region
|
477 |
500 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131370
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139580
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000142054
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000177012
|
Meta Mutation Damage Score |
0.9514 |
Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.5%
- 20x: 95.9%
|
Validation Efficiency |
98% (41/42) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 39 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adam22 |
T |
C |
5: 8,195,626 (GRCm39) |
I305V |
probably benign |
Het |
Aga |
T |
A |
8: 53,964,865 (GRCm39) |
L9Q |
possibly damaging |
Het |
Akna |
C |
T |
4: 63,313,409 (GRCm39) |
G238D |
probably benign |
Het |
Arhgap23 |
G |
A |
11: 97,354,525 (GRCm39) |
E813K |
probably damaging |
Het |
Atp13a2 |
T |
C |
4: 140,719,539 (GRCm39) |
|
probably null |
Het |
Atp8a1 |
C |
T |
5: 67,824,917 (GRCm39) |
G820S |
probably damaging |
Het |
Ccdc97 |
T |
G |
7: 25,415,459 (GRCm39) |
H68P |
possibly damaging |
Het |
Dclre1b |
A |
C |
3: 103,711,400 (GRCm39) |
|
probably null |
Het |
Erap1 |
T |
C |
13: 74,823,414 (GRCm39) |
I816T |
probably damaging |
Het |
Fubp1 |
G |
A |
3: 151,937,573 (GRCm39) |
A103T |
possibly damaging |
Het |
Gnal |
C |
G |
18: 67,221,654 (GRCm39) |
P19R |
unknown |
Het |
Hecw2 |
C |
T |
1: 53,871,804 (GRCm39) |
V1381M |
probably damaging |
Het |
Hsdl2 |
A |
T |
4: 59,594,417 (GRCm39) |
N16I |
probably damaging |
Het |
Kif14 |
G |
T |
1: 136,401,126 (GRCm39) |
M492I |
possibly damaging |
Het |
Kif27 |
A |
G |
13: 58,435,731 (GRCm39) |
V1354A |
probably damaging |
Het |
Kif9 |
G |
T |
9: 110,325,027 (GRCm39) |
|
probably null |
Het |
Lmtk3 |
G |
A |
7: 45,443,486 (GRCm39) |
C723Y |
possibly damaging |
Het |
Lrrc24 |
A |
G |
15: 76,602,176 (GRCm39) |
I193T |
possibly damaging |
Het |
Or2bd2 |
A |
G |
7: 6,441,901 (GRCm39) |
|
probably benign |
Het |
Or52b1 |
T |
C |
7: 104,979,355 (GRCm39) |
I15V |
probably benign |
Het |
Pkd1l1 |
C |
T |
11: 8,815,543 (GRCm39) |
R1456K |
possibly damaging |
Het |
Pramel52-ps |
A |
G |
5: 94,531,446 (GRCm39) |
D110G |
possibly damaging |
Het |
Ranbp2 |
A |
G |
10: 58,314,686 (GRCm39) |
D1802G |
possibly damaging |
Het |
Resf1 |
T |
A |
6: 149,227,041 (GRCm39) |
M29K |
possibly damaging |
Het |
Satl1 |
A |
G |
X: 111,316,033 (GRCm39) |
S141P |
probably benign |
Het |
Scn11a |
C |
T |
9: 119,636,952 (GRCm39) |
V250M |
probably damaging |
Het |
Slitrk1 |
A |
G |
14: 109,149,994 (GRCm39) |
V239A |
possibly damaging |
Het |
Slitrk6 |
T |
A |
14: 110,988,171 (GRCm39) |
D512V |
probably damaging |
Het |
Snx8 |
A |
G |
5: 140,341,800 (GRCm39) |
L121P |
probably damaging |
Het |
Sumf1 |
A |
C |
6: 108,131,974 (GRCm39) |
V156G |
probably damaging |
Het |
Tamalin |
G |
T |
15: 101,122,418 (GRCm39) |
R79L |
possibly damaging |
Het |
Trp73 |
A |
G |
4: 154,149,089 (GRCm39) |
|
probably null |
Het |
Tsen2 |
A |
G |
6: 115,524,785 (GRCm39) |
|
probably benign |
Het |
Upp1 |
T |
C |
11: 9,084,815 (GRCm39) |
I178T |
probably benign |
Het |
Vmn2r73 |
A |
T |
7: 85,521,883 (GRCm39) |
L152Q |
probably damaging |
Het |
Vmn2r97 |
T |
C |
17: 19,167,542 (GRCm39) |
S599P |
possibly damaging |
Het |
Wrnip1 |
T |
C |
13: 32,990,866 (GRCm39) |
L375P |
probably damaging |
Het |
Zfp945 |
C |
T |
17: 23,069,583 (GRCm39) |
G793D |
probably damaging |
Het |
Zfyve9 |
C |
A |
4: 108,576,389 (GRCm39) |
A231S |
probably benign |
Het |
|
Other mutations in Gtf3c5 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01817:Gtf3c5
|
APN |
2 |
28,459,301 (GRCm39) |
splice site |
probably null |
|
R0062:Gtf3c5
|
UTSW |
2 |
28,462,198 (GRCm39) |
splice site |
probably benign |
|
R0062:Gtf3c5
|
UTSW |
2 |
28,462,198 (GRCm39) |
splice site |
probably benign |
|
R0395:Gtf3c5
|
UTSW |
2 |
28,467,930 (GRCm39) |
missense |
probably damaging |
1.00 |
R0653:Gtf3c5
|
UTSW |
2 |
28,468,008 (GRCm39) |
missense |
probably benign |
0.34 |
R1232:Gtf3c5
|
UTSW |
2 |
28,461,227 (GRCm39) |
missense |
probably damaging |
1.00 |
R1828:Gtf3c5
|
UTSW |
2 |
28,469,694 (GRCm39) |
missense |
probably damaging |
1.00 |
R2174:Gtf3c5
|
UTSW |
2 |
28,457,787 (GRCm39) |
missense |
probably benign |
0.26 |
R3154:Gtf3c5
|
UTSW |
2 |
28,469,548 (GRCm39) |
missense |
probably damaging |
0.96 |
R4612:Gtf3c5
|
UTSW |
2 |
28,469,596 (GRCm39) |
missense |
probably benign |
0.00 |
R4673:Gtf3c5
|
UTSW |
2 |
28,462,236 (GRCm39) |
missense |
probably benign |
0.20 |
R5092:Gtf3c5
|
UTSW |
2 |
28,472,885 (GRCm39) |
missense |
possibly damaging |
0.58 |
R6009:Gtf3c5
|
UTSW |
2 |
28,461,177 (GRCm39) |
missense |
probably benign |
0.00 |
R6334:Gtf3c5
|
UTSW |
2 |
28,460,474 (GRCm39) |
missense |
probably benign |
0.00 |
R6808:Gtf3c5
|
UTSW |
2 |
28,460,499 (GRCm39) |
missense |
probably damaging |
0.98 |
R7490:Gtf3c5
|
UTSW |
2 |
28,461,153 (GRCm39) |
missense |
probably damaging |
1.00 |
R7544:Gtf3c5
|
UTSW |
2 |
28,469,554 (GRCm39) |
missense |
possibly damaging |
0.91 |
R7940:Gtf3c5
|
UTSW |
2 |
28,458,592 (GRCm39) |
missense |
possibly damaging |
0.91 |
R8003:Gtf3c5
|
UTSW |
2 |
28,459,373 (GRCm39) |
missense |
probably benign |
0.03 |
R8176:Gtf3c5
|
UTSW |
2 |
28,460,429 (GRCm39) |
critical splice donor site |
probably null |
|
R8319:Gtf3c5
|
UTSW |
2 |
28,460,506 (GRCm39) |
missense |
probably benign |
0.00 |
R9151:Gtf3c5
|
UTSW |
2 |
28,463,577 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Predicted Primers |
PCR Primer
(F):5'- CACACATGTGCTGATACTCAAC -3'
(R):5'- AGGCACTGTTGGACTCCTTC -3'
Sequencing Primer
(F):5'- GTGCTGATACTCAACACACAGATAC -3'
(R):5'- GGACAGTTGTCACAGAAACTCCTG -3'
|
Posted On |
2015-06-12 |