Mutagenetix > Incidental Mutation

Incidental Mutation 'R4249:Shank1'

320532

Institutional Source

Beutler Lab

Gene Symbol

Shank1

Ensembl Gene

ENSMUSG00000038738

Gene Name

SH3 and multiple ankyrin repeat domains 1

Synonyms

MMRRC Submission

041065-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.351) question?

Stock #

R4249 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

43959677-44009996 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 43969160 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Asparagine at position 352 (H352N)

Ref Sequence

ENSEMBL: ENSMUSP00000103571 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000107934] [ENSMUST00000107935] [ENSMUST00000107938]

AlphaFold

D3YZU1

Predicted Effect

unknown
Transcript: ENSMUST00000107934
AA Change: H352N

SMART Domains

Protein: ENSMUSP00000103567
Gene: ENSMUSG00000038738
AA Change: H352N

Domain	Start	End	E-Value	Type
low complexity region	17	46	N/A	INTRINSIC
ANK	212	242	5.75e-1	SMART
ANK	246	275	3.6e-2	SMART
ANK	279	309	3.44e1	SMART
ANK	313	342	1.97e1	SMART
ANK	346	375	3.97e-4	SMART
ANK	379	407	5.69e2	SMART
low complexity region	452	479	N/A	INTRINSIC
low complexity region	487	504	N/A	INTRINSIC
low complexity region	521	548	N/A	INTRINSIC
SH3	557	612	3.73e-16	SMART
PDZ	663	752	2.12e-13	SMART
Blast:PDZ	795	830	5e-11	BLAST
low complexity region	920	941	N/A	INTRINSIC
low complexity region	955	982	N/A	INTRINSIC
low complexity region	993	1023	N/A	INTRINSIC
low complexity region	1051	1080	N/A	INTRINSIC
low complexity region	1123	1138	N/A	INTRINSIC
low complexity region	1162	1175	N/A	INTRINSIC
low complexity region	1179	1220	N/A	INTRINSIC
low complexity region	1256	1275	N/A	INTRINSIC
low complexity region	1298	1323	N/A	INTRINSIC
low complexity region	1348	1359	N/A	INTRINSIC
low complexity region	1369	1404	N/A	INTRINSIC
low complexity region	1450	1466	N/A	INTRINSIC
low complexity region	1512	1532	N/A	INTRINSIC
low complexity region	1539	1555	N/A	INTRINSIC
low complexity region	1557	1570	N/A	INTRINSIC
low complexity region	1580	1614	N/A	INTRINSIC
low complexity region	1633	1667	N/A	INTRINSIC
low complexity region	1685	1720	N/A	INTRINSIC
low complexity region	1735	1746	N/A	INTRINSIC
low complexity region	1776	1787	N/A	INTRINSIC
low complexity region	1806	1823	N/A	INTRINSIC
low complexity region	1834	1852	N/A	INTRINSIC
low complexity region	1893	1907	N/A	INTRINSIC
low complexity region	1925	1936	N/A	INTRINSIC
low complexity region	1942	1976	N/A	INTRINSIC
low complexity region	1988	2004	N/A	INTRINSIC
low complexity region	2009	2029	N/A	INTRINSIC
low complexity region	2059	2083	N/A	INTRINSIC
SAM	2092	2158	1.35e-14	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000107935
AA Change: H352N

SMART Domains

Protein: ENSMUSP00000103568
Gene: ENSMUSG00000038738
AA Change: H352N

Domain	Start	End	E-Value	Type
low complexity region	17	46	N/A	INTRINSIC
ANK	212	242	5.75e-1	SMART
ANK	246	275	3.6e-2	SMART
ANK	279	309	3.44e1	SMART
ANK	313	342	1.97e1	SMART
ANK	346	375	3.97e-4	SMART
ANK	379	407	5.69e2	SMART
low complexity region	452	479	N/A	INTRINSIC
low complexity region	487	504	N/A	INTRINSIC
low complexity region	521	548	N/A	INTRINSIC
SH3	557	612	3.73e-16	SMART
low complexity region	648	659	N/A	INTRINSIC
PDZ	672	761	2.12e-13	SMART
Blast:PDZ	796	831	1e-10	BLAST
low complexity region	921	942	N/A	INTRINSIC
low complexity region	956	983	N/A	INTRINSIC
low complexity region	994	1024	N/A	INTRINSIC
low complexity region	1052	1081	N/A	INTRINSIC
low complexity region	1124	1139	N/A	INTRINSIC
low complexity region	1163	1176	N/A	INTRINSIC
low complexity region	1180	1221	N/A	INTRINSIC
low complexity region	1257	1276	N/A	INTRINSIC
low complexity region	1299	1324	N/A	INTRINSIC
low complexity region	1349	1360	N/A	INTRINSIC
low complexity region	1370	1405	N/A	INTRINSIC
low complexity region	1451	1467	N/A	INTRINSIC
low complexity region	1513	1533	N/A	INTRINSIC
low complexity region	1540	1556	N/A	INTRINSIC
low complexity region	1558	1571	N/A	INTRINSIC
low complexity region	1581	1615	N/A	INTRINSIC
low complexity region	1634	1668	N/A	INTRINSIC
low complexity region	1686	1721	N/A	INTRINSIC
low complexity region	1736	1747	N/A	INTRINSIC
low complexity region	1777	1788	N/A	INTRINSIC
low complexity region	1807	1824	N/A	INTRINSIC
low complexity region	1835	1853	N/A	INTRINSIC
low complexity region	1894	1908	N/A	INTRINSIC
low complexity region	1926	1937	N/A	INTRINSIC
low complexity region	1943	1977	N/A	INTRINSIC
low complexity region	1989	2005	N/A	INTRINSIC
low complexity region	2010	2030	N/A	INTRINSIC
low complexity region	2060	2084	N/A	INTRINSIC
SAM	2093	2159	1.35e-14	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000107938
AA Change: H352N

SMART Domains

Protein: ENSMUSP00000103571
Gene: ENSMUSG00000038738
AA Change: H352N

Domain	Start	End	E-Value	Type
low complexity region	17	46	N/A	INTRINSIC
Pfam:FERM_f0	73	156	6.6e-17	PFAM
ANK	212	242	5.75e-1	SMART
ANK	246	275	3.6e-2	SMART
ANK	279	309	3.44e1	SMART
ANK	313	342	1.97e1	SMART
ANK	346	375	3.97e-4	SMART
ANK	379	407	5.69e2	SMART
low complexity region	452	479	N/A	INTRINSIC
low complexity region	487	504	N/A	INTRINSIC
low complexity region	521	548	N/A	INTRINSIC
SH3	557	612	3.73e-16	SMART
low complexity region	648	659	N/A	INTRINSIC
PDZ	672	761	2.12e-13	SMART
Blast:PDZ	804	839	5e-11	BLAST
low complexity region	929	950	N/A	INTRINSIC
low complexity region	964	991	N/A	INTRINSIC
low complexity region	1002	1032	N/A	INTRINSIC
low complexity region	1060	1089	N/A	INTRINSIC
low complexity region	1132	1147	N/A	INTRINSIC
low complexity region	1171	1184	N/A	INTRINSIC
low complexity region	1188	1229	N/A	INTRINSIC
low complexity region	1265	1284	N/A	INTRINSIC
low complexity region	1307	1332	N/A	INTRINSIC
low complexity region	1357	1368	N/A	INTRINSIC
low complexity region	1378	1413	N/A	INTRINSIC
low complexity region	1459	1475	N/A	INTRINSIC
low complexity region	1521	1541	N/A	INTRINSIC
low complexity region	1548	1564	N/A	INTRINSIC
low complexity region	1566	1579	N/A	INTRINSIC
low complexity region	1589	1623	N/A	INTRINSIC
low complexity region	1642	1676	N/A	INTRINSIC
low complexity region	1694	1729	N/A	INTRINSIC
low complexity region	1744	1755	N/A	INTRINSIC
low complexity region	1785	1796	N/A	INTRINSIC
low complexity region	1815	1832	N/A	INTRINSIC
low complexity region	1843	1861	N/A	INTRINSIC
low complexity region	1902	1916	N/A	INTRINSIC
low complexity region	1934	1945	N/A	INTRINSIC
low complexity region	1951	1985	N/A	INTRINSIC
low complexity region	1997	2013	N/A	INTRINSIC
low complexity region	2018	2038	N/A	INTRINSIC
low complexity region	2068	2092	N/A	INTRINSIC
SAM	2101	2167	1.35e-14	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206373

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the SHANK (SH3 domain and ankyrin repeat containing) family of proteins. Members of this family act as scaffold proteins that are required for the development and function of neuronal synapses. Deletions in this gene may be associated with autism spectrum disorder in males. [provided by RefSeq, Apr 2016]
PHENOTYPE: Homozygous mutation of this gene results in smaller pyramidal neuron dendritic spines, smaller and thinner postsynaptic density of central excitatory synapses, weaker synaptic transmission, increased anxiety-related behavior, and impaired contextual fearmemory, but enhanced spatial learning. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 43 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700062C07Rik	A	G	18: 24,606,013 (GRCm39)	N36S	possibly damaging	Het
Ankrd39	A	G	1: 36,586,236 (GRCm39)	S11P	probably benign	Het
Aox1	A	G	1: 58,338,978 (GRCm39)	S324G	probably benign	Het
Atl3	T	C	19: 7,509,703 (GRCm39)	V477A	probably benign	Het
Bcar1	T	C	8: 112,447,525 (GRCm39)	T151A	probably benign	Het
Cdc42bpg	A	G	19: 6,365,296 (GRCm39)	T718A	possibly damaging	Het
Col9a1	C	T	1: 24,283,462 (GRCm39)	R843C	probably damaging	Het
Dnah12	T	A	14: 26,430,341 (GRCm39)	D316E	possibly damaging	Het
Fat2	A	G	11: 55,175,127 (GRCm39)	V1862A	probably damaging	Het
Fbxw5	C	A	2: 25,393,472 (GRCm39)	N233K	probably damaging	Het
Fcer2a	A	G	8: 3,738,831 (GRCm39)	F75L	probably benign	Het
Fhod3	A	G	18: 25,123,123 (GRCm39)	K271R	probably null	Het
Gimd1	T	C	3: 132,350,169 (GRCm39)	V144A	possibly damaging	Het
Glt1d1	T	C	5: 127,768,176 (GRCm39)		probably null	Het
Hecw2	C	T	1: 53,871,804 (GRCm39)	V1381M	probably damaging	Het
Kansl1l	C	T	1: 66,812,637 (GRCm39)	D459N	probably damaging	Het
Lmtk3	G	A	7: 45,443,486 (GRCm39)	C723Y	possibly damaging	Het
Muc4	T	C	16: 32,576,200 (GRCm39)		probably benign	Het
Myom1	T	A	17: 71,399,135 (GRCm39)	V999E	probably damaging	Het
Nckap5	A	G	1: 125,955,376 (GRCm39)	L460P	probably benign	Het
Or12d17	T	C	17: 37,777,715 (GRCm39)	M206T	probably damaging	Het
Phf13	A	T	4: 152,076,552 (GRCm39)	N213K	probably damaging	Het
Phldb3	T	C	7: 24,326,745 (GRCm39)	I591T	probably damaging	Het
Pik3cb	T	C	9: 98,983,229 (GRCm39)		probably null	Het
Pkd1l1	C	T	11: 8,815,543 (GRCm39)	R1456K	possibly damaging	Het
Plekhh2	A	G	17: 84,893,765 (GRCm39)	E860G	possibly damaging	Het
Resf1	T	A	6: 149,227,041 (GRCm39)	M29K	possibly damaging	Het
Rest	A	G	5: 77,429,959 (GRCm39)	T793A	probably benign	Het
Ropn1	C	T	16: 34,498,826 (GRCm39)	Q205*	probably null	Het
Sacs	A	C	14: 61,440,906 (GRCm39)	K984T	probably benign	Het
Samd11	G	A	4: 156,334,943 (GRCm39)	R102C	probably damaging	Het
Satl1	A	G	X: 111,316,033 (GRCm39)	S141P	probably benign	Het
Slc22a27	A	T	19: 7,903,244 (GRCm39)	I162K	possibly damaging	Het
Snx8	A	G	5: 140,341,800 (GRCm39)	L121P	probably damaging	Het
Sumf1	A	C	6: 108,131,974 (GRCm39)	V156G	probably damaging	Het
Tln1	A	T	4: 43,536,104 (GRCm39)	V2027E	probably damaging	Het
Trdn	A	G	10: 33,326,994 (GRCm39)	I594M	probably benign	Het
Trim5	C	G	7: 103,926,022 (GRCm39)	E180Q	possibly damaging	Het
Tsen2	A	G	6: 115,524,785 (GRCm39)		probably benign	Het
Tubb1	A	T	2: 174,297,526 (GRCm39)	E45V	probably null	Het
Vmn2r67	T	A	7: 84,799,722 (GRCm39)		probably null	Het
Zcchc14	CTGATGGTGGTGGTGATGGTGGTGG	CTGATGGTGGTGG	8: 122,331,031 (GRCm39)		probably benign	Het
Zfp160	T	A	17: 21,246,000 (GRCm39)	F183L	probably benign	Het

Other mutations in Shank1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00970:Shank1	APN	7	44,003,662 (GRCm39)	missense	possibly damaging	0.89
IGL01293:Shank1	APN	7	44,003,660 (GRCm39)	missense	possibly damaging	0.59
IGL01319:Shank1	APN	7	44,002,547 (GRCm39)	missense	possibly damaging	0.93
IGL01347:Shank1	APN	7	43,991,544 (GRCm39)	missense	unknown
IGL01621:Shank1	APN	7	44,001,023 (GRCm39)	missense	unknown
IGL01621:Shank1	APN	7	43,991,889 (GRCm39)	missense	unknown
IGL01964:Shank1	APN	7	43,975,102 (GRCm39)	missense	unknown
IGL02309:Shank1	APN	7	43,962,266 (GRCm39)	missense	unknown
IGL02325:Shank1	APN	7	43,976,504 (GRCm39)	nonsense	probably null
IGL02387:Shank1	APN	7	44,006,361 (GRCm39)	missense	possibly damaging	0.77
IGL02958:Shank1	APN	7	44,003,897 (GRCm39)	missense	possibly damaging	0.59
R0098:Shank1	UTSW	7	43,962,709 (GRCm39)	missense	unknown
R0098:Shank1	UTSW	7	43,962,709 (GRCm39)	missense	unknown
R0197:Shank1	UTSW	7	44,001,718 (GRCm39)	missense	unknown
R0326:Shank1	UTSW	7	43,968,594 (GRCm39)	missense	unknown
R0365:Shank1	UTSW	7	44,003,401 (GRCm39)	missense	possibly damaging	0.89
R0883:Shank1	UTSW	7	44,001,718 (GRCm39)	missense	unknown
R1033:Shank1	UTSW	7	44,006,220 (GRCm39)	missense	possibly damaging	0.77
R1390:Shank1	UTSW	7	44,006,462 (GRCm39)	missense	probably damaging	1.00
R1453:Shank1	UTSW	7	43,965,499 (GRCm39)	missense	unknown
R1594:Shank1	UTSW	7	43,976,647 (GRCm39)	nonsense	probably null
R1713:Shank1	UTSW	7	43,969,161 (GRCm39)	missense	unknown
R1783:Shank1	UTSW	7	44,002,161 (GRCm39)	missense	possibly damaging	0.70
R1869:Shank1	UTSW	7	43,991,539 (GRCm39)	nonsense	probably null
R1870:Shank1	UTSW	7	43,991,539 (GRCm39)	nonsense	probably null
R1959:Shank1	UTSW	7	43,974,801 (GRCm39)	missense	unknown
R1962:Shank1	UTSW	7	43,993,747 (GRCm39)	critical splice donor site	probably null
R2406:Shank1	UTSW	7	44,006,376 (GRCm39)	missense	possibly damaging	0.94
R2509:Shank1	UTSW	7	44,001,547 (GRCm39)	missense	unknown
R2509:Shank1	UTSW	7	44,001,148 (GRCm39)	missense	unknown
R3877:Shank1	UTSW	7	43,994,416 (GRCm39)	missense	unknown
R4041:Shank1	UTSW	7	43,991,586 (GRCm39)	missense	unknown
R4303:Shank1	UTSW	7	43,991,898 (GRCm39)	missense	unknown
R4431:Shank1	UTSW	7	43,969,076 (GRCm39)	nonsense	probably null
R4525:Shank1	UTSW	7	44,004,014 (GRCm39)	missense	possibly damaging	0.77
R4527:Shank1	UTSW	7	44,004,014 (GRCm39)	missense	possibly damaging	0.77
R4642:Shank1	UTSW	7	43,962,565 (GRCm39)	missense	unknown
R4722:Shank1	UTSW	7	43,962,638 (GRCm39)	nonsense	probably null
R4805:Shank1	UTSW	7	43,993,135 (GRCm39)	missense	unknown
R4874:Shank1	UTSW	7	43,965,497 (GRCm39)	missense	unknown
R4904:Shank1	UTSW	7	43,983,464 (GRCm39)	intron	probably benign
R4939:Shank1	UTSW	7	43,975,586 (GRCm39)	missense	unknown
R5394:Shank1	UTSW	7	44,002,075 (GRCm39)	missense	possibly damaging	0.85
R5410:Shank1	UTSW	7	44,001,246 (GRCm39)	missense	unknown
R5556:Shank1	UTSW	7	43,993,739 (GRCm39)	intron	probably benign
R5620:Shank1	UTSW	7	43,962,160 (GRCm39)	missense	unknown
R5656:Shank1	UTSW	7	44,002,310 (GRCm39)	missense	probably benign	0.33
R5688:Shank1	UTSW	7	44,003,911 (GRCm39)	missense	possibly damaging	0.77
R5740:Shank1	UTSW	7	44,003,164 (GRCm39)	missense	possibly damaging	0.89
R5801:Shank1	UTSW	7	44,006,240 (GRCm39)	missense	possibly damaging	0.77
R6179:Shank1	UTSW	7	44,006,630 (GRCm39)	missense	possibly damaging	0.58
R6186:Shank1	UTSW	7	44,001,990 (GRCm39)	missense	probably benign	0.18
R6245:Shank1	UTSW	7	44,001,677 (GRCm39)	missense	unknown
R6500:Shank1	UTSW	7	43,976,645 (GRCm39)	missense	unknown
R6602:Shank1	UTSW	7	44,001,760 (GRCm39)	missense	probably benign	0.03
R6655:Shank1	UTSW	7	43,976,644 (GRCm39)	missense	unknown
R6709:Shank1	UTSW	7	44,003,600 (GRCm39)	missense	probably benign	0.43
R6734:Shank1	UTSW	7	44,003,110 (GRCm39)	missense	probably benign	0.01
R6881:Shank1	UTSW	7	44,001,217 (GRCm39)	missense	unknown
R6902:Shank1	UTSW	7	44,006,239 (GRCm39)	missense	probably benign	0.39
R6975:Shank1	UTSW	7	43,962,530 (GRCm39)	splice site	probably null
R6985:Shank1	UTSW	7	43,994,337 (GRCm39)	missense	unknown
R7072:Shank1	UTSW	7	43,994,370 (GRCm39)	missense	unknown
R7116:Shank1	UTSW	7	43,976,585 (GRCm39)	missense	unknown
R7117:Shank1	UTSW	7	43,976,585 (GRCm39)	missense	unknown
R7199:Shank1	UTSW	7	44,002,564 (GRCm39)	missense	possibly damaging	0.86
R7249:Shank1	UTSW	7	43,976,585 (GRCm39)	missense	unknown
R7252:Shank1	UTSW	7	43,976,585 (GRCm39)	missense	unknown
R7552:Shank1	UTSW	7	44,002,452 (GRCm39)	missense	probably benign	0.00
R7653:Shank1	UTSW	7	43,969,093 (GRCm39)	missense	unknown
R7707:Shank1	UTSW	7	43,993,725 (GRCm39)	missense	unknown
R7801:Shank1	UTSW	7	44,001,022 (GRCm39)	missense	unknown
R7804:Shank1	UTSW	7	43,962,308 (GRCm39)	missense	unknown
R8122:Shank1	UTSW	7	43,983,015 (GRCm39)	missense	unknown
R8178:Shank1	UTSW	7	43,962,748 (GRCm39)	critical splice donor site	probably null
R8339:Shank1	UTSW	7	43,975,589 (GRCm39)	missense	unknown
R8463:Shank1	UTSW	7	44,003,605 (GRCm39)	missense	possibly damaging	0.77
R9005:Shank1	UTSW	7	44,002,409 (GRCm39)	missense	probably benign	0.00
R9023:Shank1	UTSW	7	43,968,531 (GRCm39)	missense	unknown
R9225:Shank1	UTSW	7	43,983,470 (GRCm39)	missense	unknown
R9234:Shank1	UTSW	7	43,962,579 (GRCm39)	missense	unknown
R9369:Shank1	UTSW	7	44,001,478 (GRCm39)	missense	unknown
R9432:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9433:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9434:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9467:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9474:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9475:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9476:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9477:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9519:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9544:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9545:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9598:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9633:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9698:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9699:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9701:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9755:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9783:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9784:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9800:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9802:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
R9803:Shank1	UTSW	7	43,962,342 (GRCm39)	missense	unknown
X0019:Shank1	UTSW	7	44,006,352 (GRCm39)	missense	probably damaging	1.00
X0065:Shank1	UTSW	7	44,001,353 (GRCm39)	missense	unknown
Z1088:Shank1	UTSW	7	44,001,590 (GRCm39)	missense	unknown
Z1177:Shank1	UTSW	7	43,975,068 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- CAGAGATCCCTGACCTCAAGGA -3'
(R):5'- ACACAGGGAAGAAGCTCATTAAG -3'

Sequencing Primer
(F):5'- GGAAGAGGGCCTTGGATTC -3'
(R):5'- AGTTTCTAGATGTACTGATGAATGGG -3'

Posted On

2015-06-12