Mutagenetix > Incidental Mutation

Incidental Mutation 'R4169:Rfng'

320706

Institutional Source

Beutler Lab

Gene Symbol

Rfng

Ensembl Gene

ENSMUSG00000025158

Gene Name

RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

Synonyms

radical fringe

MMRRC Submission

041010-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4169 (G1)

Quality Score

171

Status

Validated

Chromosome

Chromosomal Location

120671572-120675033 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to G at 120674772 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Arginine at position 73 (G73R)

Ref Sequence

ENSEMBL: ENSMUSP00000026156 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026156] [ENSMUST00000100134] [ENSMUST00000116305] [ENSMUST00000153678] [ENSMUST00000208737] [ENSMUST00000172809]

AlphaFold

O09009

Predicted Effect

probably benign
Transcript: ENSMUST00000026156
AA Change: G73R

PolyPhen 2 Score 0.096 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000026156
Gene: ENSMUSG00000025158
AA Change: G73R

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
Pfam:Fringe	54	306	1.1e-116	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000100134

SMART Domains

Protein: ENSMUSP00000097711
Gene: ENSMUSG00000025156

Domain	Start	End	E-Value	Type
Pfam:RPN7	123	305	4.9e-78	PFAM
PINT	356	439	5.77e-19	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000116305

SMART Domains

Protein: ENSMUSP00000112007
Gene: ENSMUSG00000025156

Domain	Start	End	E-Value	Type
Pfam:RPN7	123	305	1.3e-77	PFAM
PINT	356	439	5.77e-19	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123273

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132422

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144519

Predicted Effect

probably benign
Transcript: ENSMUST00000153678

Predicted Effect

probably benign
Transcript: ENSMUST00000208737

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156723

Predicted Effect

probably benign
Transcript: ENSMUST00000172809

SMART Domains

Protein: ENSMUSP00000133855
Gene: ENSMUSG00000025156

Domain	Start	End	E-Value	Type
low complexity region	4	24	N/A	INTRINSIC
low complexity region	37	49	N/A	INTRINSIC
Pfam:RPN7	162	344	8.8e-77	PFAM
PINT	395	478	5.77e-19	SMART

Meta Mutation Damage Score

0.0797

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.8%

Validation Efficiency

98% (48/49)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions of this gene display a completely normal phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 43 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acot7	T	C	4: 152,302,250 (GRCm39)	C121R	probably damaging	Het
Ampd1	T	A	3: 103,002,157 (GRCm39)	M546K	probably damaging	Het
Birc2	T	A	9: 7,849,684 (GRCm39)	D535V	possibly damaging	Het
Btn1a1	A	G	13: 23,649,325 (GRCm39)	L9P	probably benign	Het
Cmip	A	T	8: 118,183,656 (GRCm39)	N743I	probably damaging	Het
Col4a2	C	T	8: 11,479,391 (GRCm39)	P758L	probably benign	Het
Ddx50	A	T	10: 62,476,549 (GRCm39)	Y241*	probably null	Het
Elk3	A	G	10: 93,101,197 (GRCm39)		probably null	Het
Fbn1	T	C	2: 125,205,872 (GRCm39)	T1042A	possibly damaging	Het
Gm5445	A	G	13: 12,393,527 (GRCm39)		noncoding transcript	Het
Gnat3	T	C	5: 18,208,862 (GRCm39)	F189L	probably damaging	Het
Hectd1	T	C	12: 51,837,008 (GRCm39)	T815A	probably damaging	Het
Hmcn1	A	C	1: 150,471,750 (GRCm39)		probably null	Het
Hrc	A	G	7: 44,986,181 (GRCm39)	D444G	probably benign	Het
Ighv1-53	T	A	12: 115,122,166 (GRCm39)	I70F	possibly damaging	Het
Kat7	A	G	11: 95,171,298 (GRCm39)	F469L	probably damaging	Het
Klk14	G	A	7: 43,341,501 (GRCm39)	C51Y	probably damaging	Het
Krt81	T	A	15: 101,359,193 (GRCm39)	M242L	probably benign	Het
Krtap6-1	A	G	16: 88,828,584 (GRCm39)		probably null	Het
Man2c1	A	G	9: 57,045,310 (GRCm39)	D473G	probably benign	Het
Mthfr-ps1	T	C	5: 78,622,436 (GRCm39)		noncoding transcript	Het
Nop53	A	T	7: 15,676,244 (GRCm39)	W152R	probably benign	Het
Or5p58	A	T	7: 107,694,591 (GRCm39)	M62K	probably damaging	Het
Or6y1	T	A	1: 174,277,162 (GRCm39)	S324R	unknown	Het
Or8s8	A	G	15: 98,354,878 (GRCm39)	E229G	probably benign	Het
Pcdh1	A	T	18: 38,331,358 (GRCm39)	N548K	probably damaging	Het
Pcdhga12	A	G	18: 37,899,467 (GRCm39)	I100V	probably benign	Het
Piezo2	T	C	18: 63,183,675 (GRCm39)	H1743R	probably benign	Het
Pkdrej	A	G	15: 85,700,515 (GRCm39)	V1807A	probably benign	Het
Rabl2	T	C	15: 89,474,582 (GRCm39)	M1V	probably null	Het
Rexo5	A	G	7: 119,426,621 (GRCm39)		probably benign	Het
Rps6ka4	A	G	19: 6,809,188 (GRCm39)	L459P	possibly damaging	Het
Samd11	T	A	4: 156,332,203 (GRCm39)	D536V	probably damaging	Het
Slc9a5	A	G	8: 106,084,032 (GRCm39)	T451A	possibly damaging	Het
Snapc1	T	A	12: 74,029,265 (GRCm39)	N349K	probably benign	Het
Sox1ot	A	G	8: 12,480,544 (GRCm39)		noncoding transcript	Het
Tmem178	C	T	17: 81,252,232 (GRCm39)	H39Y	possibly damaging	Het
Trav8n-2	A	T	14: 53,583,875 (GRCm39)	T111S	possibly damaging	Het
Ttn	T	A	2: 76,703,103 (GRCm39)		probably benign	Het
Ttn	T	C	2: 76,762,909 (GRCm39)	D3250G	probably damaging	Het
Ube2nl	T	A	7: 61,199,380 (GRCm39)		noncoding transcript	Het
Vps25	T	C	11: 101,144,918 (GRCm39)	S39P	probably damaging	Het
Zkscan14	G	A	5: 145,132,985 (GRCm39)	T182I	possibly damaging	Het

Other mutations in Rfng

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01070:Rfng	APN	11	120,674,778 (GRCm39)	missense	probably damaging	0.99
IGL01073:Rfng	APN	11	120,674,747 (GRCm39)	missense	probably benign	0.01
IGL01748:Rfng	APN	11	120,674,569 (GRCm39)	missense	probably benign	0.00
R1533:Rfng	UTSW	11	120,672,687 (GRCm39)	nonsense	probably null
R2697:Rfng	UTSW	11	120,674,865 (GRCm39)	unclassified	probably benign
R4401:Rfng	UTSW	11	120,673,306 (GRCm39)	missense	possibly damaging	0.94
R4613:Rfng	UTSW	11	120,673,476 (GRCm39)	missense	probably damaging	1.00
R4738:Rfng	UTSW	11	120,674,790 (GRCm39)	missense	probably damaging	1.00
R5015:Rfng	UTSW	11	120,673,876 (GRCm39)	missense	probably damaging	0.98
R5703:Rfng	UTSW	11	120,672,842 (GRCm39)	missense	probably benign	0.40
R6191:Rfng	UTSW	11	120,673,516 (GRCm39)	missense	probably damaging	1.00
R8345:Rfng	UTSW	11	120,674,901 (GRCm39)	missense	unknown
R8846:Rfng	UTSW	11	120,674,972 (GRCm39)	missense	unknown
R9316:Rfng	UTSW	11	120,674,863 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- ACGTCTGTGGGAGAAAACGC -3'
(R):5'- TGCTGTCACTCTTAAAGGGG -3'

Sequencing Primer
(F):5'- AAACGCCGTGAGTGGGTC -3'
(R):5'- TCACTCTTAAAGGGGCCGCC -3'

Posted On

2015-06-12