Incidental Mutation 'R4107:Cox5b-ps'
ID 321434
Institutional Source Beutler Lab
Gene Symbol Cox5b-ps
Ensembl Gene ENSMUSG00000079941
Gene Name cytochrome c oxidase subunit 5B, pseudogene
Synonyms Gm11273
MMRRC Submission 040986-MU
Accession Numbers
Essential gene? Not available question?
Stock # R4107 (G1)
Quality Score 225
Status Not validated
Chromosome 13
Chromosomal Location 21685199-21685588 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 21685507 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 28 (T28A)
Ref Sequence ENSEMBL: ENSMUSP00000038961 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000044043] [ENSMUST00000104942]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000044043
AA Change: T28A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000038961
Gene: ENSMUSG00000079941
AA Change: T28A

DomainStartEndE-ValueType
Pfam:COX5B 7 129 1.2e-41 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000104942
SMART Domains Protein: ENSMUSP00000100547
Gene: ENSMUSG00000078139

DomainStartEndE-ValueType
Pfam:Fe-S_biosyn 23 125 7e-24 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000118425
Predicted Effect noncoding transcript
Transcript: ENSMUST00000202195
AA Change: T31A
Predicted Effect noncoding transcript
Transcript: ENSMUST00000224437
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 30 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acad10 G T 5: 121,769,527 (GRCm39) S643Y probably damaging Het
Acox3 T C 5: 35,758,896 (GRCm39) F369S probably damaging Het
Arhgap31 A G 16: 38,422,788 (GRCm39) S1093P probably damaging Het
Armc3 G A 2: 19,293,720 (GRCm39) V504M probably benign Het
Ccdc39 A G 3: 33,879,628 (GRCm39) L480P probably damaging Het
Col1a2 G A 6: 4,518,822 (GRCm39) probably benign Het
Cyp2j7 T C 4: 96,087,687 (GRCm39) T408A possibly damaging Het
Eml5 T C 12: 98,807,807 (GRCm39) probably null Het
Enc1 C A 13: 97,381,646 (GRCm39) A52E probably damaging Het
Fhod1 T C 8: 106,064,670 (GRCm39) probably benign Het
Itprid2 T G 2: 79,475,175 (GRCm39) L378R probably damaging Het
Kmt2c A G 5: 25,503,918 (GRCm39) S3797P possibly damaging Het
Kntc1 T A 5: 123,900,661 (GRCm39) I253N probably damaging Het
Mrc2 G A 11: 105,239,257 (GRCm39) probably null Het
Mta3 A G 17: 84,070,343 (GRCm39) D16G probably benign Het
Nlrp4f C A 13: 65,330,879 (GRCm39) C838F probably benign Het
Or5aq7 T A 2: 86,937,999 (GRCm39) H244L probably damaging Het
Pou4f3 A G 18: 42,528,987 (GRCm39) K310R probably damaging Het
Reln C A 5: 22,239,582 (GRCm39) C895F probably damaging Het
Rnasel A G 1: 153,630,542 (GRCm39) T353A probably benign Het
Rpusd4 T C 9: 35,186,424 (GRCm39) L320P probably damaging Het
Slc19a3 A T 1: 83,000,678 (GRCm39) F113Y probably damaging Het
Stbd1 A G 5: 92,753,139 (GRCm39) R210G probably benign Het
Sult6b1 G T 17: 79,214,291 (GRCm39) T6N probably damaging Het
Tas1r2 G A 4: 139,387,363 (GRCm39) R245H probably benign Het
Tpo G A 12: 30,142,585 (GRCm39) P713L probably damaging Het
Trim68 G T 7: 102,327,658 (GRCm39) H432N probably benign Het
Ttn T C 2: 76,569,485 (GRCm39) Q18809R probably damaging Het
Xcr1 A G 9: 123,685,153 (GRCm39) I203T possibly damaging Het
Zfp407 T A 18: 84,361,132 (GRCm39) T1721S possibly damaging Het
Other mutations in Cox5b-ps
AlleleSourceChrCoordTypePredicted EffectPPH Score
R1980:Cox5b-ps UTSW 13 21,685,294 (GRCm39) missense possibly damaging 0.48
R9136:Cox5b-ps UTSW 13 21,685,587 (GRCm39) start codon destroyed probably null 0.94
R9635:Cox5b-ps UTSW 13 21,685,294 (GRCm39) missense probably benign
R9749:Cox5b-ps UTSW 13 21,685,515 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- GATGCAGCCCACTATTCTCTTG -3'
(R):5'- ATAATTTGAGTGCACTGGGCC -3'

Sequencing Primer
(F):5'- CACTATTCTCTTGTTGCTGATGG -3'
(R):5'- ACTCACAGAGGTATGCTTGC -3'
Posted On 2015-06-12