Incidental Mutation 'R4292:Cckar'
| ID |
323112 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Cckar
|
| Ensembl Gene |
ENSMUSG00000029193 |
| Gene Name |
cholecystokinin A receptor |
| Synonyms |
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.113)
|
| Stock # |
R4292 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
5 |
| Chromosomal Location |
53855827-53865046 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 53863839 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Proline
at position 41
(S41P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000031093
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000031093]
[ENSMUST00000200691]
|
| AlphaFold |
O08786 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000031093
AA Change: S41P
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000031093
Gene: ENSMUSG00000029193
AA Change: S41P
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:CholecysA-Rec_N
|
1 |
47 |
8.8e-29 |
PFAM |
|
Pfam:7tm_4
|
48 |
252 |
7.2e-12 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
52 |
393 |
2.6e-10 |
PFAM |
|
Pfam:7tm_1
|
58 |
378 |
1.1e-66 |
PFAM |
|
low complexity region
|
399 |
416 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000200691
|
| SMART Domains |
Protein: ENSMUSP00000144103
Gene: ENSMUSG00000029193
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_1
|
1 |
307 |
1.6e-59 |
PFAM |
|
Pfam:7tm_4
|
3 |
181 |
1.8e-6 |
PFAM |
|
low complexity region
|
328 |
345 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000202946
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.5%
- 20x: 95.8%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a G-protein coupled receptor that binds non-sulfated members of the cholecystokinin (CCK) family of peptide hormones. This receptor is a major physiologic mediator of pancreatic enzyme secretion and smooth muscle contraction of the gallbladder and stomach. In the central and peripheral nervous system this receptor regulates satiety and the release of beta-endorphin and dopamine. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutant mice cannot regulate core body temperature in response to changes in ambient temperature. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 35 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts9 |
T |
C |
6: 92,772,977 (GRCm39) |
K1232E |
possibly damaging |
Het |
| Angel1 |
A |
G |
12: 86,767,057 (GRCm39) |
Y440H |
probably damaging |
Het |
| Bclaf1 |
A |
G |
10: 20,199,524 (GRCm39) |
Q20R |
probably damaging |
Het |
| Bivm |
A |
T |
1: 44,177,793 (GRCm39) |
R364S |
probably damaging |
Het |
| Brwd1 |
G |
A |
16: 95,818,804 (GRCm39) |
P1343S |
probably damaging |
Het |
| Cep68 |
A |
T |
11: 20,190,079 (GRCm39) |
V311D |
probably damaging |
Het |
| Cip2a |
T |
A |
16: 48,833,612 (GRCm39) |
F571Y |
probably benign |
Het |
| Fhdc1 |
C |
A |
3: 84,352,133 (GRCm39) |
V1031F |
probably benign |
Het |
| Gcn1 |
G |
A |
5: 115,714,207 (GRCm39) |
A116T |
possibly damaging |
Het |
| Gucy1a1 |
A |
T |
3: 82,002,066 (GRCm39) |
F671Y |
possibly damaging |
Het |
| Hddc2 |
A |
T |
10: 31,190,583 (GRCm39) |
M48L |
possibly damaging |
Het |
| Kif18a |
A |
T |
2: 109,128,471 (GRCm39) |
I376L |
probably damaging |
Het |
| Lbr |
C |
T |
1: 181,648,267 (GRCm39) |
C398Y |
probably damaging |
Het |
| Myh2 |
A |
G |
11: 67,085,723 (GRCm39) |
K1855R |
possibly damaging |
Het |
| Or2v2 |
T |
A |
11: 49,004,254 (GRCm39) |
I100L |
probably benign |
Het |
| Or5b98 |
G |
A |
19: 12,931,520 (GRCm39) |
C189Y |
possibly damaging |
Het |
| Or8d2b |
A |
G |
9: 38,788,609 (GRCm39) |
I46V |
probably damaging |
Het |
| Pcdhb5 |
T |
A |
18: 37,455,734 (GRCm39) |
S705T |
possibly damaging |
Het |
| Pdss2 |
A |
G |
10: 43,097,834 (GRCm39) |
Y26C |
probably benign |
Het |
| Pgm2l1 |
A |
G |
7: 99,899,508 (GRCm39) |
T41A |
probably damaging |
Het |
| Prss58 |
T |
C |
6: 40,874,244 (GRCm39) |
D144G |
probably damaging |
Het |
| Rrp12 |
T |
C |
19: 41,861,344 (GRCm39) |
|
probably null |
Het |
| Sash1 |
A |
G |
10: 8,606,006 (GRCm39) |
S795P |
possibly damaging |
Het |
| Sec16a |
A |
G |
2: 26,312,167 (GRCm39) |
Y1998H |
probably benign |
Het |
| Slc22a21 |
T |
C |
11: 53,860,329 (GRCm39) |
D34G |
probably damaging |
Het |
| Slco4c1 |
C |
G |
1: 96,772,381 (GRCm39) |
|
probably null |
Het |
| Srsf6 |
T |
C |
2: 162,776,636 (GRCm39) |
|
probably benign |
Het |
| Tgfb2 |
T |
C |
1: 186,364,735 (GRCm39) |
H253R |
probably damaging |
Het |
| Top3b |
A |
T |
16: 16,701,383 (GRCm39) |
I232F |
probably damaging |
Het |
| Trim24 |
G |
A |
6: 37,877,627 (GRCm39) |
R39H |
possibly damaging |
Het |
| Tsc22d1 |
T |
A |
14: 76,656,320 (GRCm39) |
M851K |
probably benign |
Het |
| Ttn |
A |
G |
2: 76,762,855 (GRCm39) |
V3268A |
possibly damaging |
Het |
| Unc79 |
A |
T |
12: 103,149,703 (GRCm39) |
Q2599L |
probably damaging |
Het |
| Vmn1r192 |
T |
A |
13: 22,371,465 (GRCm39) |
I252F |
probably damaging |
Het |
| Vwce |
A |
G |
19: 10,636,996 (GRCm39) |
T693A |
probably benign |
Het |
|
| Other mutations in Cckar |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00422:Cckar
|
APN |
5 |
53,857,171 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
IGL00568:Cckar
|
APN |
5 |
53,864,643 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL00766:Cckar
|
APN |
5 |
53,857,378 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL00960:Cckar
|
APN |
5 |
53,858,634 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02424:Cckar
|
APN |
5 |
53,863,770 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
IGL03002:Cckar
|
APN |
5 |
53,860,247 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0167:Cckar
|
UTSW |
5 |
53,863,795 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0302:Cckar
|
UTSW |
5 |
53,857,641 (GRCm39) |
frame shift |
probably null |
|
|
R0366:Cckar
|
UTSW |
5 |
53,857,507 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0391:Cckar
|
UTSW |
5 |
53,863,595 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0981:Cckar
|
UTSW |
5 |
53,863,632 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1619:Cckar
|
UTSW |
5 |
53,857,409 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1644:Cckar
|
UTSW |
5 |
53,857,215 (GRCm39) |
missense |
probably benign |
|
|
R1779:Cckar
|
UTSW |
5 |
53,857,321 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2184:Cckar
|
UTSW |
5 |
53,860,254 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R4290:Cckar
|
UTSW |
5 |
53,863,839 (GRCm39) |
missense |
probably benign |
|
|
R4291:Cckar
|
UTSW |
5 |
53,863,839 (GRCm39) |
missense |
probably benign |
|
|
R4294:Cckar
|
UTSW |
5 |
53,863,839 (GRCm39) |
missense |
probably benign |
|
|
R4518:Cckar
|
UTSW |
5 |
53,857,264 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4583:Cckar
|
UTSW |
5 |
53,857,124 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5139:Cckar
|
UTSW |
5 |
53,860,265 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5505:Cckar
|
UTSW |
5 |
53,860,410 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6207:Cckar
|
UTSW |
5 |
53,857,186 (GRCm39) |
missense |
probably benign |
|
|
R6415:Cckar
|
UTSW |
5 |
53,860,398 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7127:Cckar
|
UTSW |
5 |
53,863,817 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7372:Cckar
|
UTSW |
5 |
53,864,624 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7966:Cckar
|
UTSW |
5 |
53,858,580 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R8790:Cckar
|
UTSW |
5 |
53,857,291 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8897:Cckar
|
UTSW |
5 |
53,864,583 (GRCm39) |
start gained |
probably benign |
|
|
R9010:Cckar
|
UTSW |
5 |
53,857,163 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9054:Cckar
|
UTSW |
5 |
53,860,424 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9205:Cckar
|
UTSW |
5 |
53,864,587 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9396:Cckar
|
UTSW |
5 |
53,864,623 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9646:Cckar
|
UTSW |
5 |
53,863,608 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9656:Cckar
|
UTSW |
5 |
53,857,318 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9709:Cckar
|
UTSW |
5 |
53,860,201 (GRCm39) |
critical splice donor site |
probably null |
|
|
X0028:Cckar
|
UTSW |
5 |
53,864,616 (GRCm39) |
missense |
probably benign |
0.01 |
|
X0028:Cckar
|
UTSW |
5 |
53,864,615 (GRCm39) |
missense |
probably benign |
0.22 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGAGGTTGAACGGCATGCAG -3'
(R):5'- TCCTGACGGATCCCATTAACATC -3'
Sequencing Primer
(F):5'- TTGAACGGCATGCAGAAGAG -3'
(R):5'- CCAACCTTTAAAAAGCAATCGGATTG -3'
|
| Posted On |
2015-06-20 |
Incidental Mutation