Mutagenetix > Incidental Mutation

Incidental Mutation 'R4360:Polq'

324877

Institutional Source

Beutler Lab

Gene Symbol

Polq

Ensembl Gene

ENSMUSG00000034206

Gene Name

polymerase (DNA directed), theta

Synonyms

A430110D14Rik

MMRRC Submission

041111-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.492) question?

Stock #

R4360 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

36832148-36915779 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 36880701 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 955 (D955G)

Ref Sequence

ENSEMBL: ENSMUSP00000059757 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054034] [ENSMUST00000071452] [ENSMUST00000182946] [ENSMUST00000183112]

AlphaFold

Q8CGS6

Predicted Effect

probably benign
Transcript: ENSMUST00000054034
AA Change: D955G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000059757
Gene: ENSMUSG00000034206
AA Change: D955G

Domain	Start	End	E-Value	Type
low complexity region	2	29	N/A	INTRINSIC
low complexity region	38	55	N/A	INTRINSIC
DEXDc	87	298	4.09e-18	SMART
HELICc	398	484	4.02e-17	SMART
Blast:DEXDc	485	550	2e-25	BLAST
low complexity region	609	626	N/A	INTRINSIC
PDB:2ZJA\|A	712	826	5e-9	PDB
low complexity region	845	852	N/A	INTRINSIC
low complexity region	898	911	N/A	INTRINSIC
low complexity region	1126	1149	N/A	INTRINSIC
low complexity region	1813	1822	N/A	INTRINSIC
POLAc	2265	2504	3.3e-101	SMART
low complexity region	2521	2531	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000071452
AA Change: D676G

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000071396
Gene: ENSMUSG00000034206
AA Change: D676G

Domain	Start	End	E-Value	Type
low complexity region	2	29	N/A	INTRINSIC
low complexity region	38	55	N/A	INTRINSIC
Pfam:DEAD	92	216	5.9e-12	PFAM
low complexity region	330	347	N/A	INTRINSIC
PDB:2ZJA\|A	433	547	5e-9	PDB
low complexity region	566	573	N/A	INTRINSIC
low complexity region	619	632	N/A	INTRINSIC
low complexity region	847	870	N/A	INTRINSIC
low complexity region	1534	1543	N/A	INTRINSIC
POLAc	1986	2225	3.3e-101	SMART
low complexity region	2242	2252	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000182622

Predicted Effect

probably benign
Transcript: ENSMUST00000182946

SMART Domains

Protein: ENSMUSP00000138685
Gene: ENSMUSG00000034206

Domain	Start	End	E-Value	Type
low complexity region	2	29	N/A	INTRINSIC
low complexity region	38	55	N/A	INTRINSIC
Pfam:DEAD	92	164	1.3e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000183112

SMART Domains

Protein: ENSMUSP00000138648
Gene: ENSMUSG00000034206

Domain	Start	End	E-Value	Type
low complexity region	2	29	N/A	INTRINSIC
low complexity region	38	55	N/A	INTRINSIC
Pfam:DEAD	92	164	1.3e-9	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.6%

Validation Efficiency

100% (50/50)

MGI Phenotype

PHENOTYPE: Animals carrying a homozygous mutation at this locus display elevated levels of chromosomal damage. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 43 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930578I07Rik	T	C	14: 67,175,850 (GRCm39)		noncoding transcript	Het
Adgra3	T	C	5: 50,147,552 (GRCm39)	E496G	possibly damaging	Het
Atg14	C	G	14: 47,805,827 (GRCm39)	E13Q	probably benign	Het
BC023105	G	T	18: 60,575,073 (GRCm39)		noncoding transcript	Het
Chd6	A	G	2: 160,791,776 (GRCm39)	V2527A	possibly damaging	Het
Csn1s2a	G	T	5: 87,929,700 (GRCm39)	V100L	possibly damaging	Het
Fah	G	A	7: 84,238,856 (GRCm39)	L330F	probably damaging	Het
Fmo2	T	C	1: 162,709,583 (GRCm39)	N268S	probably damaging	Het
Foxg1	CCAGCAGCAGCAGCAGCAGC	CCAGCAGCAGCAGCAGC	12: 49,431,475 (GRCm39)		probably benign	Het
Frmd4a	A	T	2: 4,606,052 (GRCm39)	H287L	probably damaging	Het
G2e3	T	A	12: 51,410,197 (GRCm39)		probably benign	Het
Gm1758	A	T	16: 14,324,215 (GRCm39)		noncoding transcript	Het
Gm7204	T	C	16: 48,039,196 (GRCm39)		noncoding transcript	Het
Gm829	T	C	4: 45,718,819 (GRCm39)		noncoding transcript	Het
Hspa14	A	G	2: 3,503,560 (GRCm39)	V116A	possibly damaging	Het
Hspa4	T	C	11: 53,155,919 (GRCm39)	Y662C	probably damaging	Het
Islr	T	A	9: 58,064,887 (GRCm39)	N207Y	probably damaging	Het
Lipc	T	C	9: 70,759,864 (GRCm39)		probably benign	Het
Ncor2	A	G	5: 125,106,036 (GRCm39)	S1546P	probably damaging	Het
Or13a25	T	C	7: 140,247,730 (GRCm39)	F170L	probably damaging	Het
Or56a3	A	C	7: 104,735,460 (GRCm39)	E179A	probably damaging	Het
Or7g18	G	A	9: 18,787,013 (GRCm39)	C127Y	probably damaging	Het
Parp4	A	G	14: 56,866,661 (GRCm39)	D1075G	possibly damaging	Het
Pkp2	A	G	16: 16,086,546 (GRCm39)	I736V	probably benign	Het
Plekha8	T	C	6: 54,599,171 (GRCm39)	I235T	probably benign	Het
Pramel16	A	G	4: 143,677,433 (GRCm39)	F49L	possibly damaging	Het
Psmd1	A	G	1: 86,061,459 (GRCm39)	K890E	probably damaging	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Scpep1	A	G	11: 88,821,070 (GRCm39)	Y366H	possibly damaging	Het
Slc18a3	A	G	14: 32,185,882 (GRCm39)	V167A	probably benign	Het
Sp8	A	G	12: 118,812,400 (GRCm39)	D85G	possibly damaging	Het
Stard3nl	G	A	13: 19,554,654 (GRCm39)	S144L	probably damaging	Het
Stk4	A	G	2: 163,930,879 (GRCm39)	E160G	possibly damaging	Het
Tbcb	T	C	7: 29,926,460 (GRCm39)	N119S	probably benign	Het
Tnc	G	T	4: 63,935,161 (GRCm39)	R592S	probably benign	Het
Trem3	T	A	17: 48,556,801 (GRCm39)	S91T	probably benign	Het
Trpc6	A	G	9: 8,610,267 (GRCm39)	E245G	probably benign	Het
Usp40	C	T	1: 87,880,083 (GRCm39)	R1036H	probably damaging	Het
Usp47	G	T	7: 111,654,139 (GRCm39)	G112C	probably damaging	Het
Wdr35	T	C	12: 9,024,149 (GRCm39)		probably benign	Het
Zc3h14	A	G	12: 98,746,456 (GRCm39)	K555R	probably benign	Het
Zfp26	T	C	9: 20,349,869 (GRCm39)	S232G	probably benign	Het
Zfp811	T	C	17: 33,017,432 (GRCm39)	T202A	probably benign	Het

Other mutations in Polq

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00336:Polq	APN	16	36,885,609 (GRCm39)	splice site	probably benign
IGL00539:Polq	APN	16	36,880,931 (GRCm39)	missense	probably damaging	0.98
IGL00960:Polq	APN	16	36,880,874 (GRCm39)	missense	probably damaging	0.96
IGL01100:Polq	APN	16	36,881,474 (GRCm39)	missense	probably benign
IGL01112:Polq	APN	16	36,837,671 (GRCm39)	missense	probably damaging	1.00
IGL01138:Polq	APN	16	36,866,231 (GRCm39)	missense	possibly damaging	0.94
IGL01432:Polq	APN	16	36,892,184 (GRCm39)	splice site	probably benign
IGL01522:Polq	APN	16	36,848,265 (GRCm39)	missense	probably damaging	1.00
IGL01565:Polq	APN	16	36,833,475 (GRCm39)	missense	probably benign	0.00
IGL01592:Polq	APN	16	36,855,212 (GRCm39)	missense	probably benign	0.01
IGL01690:Polq	APN	16	36,883,200 (GRCm39)	missense	probably damaging	0.97
IGL01943:Polq	APN	16	36,881,805 (GRCm39)	missense	possibly damaging	0.47
IGL02531:Polq	APN	16	36,882,736 (GRCm39)	missense	possibly damaging	0.75
IGL02553:Polq	APN	16	36,862,130 (GRCm39)	missense	probably damaging	1.00
IGL02623:Polq	APN	16	36,880,737 (GRCm39)	missense	probably benign	0.04
IGL02692:Polq	APN	16	36,880,989 (GRCm39)	missense	probably damaging	1.00
IGL02717:Polq	APN	16	36,843,102 (GRCm39)	missense	probably damaging	1.00
IGL02937:Polq	APN	16	36,833,471 (GRCm39)	missense	probably benign	0.14
IGL02959:Polq	APN	16	36,906,928 (GRCm39)	missense	probably damaging	1.00
IGL03086:Polq	APN	16	36,911,411 (GRCm39)	missense	probably benign	0.02
IGL03141:Polq	APN	16	36,837,720 (GRCm39)	splice site	probably benign
IGL03302:Polq	APN	16	36,892,134 (GRCm39)	missense	probably damaging	1.00
IGL03393:Polq	APN	16	36,865,156 (GRCm39)	missense	probably damaging	1.00
R0013_Polq_667	UTSW	16	36,882,201 (GRCm39)	missense	possibly damaging	0.56
R4238_Polq_233	UTSW	16	36,833,543 (GRCm39)	missense	probably damaging	1.00
R4280_polq_867	UTSW	16	36,902,419 (GRCm39)	missense	probably damaging	1.00
G1Funyon:Polq	UTSW	16	36,882,181 (GRCm39)	missense	probably damaging	1.00
PIT4403001:Polq	UTSW	16	36,880,949 (GRCm39)	missense	probably benign	0.00
R0013:Polq	UTSW	16	36,882,201 (GRCm39)	missense	possibly damaging	0.56
R0082:Polq	UTSW	16	36,837,619 (GRCm39)	missense	probably benign	0.01
R0212:Polq	UTSW	16	36,887,216 (GRCm39)	missense	probably damaging	0.99
R0387:Polq	UTSW	16	36,909,679 (GRCm39)	missense	probably damaging	1.00
R0387:Polq	UTSW	16	36,849,792 (GRCm39)	missense	probably damaging	1.00
R0427:Polq	UTSW	16	36,882,355 (GRCm39)	nonsense	probably null
R0454:Polq	UTSW	16	36,855,252 (GRCm39)	missense	probably damaging	0.98
R0513:Polq	UTSW	16	36,914,864 (GRCm39)	missense	probably damaging	1.00
R0622:Polq	UTSW	16	36,881,355 (GRCm39)	missense	probably benign	0.02
R0848:Polq	UTSW	16	36,882,492 (GRCm39)	missense	probably benign	0.08
R1142:Polq	UTSW	16	36,833,579 (GRCm39)	missense	probably damaging	0.98
R1218:Polq	UTSW	16	36,849,808 (GRCm39)	missense	possibly damaging	0.93
R1331:Polq	UTSW	16	36,862,109 (GRCm39)	missense	probably damaging	1.00
R1398:Polq	UTSW	16	36,882,857 (GRCm39)	missense	possibly damaging	0.87
R1424:Polq	UTSW	16	36,906,890 (GRCm39)	missense	probably damaging	1.00
R1644:Polq	UTSW	16	36,880,626 (GRCm39)	missense	probably damaging	0.96
R1777:Polq	UTSW	16	36,880,586 (GRCm39)	missense	possibly damaging	0.94
R1820:Polq	UTSW	16	36,849,780 (GRCm39)	missense	possibly damaging	0.48
R1854:Polq	UTSW	16	36,882,471 (GRCm39)	missense	probably benign	0.01
R1880:Polq	UTSW	16	36,906,954 (GRCm39)	missense	possibly damaging	0.90
R1932:Polq	UTSW	16	36,882,666 (GRCm39)	missense	possibly damaging	0.92
R2008:Polq	UTSW	16	36,882,844 (GRCm39)	missense	probably damaging	0.96
R2014:Polq	UTSW	16	36,898,728 (GRCm39)	missense	probably damaging	1.00
R2026:Polq	UTSW	16	36,883,107 (GRCm39)	missense	possibly damaging	0.93
R2178:Polq	UTSW	16	36,883,191 (GRCm39)	missense	probably damaging	1.00
R2259:Polq	UTSW	16	36,882,459 (GRCm39)	missense	probably benign	0.03
R2266:Polq	UTSW	16	36,882,515 (GRCm39)	missense	possibly damaging	0.59
R2305:Polq	UTSW	16	36,882,699 (GRCm39)	missense	probably damaging	0.99
R2370:Polq	UTSW	16	36,894,301 (GRCm39)	missense	probably damaging	1.00
R2504:Polq	UTSW	16	36,832,304 (GRCm39)	missense	unknown
R2517:Polq	UTSW	16	36,909,687 (GRCm39)	missense	probably damaging	1.00
R2697:Polq	UTSW	16	36,862,515 (GRCm39)	missense	probably damaging	1.00
R2858:Polq	UTSW	16	36,883,115 (GRCm39)	missense	possibly damaging	0.88
R3436:Polq	UTSW	16	36,882,699 (GRCm39)	missense	probably damaging	0.99
R3437:Polq	UTSW	16	36,882,699 (GRCm39)	missense	probably damaging	0.99
R3699:Polq	UTSW	16	36,862,518 (GRCm39)	missense	probably damaging	1.00
R3838:Polq	UTSW	16	36,898,711 (GRCm39)	missense	probably damaging	1.00
R3875:Polq	UTSW	16	36,894,389 (GRCm39)	missense	probably damaging	0.99
R4050:Polq	UTSW	16	36,913,182 (GRCm39)	critical splice acceptor site	probably null
R4172:Polq	UTSW	16	36,881,120 (GRCm39)	missense	probably benign	0.02
R4238:Polq	UTSW	16	36,833,543 (GRCm39)	missense	probably damaging	1.00
R4240:Polq	UTSW	16	36,833,543 (GRCm39)	missense	probably damaging	1.00
R4280:Polq	UTSW	16	36,902,419 (GRCm39)	missense	probably damaging	1.00
R4296:Polq	UTSW	16	36,881,663 (GRCm39)	missense	possibly damaging	0.94
R4373:Polq	UTSW	16	36,833,543 (GRCm39)	missense	probably damaging	1.00
R4375:Polq	UTSW	16	36,833,543 (GRCm39)	missense	probably damaging	1.00
R4376:Polq	UTSW	16	36,833,543 (GRCm39)	missense	probably damaging	1.00
R4509:Polq	UTSW	16	36,868,925 (GRCm39)	missense	probably damaging	1.00
R4510:Polq	UTSW	16	36,868,925 (GRCm39)	missense	probably damaging	1.00
R4511:Polq	UTSW	16	36,868,925 (GRCm39)	missense	probably damaging	1.00
R4543:Polq	UTSW	16	36,881,147 (GRCm39)	missense	probably benign	0.43
R4633:Polq	UTSW	16	36,868,904 (GRCm39)	missense	probably damaging	1.00
R4739:Polq	UTSW	16	36,862,109 (GRCm39)	missense	probably damaging	1.00
R4834:Polq	UTSW	16	36,848,176 (GRCm39)	missense	probably damaging	1.00
R4841:Polq	UTSW	16	36,869,145 (GRCm39)	critical splice donor site	probably null
R4842:Polq	UTSW	16	36,869,145 (GRCm39)	critical splice donor site	probably null
R4937:Polq	UTSW	16	36,848,274 (GRCm39)	missense	probably benign	0.01
R4955:Polq	UTSW	16	36,881,444 (GRCm39)	missense	probably benign	0.32
R4992:Polq	UTSW	16	36,881,524 (GRCm39)	missense	possibly damaging	0.59
R5008:Polq	UTSW	16	36,882,749 (GRCm39)	missense	probably benign
R5221:Polq	UTSW	16	36,862,540 (GRCm39)	missense	probably damaging	0.98
R5254:Polq	UTSW	16	36,909,681 (GRCm39)	missense	probably damaging	1.00
R5292:Polq	UTSW	16	36,881,745 (GRCm39)	missense	probably damaging	1.00
R5375:Polq	UTSW	16	36,903,146 (GRCm39)	missense	probably damaging	1.00
R5480:Polq	UTSW	16	36,833,652 (GRCm39)	splice site	probably benign
R5552:Polq	UTSW	16	36,914,872 (GRCm39)	missense	possibly damaging	0.93
R5591:Polq	UTSW	16	36,832,247 (GRCm39)	utr 5 prime	probably benign
R5653:Polq	UTSW	16	36,860,896 (GRCm39)	missense	probably damaging	1.00
R5708:Polq	UTSW	16	36,881,380 (GRCm39)	missense	probably damaging	0.98
R5754:Polq	UTSW	16	36,837,625 (GRCm39)	missense	probably benign
R5757:Polq	UTSW	16	36,907,043 (GRCm39)	missense	probably benign	0.01
R5764:Polq	UTSW	16	36,837,706 (GRCm39)	missense	probably damaging	0.97
R6019:Polq	UTSW	16	36,882,126 (GRCm39)	missense	probably damaging	1.00
R6170:Polq	UTSW	16	36,866,174 (GRCm39)	missense	possibly damaging	0.82
R6177:Polq	UTSW	16	36,892,071 (GRCm39)	missense	probably damaging	0.98
R6307:Polq	UTSW	16	36,837,718 (GRCm39)	critical splice donor site	probably null
R6499:Polq	UTSW	16	36,881,189 (GRCm39)	missense	probably benign	0.03
R6520:Polq	UTSW	16	36,880,739 (GRCm39)	missense	possibly damaging	0.88
R6598:Polq	UTSW	16	36,881,993 (GRCm39)	missense	probably benign	0.39
R6694:Polq	UTSW	16	36,835,535 (GRCm39)	missense	probably null	0.99
R6788:Polq	UTSW	16	36,897,510 (GRCm39)	missense	probably damaging	1.00
R7104:Polq	UTSW	16	36,909,715 (GRCm39)	nonsense	probably null
R7159:Polq	UTSW	16	36,883,215 (GRCm39)	missense	possibly damaging	0.87
R7222:Polq	UTSW	16	36,906,995 (GRCm39)	nonsense	probably null
R7340:Polq	UTSW	16	36,881,288 (GRCm39)	missense	probably benign	0.00
R7361:Polq	UTSW	16	36,880,790 (GRCm39)	missense	probably benign	0.00
R7384:Polq	UTSW	16	36,849,780 (GRCm39)	missense	probably damaging	1.00
R7509:Polq	UTSW	16	36,880,706 (GRCm39)	missense	probably benign	0.00
R7509:Polq	UTSW	16	36,880,705 (GRCm39)	missense	probably benign
R7575:Polq	UTSW	16	36,911,496 (GRCm39)	missense	probably benign	0.00
R7785:Polq	UTSW	16	36,848,239 (GRCm39)	missense	probably damaging	1.00
R7787:Polq	UTSW	16	36,837,671 (GRCm39)	missense	probably damaging	1.00
R7891:Polq	UTSW	16	36,848,244 (GRCm39)	missense	probably damaging	1.00
R7898:Polq	UTSW	16	36,865,245 (GRCm39)	missense	probably damaging	0.98
R7917:Polq	UTSW	16	36,885,650 (GRCm39)	missense	probably benign	0.08
R7940:Polq	UTSW	16	36,881,004 (GRCm39)	missense	probably benign	0.27
R8028:Polq	UTSW	16	36,881,678 (GRCm39)	missense	possibly damaging	0.82
R8114:Polq	UTSW	16	36,862,577 (GRCm39)	missense	possibly damaging	0.94
R8144:Polq	UTSW	16	36,849,846 (GRCm39)	missense	probably benign	0.01
R8288:Polq	UTSW	16	36,848,272 (GRCm39)	missense	probably damaging	1.00
R8301:Polq	UTSW	16	36,882,181 (GRCm39)	missense	probably damaging	1.00
R8341:Polq	UTSW	16	36,892,133 (GRCm39)	missense	possibly damaging	0.96
R8348:Polq	UTSW	16	36,837,559 (GRCm39)	critical splice acceptor site	probably null
R8448:Polq	UTSW	16	36,837,559 (GRCm39)	critical splice acceptor site	probably null
R8815:Polq	UTSW	16	36,853,893 (GRCm39)	missense	probably damaging	1.00
R8843:Polq	UTSW	16	36,832,280 (GRCm39)	missense	unknown
R8878:Polq	UTSW	16	36,860,869 (GRCm39)	missense	probably benign	0.02
R9016:Polq	UTSW	16	36,843,159 (GRCm39)	missense	probably damaging	1.00
R9189:Polq	UTSW	16	36,865,265 (GRCm39)	missense	probably damaging	1.00
R9209:Polq	UTSW	16	36,869,011 (GRCm39)	missense	possibly damaging	0.94
R9352:Polq	UTSW	16	36,862,252 (GRCm39)	missense	probably damaging	0.98
R9398:Polq	UTSW	16	36,881,394 (GRCm39)	missense	probably benign	0.02
R9403:Polq	UTSW	16	36,882,215 (GRCm39)	missense	probably benign	0.00
R9489:Polq	UTSW	16	36,843,173 (GRCm39)	missense	probably benign	0.00
R9605:Polq	UTSW	16	36,843,173 (GRCm39)	missense	probably benign	0.00
R9664:Polq	UTSW	16	36,848,176 (GRCm39)	missense	probably damaging	0.98
R9801:Polq	UTSW	16	36,913,190 (GRCm39)	missense	probably damaging	1.00
X0060:Polq	UTSW	16	36,837,599 (GRCm39)	nonsense	probably null
Z1176:Polq	UTSW	16	36,862,619 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- ACCCTTGAGTTCTAGCACAC -3'
(R):5'- GTGTTGTTCACTTGCTCTGAAC -3'

Sequencing Primer
(F):5'- TTGAGTTCTAGCACACACTCACGG -3'
(R):5'- TCTCCGATGAGAAAGTTTGAAGAAC -3'

Posted On

2015-07-06