Mutagenetix > Incidental Mutation

Incidental Mutation 'R4423:Icosl'

327217

Institutional Source

Beutler Lab

Gene Symbol

Icosl

Ensembl Gene

ENSMUSG00000000732

Gene Name

icos ligand

Synonyms

GL50, B7h, GL50-B, ICOS-L, B7RP-1, LICOS, B7-H2

MMRRC Submission

041143-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.112) question?

Stock #

R4423 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

77904921-77915359 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 77907707 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 89 (T89I)

Ref Sequence

ENSEMBL: ENSMUSP00000101032 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000105393]

AlphaFold

Q9JHJ8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000105393
AA Change: T89I

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000101032
Gene: ENSMUSG00000000732
AA Change: T89I

Domain	Start	End	E-Value	Type
transmembrane domain	21	43	N/A	INTRINSIC
IG	47	161	4.67e-4	SMART
Pfam:C2-set_2	165	253	5.2e-9	PFAM
transmembrane domain	280	299	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000217675

Predicted Effect

unknown
Transcript: ENSMUST00000219038
AA Change: T85I

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219633

Meta Mutation Damage Score

0.5274

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.3%

Validation Efficiency

100% (57/57)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene exhibit defects in the humoral immune response associated with an impaired interactions between T and B cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017N19Rik	C	A	10: 100,441,495 (GRCm39)	P100Q	probably damaging	Het
A630010A05Rik	A	G	16: 14,436,577 (GRCm39)	Y210C	probably benign	Het
Arfgap1	C	A	2: 180,622,869 (GRCm39)	D327E	probably benign	Het
Arhgef9	T	G	X: 94,144,670 (GRCm39)	I131L	possibly damaging	Het
Asgr2	G	A	11: 69,996,211 (GRCm39)	V218I	probably benign	Het
Capns2	T	A	8: 93,628,252 (GRCm39)	I47N	possibly damaging	Het
Cep44	G	A	8: 56,991,652 (GRCm39)	P317S	probably benign	Het
Cfap144	A	T	11: 58,687,357 (GRCm39)		probably null	Het
Cnot10	T	A	9: 114,446,988 (GRCm39)	I363F	probably damaging	Het
Coch	T	A	12: 51,644,932 (GRCm39)		probably null	Het
Dnah1	C	T	14: 31,006,718 (GRCm39)	G2199D	probably benign	Het
Dock9	A	G	14: 121,799,465 (GRCm39)		probably null	Het
Dst	T	C	1: 34,227,474 (GRCm39)	I1689T	possibly damaging	Het
Eif2ak4	T	C	2: 118,269,547 (GRCm39)	F762S	probably benign	Het
Eif2b5	A	G	16: 20,320,469 (GRCm39)	D195G	probably benign	Het
Elmo1	C	G	13: 20,784,382 (GRCm39)	Y646*	probably null	Het
Far1	T	A	7: 113,139,805 (GRCm39)	S84R	probably damaging	Het
Fhod1	T	C	8: 106,063,983 (GRCm39)		probably benign	Het
Galnt15	A	T	14: 31,780,226 (GRCm39)	I508F	possibly damaging	Het
Grik1	T	C	16: 87,720,088 (GRCm39)	T745A	probably benign	Het
Hira	A	G	16: 18,774,952 (GRCm39)	D959G	possibly damaging	Het
Hsf5	T	C	11: 87,522,460 (GRCm39)	L351P	probably damaging	Het
Iws1	T	A	18: 32,216,503 (GRCm39)	N414K	probably damaging	Het
Kif1b	A	G	4: 149,298,562 (GRCm39)	S1035P	probably damaging	Het
Lcp2	G	T	11: 34,028,226 (GRCm39)		probably benign	Het
Map4	C	T	9: 109,896,662 (GRCm39)	T631I	probably damaging	Het
Nepn	T	A	10: 52,267,911 (GRCm39)	I59N	probably damaging	Het
Nin	T	A	12: 70,089,752 (GRCm39)	K1221M	probably damaging	Het
Nup155	A	G	15: 8,150,948 (GRCm39)	T333A	probably damaging	Het
Or10d4c	A	G	9: 39,558,412 (GRCm39)	Y130C	probably damaging	Het
Or52h9	T	C	7: 104,202,552 (GRCm39)	V142A	probably benign	Het
Or8b43	A	G	9: 38,360,662 (GRCm39)	T165A	probably benign	Het
Plod2	T	C	9: 92,484,042 (GRCm39)	L502S	probably benign	Het
Pnpt1	A	G	11: 29,103,375 (GRCm39)		probably null	Het
Ppat	A	G	5: 77,063,061 (GRCm39)	W517R	probably damaging	Het
Ppp1r16b	C	T	2: 158,599,174 (GRCm39)	T382I	probably benign	Het
Prkcq	T	C	2: 11,260,980 (GRCm39)	I344T	possibly damaging	Het
Rbl1	A	G	2: 157,010,875 (GRCm39)		probably benign	Het
Rpl31-ps17	C	T	12: 54,748,397 (GRCm39)		noncoding transcript	Het
Sec62	T	C	3: 30,868,431 (GRCm39)	M220T	unknown	Het
Shprh	T	G	10: 11,062,262 (GRCm39)	V1219G	possibly damaging	Het
Slc25a46	T	C	18: 31,742,651 (GRCm39)	T72A	probably benign	Het
Slc4a2	G	A	5: 24,644,846 (GRCm39)	W1040*	probably null	Het
Slc5a1	T	C	5: 33,312,018 (GRCm39)	V470A	possibly damaging	Het
Spmap2l	T	C	5: 77,202,383 (GRCm39)	I268T	possibly damaging	Het
Syvn1	C	T	19: 6,099,951 (GRCm39)		probably benign	Het
Tex47	G	T	5: 7,355,364 (GRCm39)	A182S	probably benign	Het
Top2a	A	G	11: 98,892,231 (GRCm39)	I1077T	probably benign	Het
Tpcn1	T	C	5: 120,680,583 (GRCm39)	K549R	probably damaging	Het
Trpm2	T	C	10: 77,770,902 (GRCm39)	D678G	probably benign	Het
Tut7	T	C	13: 59,969,863 (GRCm39)	K11E	probably damaging	Het
Ube3a	T	C	7: 58,925,861 (GRCm39)	I234T	probably benign	Het
Vmn2r57	T	C	7: 41,076,064 (GRCm39)	K483E	probably damaging	Het
Wnk1	T	A	6: 119,903,387 (GRCm39)	S2111C	probably damaging	Het

Other mutations in Icosl

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00980:Icosl	APN	10	77,907,805 (GRCm39)	missense	probably damaging	1.00
IGL02540:Icosl	APN	10	77,905,370 (GRCm39)	critical splice donor site	probably null
R0304:Icosl	UTSW	10	77,911,156 (GRCm39)	missense	probably benign
R0512:Icosl	UTSW	10	77,907,800 (GRCm39)	missense	possibly damaging	0.77
R0584:Icosl	UTSW	10	77,907,709 (GRCm39)	missense	possibly damaging	0.82
R0711:Icosl	UTSW	10	77,909,775 (GRCm39)	missense	probably damaging	1.00
R2005:Icosl	UTSW	10	77,907,787 (GRCm39)	missense	possibly damaging	0.63
R2006:Icosl	UTSW	10	77,907,787 (GRCm39)	missense	possibly damaging	0.63
R2189:Icosl	UTSW	10	77,909,759 (GRCm39)	missense	possibly damaging	0.62
R3417:Icosl	UTSW	10	77,907,869 (GRCm39)	missense	possibly damaging	0.46
R5183:Icosl	UTSW	10	77,905,319 (GRCm39)	unclassified	probably benign
R5579:Icosl	UTSW	10	77,909,597 (GRCm39)	missense	probably damaging	0.99
R6388:Icosl	UTSW	10	77,905,366 (GRCm39)	missense	possibly damaging	0.96
R7336:Icosl	UTSW	10	77,909,707 (GRCm39)	nonsense	probably null
R7921:Icosl	UTSW	10	77,909,786 (GRCm39)	missense	probably benign	0.02
R7921:Icosl	UTSW	10	77,909,574 (GRCm39)	missense	probably benign	0.01
R8733:Icosl	UTSW	10	77,909,697 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCACCTCACACCTGAGTTTG -3'
(R):5'- GGCTGTATTCATAAATACCCGGC -3'

Sequencing Primer
(F):5'- TCACACCTGAGTTTGCTACAAG -3'
(R):5'- GCATGTGAACTCCTGGGTATCC -3'

Posted On

2015-07-07