Incidental Mutation 'R4489:Or4c116'
| ID |
330619 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or4c116
|
| Ensembl Gene |
ENSMUSG00000075102 |
| Gene Name |
olfactory receptor family 4 subfamily C member 116 |
| Synonyms |
Olfr1221, MOR233-3, GA_x6K02T2Q125-50591144-50590209 |
| MMRRC Submission |
041745-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.099)
|
| Stock # |
R4489 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
2 |
| Chromosomal Location |
88941919-88942854 bp(-) (GRCm39) |
| Type of Mutation |
splice site (3 bp from exon) |
| DNA Base Change (assembly) |
T to C
at 88941916 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000097383
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000099795]
[ENSMUST00000099795]
[ENSMUST00000099806]
[ENSMUST00000143255]
[ENSMUST00000213288]
[ENSMUST00000213404]
[ENSMUST00000217635]
|
| AlphaFold |
L7MU53 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000099795
|
| SMART Domains |
Protein: ENSMUSP00000097383
Gene: ENSMUSG00000075102
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
303 |
5.6e-48 |
PFAM |
|
Pfam:7tm_1
|
39 |
302 |
3.6e-16 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000099795
|
| SMART Domains |
Protein: ENSMUSP00000097383
Gene: ENSMUSG00000075102
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
303 |
5.6e-48 |
PFAM |
|
Pfam:7tm_1
|
39 |
302 |
3.6e-16 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000099806
|
| SMART Domains |
Protein: ENSMUSP00000097394
Gene: ENSMUSG00000101480
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
303 |
2.5e-47 |
PFAM |
|
Pfam:7tm_1
|
39 |
286 |
3.2e-17 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000143255
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000213288
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000213404
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000217635
|
| Meta Mutation Damage Score |
0.9755 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 95.0%
|
| Validation Efficiency |
94% (50/53) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 44 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcd2 |
A |
G |
15: 91,062,486 (GRCm39) |
V484A |
probably damaging |
Het |
| Ank3 |
C |
T |
10: 69,734,086 (GRCm39) |
A754V |
probably damaging |
Het |
| Ano1 |
T |
C |
7: 144,165,479 (GRCm39) |
N582S |
probably benign |
Het |
| Arnt2 |
T |
A |
7: 83,924,553 (GRCm39) |
T425S |
probably benign |
Het |
| Bltp1 |
A |
T |
3: 37,058,082 (GRCm39) |
Q3224L |
probably null |
Het |
| Cand2 |
A |
G |
6: 115,766,427 (GRCm39) |
D344G |
probably damaging |
Het |
| Clta |
T |
G |
4: 44,032,417 (GRCm39) |
F198V |
probably damaging |
Het |
| Cnga2 |
T |
A |
X: 71,049,733 (GRCm39) |
F133I |
possibly damaging |
Het |
| Csmd2 |
G |
A |
4: 128,275,738 (GRCm39) |
V826M |
possibly damaging |
Het |
| Dnah11 |
C |
T |
12: 117,880,631 (GRCm39) |
V3830I |
probably benign |
Het |
| Fhl4 |
T |
C |
10: 84,934,319 (GRCm39) |
D154G |
possibly damaging |
Het |
| Gbp4 |
T |
A |
5: 105,269,773 (GRCm39) |
T352S |
probably damaging |
Het |
| Gigyf2 |
A |
G |
1: 87,368,548 (GRCm39) |
D1076G |
probably damaging |
Het |
| Gm21370 |
T |
A |
13: 120,488,378 (GRCm39) |
Y57F |
probably benign |
Het |
| Gm6489 |
A |
G |
1: 31,326,320 (GRCm39) |
|
noncoding transcript |
Het |
| Grm6 |
T |
C |
11: 50,750,816 (GRCm39) |
S660P |
probably damaging |
Het |
| Hectd4 |
T |
G |
5: 121,424,320 (GRCm39) |
I660R |
possibly damaging |
Het |
| Homer3 |
G |
A |
8: 70,742,793 (GRCm39) |
|
probably null |
Het |
| Htr1b |
A |
T |
9: 81,513,592 (GRCm39) |
D338E |
probably benign |
Het |
| Kifbp |
A |
G |
10: 62,398,806 (GRCm39) |
|
probably benign |
Het |
| Lrp1b |
T |
C |
2: 40,551,501 (GRCm39) |
|
probably benign |
Het |
| Lzts1 |
T |
A |
8: 69,588,347 (GRCm39) |
K536N |
possibly damaging |
Het |
| Mrpl22 |
T |
A |
11: 58,063,928 (GRCm39) |
N49K |
probably benign |
Het |
| Mzt1 |
T |
C |
14: 99,273,926 (GRCm39) |
*42W |
probably null |
Het |
| Nkx3-2 |
T |
G |
5: 41,919,304 (GRCm39) |
Q228P |
probably damaging |
Het |
| Nufip2 |
T |
G |
11: 77,577,055 (GRCm39) |
M1R |
probably null |
Het |
| Obscn |
G |
A |
11: 58,922,417 (GRCm39) |
T5921M |
possibly damaging |
Het |
| Or52e7 |
T |
C |
7: 104,684,510 (GRCm39) |
F35S |
probably benign |
Het |
| Pcdha11 |
C |
A |
18: 37,139,969 (GRCm39) |
Q533K |
possibly damaging |
Het |
| Pgm5 |
T |
C |
19: 24,793,809 (GRCm39) |
E285G |
probably benign |
Het |
| Plxna2 |
C |
T |
1: 194,431,625 (GRCm39) |
S538F |
probably damaging |
Het |
| Potefam1 |
A |
G |
2: 111,051,047 (GRCm39) |
Y250H |
probably benign |
Het |
| Rgs21 |
T |
C |
1: 144,395,613 (GRCm39) |
T92A |
possibly damaging |
Het |
| Rgsl1 |
T |
A |
1: 153,703,282 (GRCm39) |
Y123F |
probably benign |
Het |
| Rnf13 |
A |
C |
3: 57,728,010 (GRCm39) |
K230T |
probably damaging |
Het |
| Sgf29 |
T |
C |
7: 126,263,110 (GRCm39) |
S29P |
possibly damaging |
Het |
| Smchd1 |
T |
C |
17: 71,714,230 (GRCm39) |
T878A |
probably benign |
Het |
| Specc1 |
T |
G |
11: 62,042,653 (GRCm39) |
|
probably null |
Het |
| Tg |
A |
T |
15: 66,579,791 (GRCm39) |
Q1532L |
probably damaging |
Het |
| Timm44 |
A |
C |
8: 4,316,654 (GRCm39) |
S297A |
possibly damaging |
Het |
| Txndc9 |
G |
T |
1: 38,034,871 (GRCm39) |
S11* |
probably null |
Het |
| Uggt1 |
C |
T |
1: 36,185,749 (GRCm39) |
W1478* |
probably null |
Het |
| Washc3 |
T |
C |
10: 88,051,893 (GRCm39) |
V87A |
probably benign |
Het |
| Xlr5b |
T |
C |
X: 72,201,504 (GRCm39) |
|
probably null |
Het |
|
| Other mutations in Or4c116 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01074:Or4c116
|
APN |
2 |
88,942,023 (GRCm39) |
missense |
probably benign |
0.19 |
|
IGL01965:Or4c116
|
APN |
2 |
88,942,535 (GRCm39) |
missense |
probably benign |
0.37 |
|
IGL02645:Or4c116
|
APN |
2 |
88,941,963 (GRCm39) |
missense |
probably benign |
0.00 |
|
G1patch:Or4c116
|
UTSW |
2 |
88,942,640 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
PIT4354001:Or4c116
|
UTSW |
2 |
88,942,830 (GRCm39) |
nonsense |
probably null |
|
|
R0124:Or4c116
|
UTSW |
2 |
88,942,088 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R0940:Or4c116
|
UTSW |
2 |
88,942,419 (GRCm39) |
missense |
probably benign |
|
|
R3689:Or4c116
|
UTSW |
2 |
88,942,386 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R4706:Or4c116
|
UTSW |
2 |
88,942,576 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4707:Or4c116
|
UTSW |
2 |
88,942,576 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5133:Or4c116
|
UTSW |
2 |
88,942,140 (GRCm39) |
splice site |
probably null |
|
|
R6629:Or4c116
|
UTSW |
2 |
88,942,506 (GRCm39) |
missense |
probably benign |
0.09 |
|
R6644:Or4c116
|
UTSW |
2 |
88,942,325 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6723:Or4c116
|
UTSW |
2 |
88,942,640 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R6725:Or4c116
|
UTSW |
2 |
88,942,640 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R6754:Or4c116
|
UTSW |
2 |
88,942,640 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R6765:Or4c116
|
UTSW |
2 |
88,942,640 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R6766:Or4c116
|
UTSW |
2 |
88,942,640 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R7215:Or4c116
|
UTSW |
2 |
88,942,845 (GRCm39) |
nonsense |
probably null |
|
|
R7562:Or4c116
|
UTSW |
2 |
88,942,629 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7681:Or4c116
|
UTSW |
2 |
88,941,935 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7981:Or4c116
|
UTSW |
2 |
88,942,400 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8318:Or4c116
|
UTSW |
2 |
88,942,242 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8425:Or4c116
|
UTSW |
2 |
88,942,737 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8788:Or4c116
|
UTSW |
2 |
88,942,626 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Predicted Primers |
PCR Primer
(F):5'- CATTGAATTTGCAGTTTGTCAAGCC -3'
(R):5'- TGGGTCCCATATTACAGTCGTTG -3'
Sequencing Primer
(F):5'- GCAGTTTGTCAAGCCTATTAGATTG -3'
(R):5'- ACAGTCGTTGTTTTATTCTTTGTTC -3'
|
| Posted On |
2015-07-21 |
Incidental Mutation