Incidental Mutation 'R4489:Kifbp'
| ID |
330639 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Kifbp
|
| Ensembl Gene |
ENSMUSG00000036955 |
| Gene Name |
kinesin family binding protein |
| Synonyms |
2510003E04Rik, Kif1bp |
| MMRRC Submission |
041745-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R4489 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
10 |
| Chromosomal Location |
62394249-62414846 bp(-) (GRCm39) |
| Type of Mutation |
intron |
| DNA Base Change (assembly) |
A to G
at 62398806 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000125236
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000065887]
[ENSMUST00000159704]
[ENSMUST00000162525]
[ENSMUST00000162648]
[ENSMUST00000162759]
|
| AlphaFold |
Q6ZPU9 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000065887
|
| SMART Domains |
Protein: ENSMUSP00000065160
Gene: ENSMUSG00000036955
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
39 |
84 |
N/A |
INTRINSIC |
|
Blast:TPR
|
204 |
235 |
1e-5 |
BLAST |
|
Pfam:KBP_C
|
243 |
610 |
6.6e-124 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000159704
|
| SMART Domains |
Protein: ENSMUSP00000134770
Gene: ENSMUSG00000036955
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
39 |
84 |
N/A |
INTRINSIC |
|
Blast:TPR
|
204 |
235 |
1e-5 |
BLAST |
|
Pfam:KBP_C
|
242 |
383 |
2.7e-36 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160228
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000162263
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000162525
|
| SMART Domains |
Protein: ENSMUSP00000125162
Gene: ENSMUSG00000036955
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
39 |
84 |
N/A |
INTRINSIC |
|
Blast:TPR
|
204 |
235 |
6e-6 |
BLAST |
|
Pfam:KBP_C
|
242 |
293 |
5.7e-18 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000162648
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000162759
|
| SMART Domains |
Protein: ENSMUSP00000125236
Gene: ENSMUSG00000036955
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
39 |
84 |
N/A |
INTRINSIC |
|
Blast:TPR
|
204 |
235 |
1e-5 |
BLAST |
|
Pfam:KBP_C
|
242 |
329 |
4.8e-28 |
PFAM |
|
transmembrane domain
|
340 |
362 |
N/A |
INTRINSIC |
|
transmembrane domain
|
375 |
397 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000208223
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 95.0%
|
| Validation Efficiency |
94% (50/53) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a kinesin family member 1 binding protein that is characterized by two tetratrico peptide repeats. The encoded protein localizes to the mitochondria and may be involved in regulating transport of the mitochondria. Mutations in this gene are associated with Goldberg-Shprintzen megacolon syndrome. [provided by RefSeq, Mar 2010]
PHENOTYPE: Homozygous KO mice die shortly after birth from respiratory failure. Knockout affects innervation of the digestive tract, and the development of the olfactory bulb and the anterior commissure in the brain. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 44 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcd2 |
A |
G |
15: 91,062,486 (GRCm39) |
V484A |
probably damaging |
Het |
| Ank3 |
C |
T |
10: 69,734,086 (GRCm39) |
A754V |
probably damaging |
Het |
| Ano1 |
T |
C |
7: 144,165,479 (GRCm39) |
N582S |
probably benign |
Het |
| Arnt2 |
T |
A |
7: 83,924,553 (GRCm39) |
T425S |
probably benign |
Het |
| Bltp1 |
A |
T |
3: 37,058,082 (GRCm39) |
Q3224L |
probably null |
Het |
| Cand2 |
A |
G |
6: 115,766,427 (GRCm39) |
D344G |
probably damaging |
Het |
| Clta |
T |
G |
4: 44,032,417 (GRCm39) |
F198V |
probably damaging |
Het |
| Cnga2 |
T |
A |
X: 71,049,733 (GRCm39) |
F133I |
possibly damaging |
Het |
| Csmd2 |
G |
A |
4: 128,275,738 (GRCm39) |
V826M |
possibly damaging |
Het |
| Dnah11 |
C |
T |
12: 117,880,631 (GRCm39) |
V3830I |
probably benign |
Het |
| Fhl4 |
T |
C |
10: 84,934,319 (GRCm39) |
D154G |
possibly damaging |
Het |
| Gbp4 |
T |
A |
5: 105,269,773 (GRCm39) |
T352S |
probably damaging |
Het |
| Gigyf2 |
A |
G |
1: 87,368,548 (GRCm39) |
D1076G |
probably damaging |
Het |
| Gm21370 |
T |
A |
13: 120,488,378 (GRCm39) |
Y57F |
probably benign |
Het |
| Gm6489 |
A |
G |
1: 31,326,320 (GRCm39) |
|
noncoding transcript |
Het |
| Grm6 |
T |
C |
11: 50,750,816 (GRCm39) |
S660P |
probably damaging |
Het |
| Hectd4 |
T |
G |
5: 121,424,320 (GRCm39) |
I660R |
possibly damaging |
Het |
| Homer3 |
G |
A |
8: 70,742,793 (GRCm39) |
|
probably null |
Het |
| Htr1b |
A |
T |
9: 81,513,592 (GRCm39) |
D338E |
probably benign |
Het |
| Lrp1b |
T |
C |
2: 40,551,501 (GRCm39) |
|
probably benign |
Het |
| Lzts1 |
T |
A |
8: 69,588,347 (GRCm39) |
K536N |
possibly damaging |
Het |
| Mrpl22 |
T |
A |
11: 58,063,928 (GRCm39) |
N49K |
probably benign |
Het |
| Mzt1 |
T |
C |
14: 99,273,926 (GRCm39) |
*42W |
probably null |
Het |
| Nkx3-2 |
T |
G |
5: 41,919,304 (GRCm39) |
Q228P |
probably damaging |
Het |
| Nufip2 |
T |
G |
11: 77,577,055 (GRCm39) |
M1R |
probably null |
Het |
| Obscn |
G |
A |
11: 58,922,417 (GRCm39) |
T5921M |
possibly damaging |
Het |
| Or4c116 |
T |
C |
2: 88,941,916 (GRCm39) |
|
probably null |
Het |
| Or52e7 |
T |
C |
7: 104,684,510 (GRCm39) |
F35S |
probably benign |
Het |
| Pcdha11 |
C |
A |
18: 37,139,969 (GRCm39) |
Q533K |
possibly damaging |
Het |
| Pgm5 |
T |
C |
19: 24,793,809 (GRCm39) |
E285G |
probably benign |
Het |
| Plxna2 |
C |
T |
1: 194,431,625 (GRCm39) |
S538F |
probably damaging |
Het |
| Potefam1 |
A |
G |
2: 111,051,047 (GRCm39) |
Y250H |
probably benign |
Het |
| Rgs21 |
T |
C |
1: 144,395,613 (GRCm39) |
T92A |
possibly damaging |
Het |
| Rgsl1 |
T |
A |
1: 153,703,282 (GRCm39) |
Y123F |
probably benign |
Het |
| Rnf13 |
A |
C |
3: 57,728,010 (GRCm39) |
K230T |
probably damaging |
Het |
| Sgf29 |
T |
C |
7: 126,263,110 (GRCm39) |
S29P |
possibly damaging |
Het |
| Smchd1 |
T |
C |
17: 71,714,230 (GRCm39) |
T878A |
probably benign |
Het |
| Specc1 |
T |
G |
11: 62,042,653 (GRCm39) |
|
probably null |
Het |
| Tg |
A |
T |
15: 66,579,791 (GRCm39) |
Q1532L |
probably damaging |
Het |
| Timm44 |
A |
C |
8: 4,316,654 (GRCm39) |
S297A |
possibly damaging |
Het |
| Txndc9 |
G |
T |
1: 38,034,871 (GRCm39) |
S11* |
probably null |
Het |
| Uggt1 |
C |
T |
1: 36,185,749 (GRCm39) |
W1478* |
probably null |
Het |
| Washc3 |
T |
C |
10: 88,051,893 (GRCm39) |
V87A |
probably benign |
Het |
| Xlr5b |
T |
C |
X: 72,201,504 (GRCm39) |
|
probably null |
Het |
|
| Other mutations in Kifbp |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00566:Kifbp
|
APN |
10 |
62,395,118 (GRCm39) |
nonsense |
probably null |
|
|
IGL02127:Kifbp
|
APN |
10 |
62,414,128 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL03304:Kifbp
|
APN |
10 |
62,395,082 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02980:Kifbp
|
UTSW |
10 |
62,394,947 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0317:Kifbp
|
UTSW |
10 |
62,413,861 (GRCm39) |
splice site |
probably null |
|
|
R0408:Kifbp
|
UTSW |
10 |
62,401,832 (GRCm39) |
missense |
probably benign |
0.37 |
|
R0462:Kifbp
|
UTSW |
10 |
62,395,235 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1469:Kifbp
|
UTSW |
10 |
62,395,229 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R1469:Kifbp
|
UTSW |
10 |
62,395,229 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R1503:Kifbp
|
UTSW |
10 |
62,395,187 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1830:Kifbp
|
UTSW |
10 |
62,395,106 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3848:Kifbp
|
UTSW |
10 |
62,405,249 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4486:Kifbp
|
UTSW |
10 |
62,398,806 (GRCm39) |
intron |
probably benign |
|
|
R4488:Kifbp
|
UTSW |
10 |
62,398,806 (GRCm39) |
intron |
probably benign |
|
|
R5137:Kifbp
|
UTSW |
10 |
62,414,020 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5193:Kifbp
|
UTSW |
10 |
62,395,175 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5212:Kifbp
|
UTSW |
10 |
62,398,908 (GRCm39) |
intron |
probably benign |
|
|
R5929:Kifbp
|
UTSW |
10 |
62,395,181 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6179:Kifbp
|
UTSW |
10 |
62,399,029 (GRCm39) |
nonsense |
probably null |
|
|
R6488:Kifbp
|
UTSW |
10 |
62,395,437 (GRCm39) |
splice site |
probably null |
|
|
R6513:Kifbp
|
UTSW |
10 |
62,410,813 (GRCm39) |
splice site |
probably null |
|
|
R6808:Kifbp
|
UTSW |
10 |
62,410,923 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R6900:Kifbp
|
UTSW |
10 |
62,394,908 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6916:Kifbp
|
UTSW |
10 |
62,401,843 (GRCm39) |
missense |
probably benign |
0.05 |
|
R7092:Kifbp
|
UTSW |
10 |
62,414,079 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7289:Kifbp
|
UTSW |
10 |
62,401,895 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7376:Kifbp
|
UTSW |
10 |
62,394,843 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R7672:Kifbp
|
UTSW |
10 |
62,413,852 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8134:Kifbp
|
UTSW |
10 |
62,413,756 (GRCm39) |
missense |
probably benign |
|
|
R8809:Kifbp
|
UTSW |
10 |
62,395,491 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R8899:Kifbp
|
UTSW |
10 |
62,399,282 (GRCm39) |
intron |
probably benign |
|
|
R9094:Kifbp
|
UTSW |
10 |
62,395,037 (GRCm39) |
missense |
probably damaging |
0.98 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCGGCTTAGACTACAGAGAGAC -3'
(R):5'- CTCATCATCAGGCCCACTATGTG -3'
Sequencing Primer
(F):5'- TCCATCAGGAAAGTGCCAG -3'
(R):5'- ATCAGGCCCACTATGTGTTTTG -3'
|
| Posted On |
2015-07-21 |
Incidental Mutation