Incidental Mutation 'R4493:Rtp4'
ID 330845
Institutional Source Beutler Lab
Gene Symbol Rtp4
Ensembl Gene ENSMUSG00000033355
Gene Name receptor transporter protein 4
Synonyms 5830458K16Rik
MMRRC Submission 041748-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.086) question?
Stock # R4493 (G1)
Quality Score 225
Status Validated
Chromosome 16
Chromosomal Location 23339041-23432972 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 23428827 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Leucine at position 30 (H30L)
Ref Sequence ENSEMBL: ENSMUSP00000148086 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038423] [ENSMUST00000209422] [ENSMUST00000210901] [ENSMUST00000211349] [ENSMUST00000211569]
AlphaFold Q9ER80
Predicted Effect probably benign
Transcript: ENSMUST00000038423
AA Change: H30L

PolyPhen 2 Score 0.215 (Sensitivity: 0.92; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000041091
Gene: ENSMUSG00000033355
AA Change: H30L

DomainStartEndE-ValueType
zf-3CxxC 50 163 8.52e-52 SMART
low complexity region 175 197 N/A INTRINSIC
transmembrane domain 231 248 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000209422
AA Change: H30L

PolyPhen 2 Score 0.215 (Sensitivity: 0.92; Specificity: 0.88)
Predicted Effect probably benign
Transcript: ENSMUST00000210901
AA Change: H30L

PolyPhen 2 Score 0.215 (Sensitivity: 0.92; Specificity: 0.88)
Predicted Effect probably benign
Transcript: ENSMUST00000211349
AA Change: H30L

PolyPhen 2 Score 0.228 (Sensitivity: 0.91; Specificity: 0.88)
Predicted Effect probably benign
Transcript: ENSMUST00000211569
AA Change: H30L

PolyPhen 2 Score 0.215 (Sensitivity: 0.92; Specificity: 0.88)
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.7%
Validation Efficiency 94% (45/48)
Allele List at MGI
Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Cacna1b T C 2: 24,542,950 (GRCm39) T1301A probably damaging Het
Ccdc141 A G 2: 76,962,641 (GRCm39) V101A probably damaging Het
Ccdc146 T C 5: 21,508,191 (GRCm39) E619G possibly damaging Het
Cfap91 T C 16: 38,162,130 (GRCm39) T4A probably benign Het
Cmya5 T C 13: 93,230,573 (GRCm39) E1505G probably benign Het
Cngb3 C A 4: 19,367,778 (GRCm39) P229Q probably damaging Het
Ctnna2 A G 6: 76,958,831 (GRCm39) V461A probably damaging Het
D430041D05Rik T C 2: 104,086,684 (GRCm39) D764G probably benign Het
Dgki T C 6: 36,951,796 (GRCm39) probably benign Het
Dhx36 A T 3: 62,395,925 (GRCm39) probably benign Het
Gcn1 T C 5: 115,732,203 (GRCm39) I1006T probably benign Het
Glt8d2 T A 10: 82,500,547 (GRCm39) M20L possibly damaging Het
Greb1 C A 12: 16,748,611 (GRCm39) G1122V probably benign Het
Hmcn1 A T 1: 150,577,650 (GRCm39) I2037N probably damaging Het
Hspa4l A G 3: 40,722,434 (GRCm39) I340V possibly damaging Het
Itpr3 A G 17: 27,323,586 (GRCm39) K1204E probably damaging Het
Kcnh8 GAGACCAACGAGCAGCTGATGCTTCAGA GAGA 17: 53,032,934 (GRCm39) 74 probably benign Het
Lyst G A 13: 13,809,968 (GRCm39) R546H probably damaging Het
Mcph1 T A 8: 18,681,752 (GRCm39) C296* probably null Het
Mrc2 G A 11: 105,239,257 (GRCm39) probably null Het
Naga A G 15: 82,216,715 (GRCm39) F259S probably damaging Het
Nes A G 3: 87,884,120 (GRCm39) E793G probably damaging Het
Nfkb2 A G 19: 46,296,878 (GRCm39) D316G probably damaging Het
Pcdha4 A T 18: 37,087,644 (GRCm39) Y609F possibly damaging Het
Pgam1 C T 19: 41,904,215 (GRCm39) A104V possibly damaging Het
Piezo2 T C 18: 63,247,134 (GRCm39) I525V probably damaging Het
Pold1 A G 7: 44,187,132 (GRCm39) V683A probably damaging Het
Poteg T C 8: 27,970,125 (GRCm39) V316A possibly damaging Het
Ppih A T 4: 119,168,042 (GRCm39) N156K probably damaging Het
Prep T C 10: 44,996,915 (GRCm39) F398L probably benign Het
Prlhr A T 19: 60,455,519 (GRCm39) M349K probably benign Het
Stkld1 A G 2: 26,836,638 (GRCm39) N268S probably benign Het
Syt6 A G 3: 103,492,946 (GRCm39) E66G probably damaging Het
Tas2r129 A G 6: 132,928,317 (GRCm39) I85V probably benign Het
Tma16 C T 8: 66,936,823 (GRCm39) probably null Het
Tprn T C 2: 25,158,904 (GRCm39) S643P probably damaging Het
Trrap T C 5: 144,767,858 (GRCm39) V2605A probably benign Het
Vmn1r230 T A 17: 21,066,863 (GRCm39) N17K probably benign Het
Xkrx T C X: 133,051,745 (GRCm39) N302S possibly damaging Het
Zfp946 T A 17: 22,670,067 (GRCm39) probably null Het
Other mutations in Rtp4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01606:Rtp4 APN 16 23,432,004 (GRCm39) missense probably benign 0.18
IGL02942:Rtp4 APN 16 23,431,704 (GRCm39) missense probably benign 0.01
PIT4696001:Rtp4 UTSW 16 23,432,204 (GRCm39) missense probably benign 0.23
R0049:Rtp4 UTSW 16 23,431,679 (GRCm39) missense probably benign 0.04
R0049:Rtp4 UTSW 16 23,431,679 (GRCm39) missense probably benign 0.04
R1694:Rtp4 UTSW 16 23,431,870 (GRCm39) makesense probably null
R2060:Rtp4 UTSW 16 23,431,690 (GRCm39) missense probably damaging 1.00
R2088:Rtp4 UTSW 16 23,431,963 (GRCm39) missense possibly damaging 0.86
R4232:Rtp4 UTSW 16 23,431,833 (GRCm39) missense possibly damaging 0.58
R4646:Rtp4 UTSW 16 23,428,790 (GRCm39) missense probably benign 0.20
R8315:Rtp4 UTSW 16 23,431,998 (GRCm39) missense possibly damaging 0.93
R8399:Rtp4 UTSW 16 23,339,164 (GRCm39) intron probably benign
R8470:Rtp4 UTSW 16 23,428,827 (GRCm39) missense probably benign 0.23
R8743:Rtp4 UTSW 16 23,431,866 (GRCm39) missense possibly damaging 0.91
R9444:Rtp4 UTSW 16 23,431,836 (GRCm39) missense probably benign 0.18
R9607:Rtp4 UTSW 16 23,339,226 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- GCCCTAAGGTTTCTGTGCAC -3'
(R):5'- AATCTAGTTAGCCACACCTGTTC -3'

Sequencing Primer
(F):5'- CTAAGGTTTCTGTGCACCTTGGAAAC -3'
(R):5'- AGCCACACCTGTTCTTTCTAACAAG -3'
Posted On 2015-07-21