Incidental Mutation 'IGL00465:Stx6'
ID 332160
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Stx6
Ensembl Gene ENSMUSG00000026470
Gene Name syntaxin 6
Synonyms 2310039E05Rik, 2410005I16Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.167) question?
Stock # IGL00465
Quality Score
Status
Chromosome 1
Chromosomal Location 155034374-155083405 bp(+) (GRCm39)
Type of Mutation unclassified
DNA Base Change (assembly) C to T at 155077679 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000142089 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027743] [ENSMUST00000193059] [ENSMUST00000195302]
AlphaFold Q9JKK1
Predicted Effect probably benign
Transcript: ENSMUST00000027743
SMART Domains Protein: ENSMUSP00000027743
Gene: ENSMUSG00000026470

DomainStartEndE-ValueType
Pfam:Syntaxin-6_N 5 103 1.9e-41 PFAM
t_SNARE 158 225 3.77e-15 SMART
transmembrane domain 235 254 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000192690
Predicted Effect probably benign
Transcript: ENSMUST00000193059
SMART Domains Protein: ENSMUSP00000141976
Gene: ENSMUSG00000026470

DomainStartEndE-ValueType
Pfam:Syntaxin-6_N 5 103 4.2e-32 PFAM
low complexity region 156 175 N/A INTRINSIC
Blast:t_SNARE 176 199 5e-7 BLAST
PDB:2NPS|D 176 199 4e-8 PDB
Predicted Effect noncoding transcript
Transcript: ENSMUST00000194158
Predicted Effect probably benign
Transcript: ENSMUST00000195302
SMART Domains Protein: ENSMUSP00000142089
Gene: ENSMUSG00000026470

DomainStartEndE-ValueType
Pfam:Syntaxin-6_N 5 103 5.1e-35 PFAM
t_SNARE 158 225 3.77e-15 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000195693
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 49 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A1bg A T 15: 60,793,102 (GRCm39) S2T probably damaging Het
Adamts13 T A 2: 26,863,567 (GRCm39) W7R probably benign Het
Anks6 T A 4: 47,046,054 (GRCm39) D279V probably damaging Het
C4bp A T 1: 130,566,871 (GRCm39) L335Q probably damaging Het
Cd109 A T 9: 78,568,216 (GRCm39) K299* probably null Het
Cd200r2 A T 16: 44,729,651 (GRCm39) H102L probably damaging Het
Col12a1 A G 9: 79,604,863 (GRCm39) Y662H probably damaging Het
Cyp2c37 T C 19: 39,990,441 (GRCm39) F380L probably benign Het
Deup1 A G 9: 15,472,666 (GRCm39) S549P probably damaging Het
Dysf G T 6: 84,176,830 (GRCm39) probably null Het
Etaa1 A T 11: 17,897,825 (GRCm39) C166* probably null Het
Fam227b T C 2: 125,986,245 (GRCm39) probably null Het
Gucy1b2 T G 14: 62,640,649 (GRCm39) Q752P probably benign Het
Hal T C 10: 93,325,931 (GRCm39) probably null Het
Hao1 C A 2: 134,396,190 (GRCm39) K21N probably damaging Het
Itga4 T C 2: 79,122,394 (GRCm39) F536L probably benign Het
Lmod3 A T 6: 97,224,822 (GRCm39) I333N probably damaging Het
Mgme1 T A 2: 144,121,436 (GRCm39) D297E probably damaging Het
Myh2 G T 11: 67,069,659 (GRCm39) probably benign Het
Myo7a A G 7: 97,751,833 (GRCm39) M70T probably damaging Het
Nav3 T C 10: 109,688,607 (GRCm39) T557A probably damaging Het
Nif3l1 C A 1: 58,494,845 (GRCm39) H271Q possibly damaging Het
Nostrin A G 2: 69,015,898 (GRCm39) probably benign Het
Nxn C A 11: 76,165,481 (GRCm39) probably benign Het
Pcdhb22 A T 18: 37,653,185 (GRCm39) D551V probably damaging Het
Pde4d A G 13: 110,073,221 (GRCm39) D339G possibly damaging Het
Pkp4 T A 2: 59,169,099 (GRCm39) S408T probably damaging Het
Pxmp2 T C 5: 110,431,582 (GRCm39) T54A probably benign Het
Rif1 T A 2: 52,011,019 (GRCm39) V2362E probably damaging Het
Rps6kl1 A G 12: 85,186,203 (GRCm39) S276P probably benign Het
Scaf4 C A 16: 90,044,169 (GRCm39) M601I unknown Het
Scart2 A G 7: 139,874,755 (GRCm39) Y411C probably damaging Het
Setd7 T A 3: 51,457,729 (GRCm39) T33S probably benign Het
Shroom1 T A 11: 53,354,921 (GRCm39) D280E probably benign Het
Slc35f2 G T 9: 53,705,298 (GRCm39) probably null Het
Slitrk3 T A 3: 72,958,436 (GRCm39) N112I probably damaging Het
Spag1 A G 15: 36,183,967 (GRCm39) probably benign Het
Sun1 A T 5: 139,220,440 (GRCm39) probably null Het
Tbl1xr1 G A 3: 22,246,432 (GRCm39) probably null Het
Tmc2 T C 2: 130,103,224 (GRCm39) S787P possibly damaging Het
Traf3ip3 C T 1: 192,877,128 (GRCm39) probably benign Het
Trip12 T G 1: 84,741,582 (GRCm39) H559P probably damaging Het
Trpm1 G T 7: 63,897,215 (GRCm39) M272I possibly damaging Het
Ttc21b T C 2: 66,073,119 (GRCm39) E189G probably benign Het
Tubd1 T C 11: 86,445,894 (GRCm39) probably benign Het
Vps13a T A 19: 16,729,539 (GRCm39) T167S probably damaging Het
Zbtb3 A G 19: 8,781,029 (GRCm39) D214G possibly damaging Het
Zfp658 A G 7: 43,216,780 (GRCm39) D50G probably benign Het
Zfp976 T A 7: 42,263,109 (GRCm39) I243L unknown Het
Other mutations in Stx6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01414:Stx6 APN 1 155,077,691 (GRCm39) missense possibly damaging 0.85
IGL02376:Stx6 APN 1 155,077,725 (GRCm39) missense probably benign 0.39
IGL02415:Stx6 APN 1 155,069,059 (GRCm39) missense possibly damaging 0.68
R0276:Stx6 UTSW 1 155,049,909 (GRCm39) splice site probably benign
R0709:Stx6 UTSW 1 155,069,040 (GRCm39) missense probably damaging 1.00
R1218:Stx6 UTSW 1 155,077,737 (GRCm39) missense probably benign 0.39
R1484:Stx6 UTSW 1 155,053,650 (GRCm39) missense probably benign 0.05
R2366:Stx6 UTSW 1 155,077,706 (GRCm39) missense probably benign 0.39
R2389:Stx6 UTSW 1 155,073,164 (GRCm39) missense possibly damaging 0.96
R3125:Stx6 UTSW 1 155,034,654 (GRCm39) missense probably damaging 0.99
R4924:Stx6 UTSW 1 155,049,737 (GRCm39) missense probably damaging 1.00
R5642:Stx6 UTSW 1 155,073,925 (GRCm39) missense probably benign 0.00
R7369:Stx6 UTSW 1 155,073,130 (GRCm39) nonsense probably null
R8222:Stx6 UTSW 1 155,073,889 (GRCm39) missense possibly damaging 0.94
R9214:Stx6 UTSW 1 155,067,210 (GRCm39) missense probably benign 0.00
Posted On 2015-08-05