Incidental Mutation 'IGL00429:Trav13n-4'
ID 332406
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Trav13n-4
Ensembl Gene ENSMUSG00000076823
Gene Name T cell receptor alpha variable 13N-4
Synonyms Gm10907, ENSMUSG00000072517
Accession Numbers
Essential gene? Probably non essential (E-score: 0.063) question?
Stock # IGL00429
Quality Score
Status
Chromosome 14
Chromosomal Location 53599825-53601563 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 53601288 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Glutamine at position 19 (L19Q)
Ref Sequence ENSEMBL: ENSMUSP00000143372 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000103634] [ENSMUST00000196105]
AlphaFold A0A075B635
Predicted Effect probably benign
Transcript: ENSMUST00000103634
SMART Domains Protein: ENSMUSP00000100411
Gene: ENSMUSG00000076823

DomainStartEndE-ValueType
IGv 18 89 2.89e-9 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000196105
AA Change: L19Q

PolyPhen 2 Score 0.031 (Sensitivity: 0.95; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000143372
Gene: ENSMUSG00000076823
AA Change: L19Q

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
IGv 38 109 1.2e-11 SMART
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 44 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700009J07Rik G A 10: 77,729,673 (GRCm39) probably benign Het
4933411K16Rik T C 19: 42,040,983 (GRCm39) L38P probably damaging Het
Abca1 A G 4: 53,059,255 (GRCm39) probably null Het
Abca15 T A 7: 119,996,277 (GRCm39) I1401N probably damaging Het
Adam3 A C 8: 25,184,294 (GRCm39) Y569D probably damaging Het
Ap2a1 T C 7: 44,555,192 (GRCm39) S458G probably damaging Het
Asxl3 C T 18: 22,658,280 (GRCm39) P2097S probably benign Het
AW551984 T C 9: 39,504,145 (GRCm39) D607G probably benign Het
Ccdc158 C A 5: 92,805,740 (GRCm39) M338I probably benign Het
Cdh23 A G 10: 60,256,920 (GRCm39) S735P probably damaging Het
Cdh9 T C 15: 16,828,448 (GRCm39) V180A probably damaging Het
Cyp4a31 A T 4: 115,432,171 (GRCm39) probably benign Het
Dus4l A G 12: 31,691,668 (GRCm39) V180A probably benign Het
Dysf A T 6: 84,166,826 (GRCm39) T1672S probably damaging Het
F830016B08Rik T A 18: 60,433,340 (GRCm39) L141Q probably damaging Het
Fhod3 A G 18: 25,127,597 (GRCm39) E313G probably damaging Het
Gm4884 A G 7: 40,693,809 (GRCm39) T593A probably benign Het
H2bc14 T C 13: 21,906,310 (GRCm39) S15P possibly damaging Het
Il18r1 G A 1: 40,537,812 (GRCm39) E526K possibly damaging Het
Lama4 A T 10: 38,887,022 (GRCm39) H109L possibly damaging Het
Mab21l1 A C 3: 55,690,557 (GRCm39) Q48P probably damaging Het
Magi3 T A 3: 103,922,294 (GRCm39) K1474N probably damaging Het
Mre11a T C 9: 14,714,109 (GRCm39) F237L probably damaging Het
Mst1r A T 9: 107,790,449 (GRCm39) probably benign Het
Mtcl2 A C 2: 156,872,784 (GRCm39) F909C probably damaging Het
Myh2 C T 11: 67,071,616 (GRCm39) Q478* probably null Het
Mylip C A 13: 45,562,043 (GRCm39) P282T probably benign Het
Mymk T C 2: 26,952,799 (GRCm39) Y103C probably damaging Het
Necab1 A T 4: 15,052,656 (GRCm39) N107K probably damaging Het
Pclo T C 5: 14,730,753 (GRCm39) probably benign Het
Phgdh T C 3: 98,235,631 (GRCm39) K129E probably damaging Het
Plxna4 T C 6: 32,139,026 (GRCm39) Y1714C probably damaging Het
Pm20d2 A G 4: 33,187,205 (GRCm39) probably benign Het
Ppfibp2 A G 7: 107,296,801 (GRCm39) T172A probably benign Het
Prkca T C 11: 108,234,334 (GRCm39) T54A probably benign Het
Prlr A G 15: 10,328,410 (GRCm39) D295G probably benign Het
Rdh12 A G 12: 79,258,176 (GRCm39) I68V probably benign Het
Slc14a2 A G 18: 78,193,653 (GRCm39) F850L possibly damaging Het
Smad2 A T 18: 76,431,566 (GRCm39) S185C possibly damaging Het
Ush2a T A 1: 188,132,311 (GRCm39) C844* probably null Het
Vwce T A 19: 10,641,875 (GRCm39) probably null Het
Wdr95 T C 5: 149,518,709 (GRCm39) probably benign Het
Zfp143 T C 7: 109,690,979 (GRCm39) I510T probably damaging Het
Zfp930 G T 8: 69,680,634 (GRCm39) K90N probably damaging Het
Other mutations in Trav13n-4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00562:Trav13n-4 APN 14 53,601,423 (GRCm39) missense possibly damaging 0.94
IGL00563:Trav13n-4 APN 14 53,601,423 (GRCm39) missense possibly damaging 0.94
IGL01620:Trav13n-4 APN 14 53,601,473 (GRCm39) missense probably damaging 0.99
IGL01748:Trav13n-4 APN 14 53,601,470 (GRCm39) missense probably benign 0.15
IGL02327:Trav13n-4 APN 14 53,601,567 (GRCm39) unclassified probably benign
R4197:Trav13n-4 UTSW 14 53,601,378 (GRCm39) missense probably benign
R5467:Trav13n-4 UTSW 14 53,601,303 (GRCm39) missense probably damaging 1.00
R6765:Trav13n-4 UTSW 14 53,601,557 (GRCm39) missense probably benign
R6845:Trav13n-4 UTSW 14 53,599,856 (GRCm39) missense probably damaging 1.00
R7339:Trav13n-4 UTSW 14 53,601,435 (GRCm39) missense probably benign 0.02
R8744:Trav13n-4 UTSW 14 53,601,399 (GRCm39) missense probably damaging 0.99
Posted On 2015-08-05