Incidental Mutation 'IGL00562:Trav13n-4'
ID 332613
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Trav13n-4
Ensembl Gene ENSMUSG00000076823
Gene Name T cell receptor alpha variable 13N-4
Synonyms Gm10907, ENSMUSG00000072517
Accession Numbers
Essential gene? Probably non essential (E-score: 0.068) question?
Stock # IGL00562
Quality Score
Status
Chromosome 14
Chromosomal Location 53599825-53601563 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 53601423 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Glycine at position 64 (V64G)
Ref Sequence ENSEMBL: ENSMUSP00000143372 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000103634] [ENSMUST00000196105]
AlphaFold A0A075B635
Predicted Effect possibly damaging
Transcript: ENSMUST00000103634
AA Change: V44G

PolyPhen 2 Score 0.941 (Sensitivity: 0.80; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000100411
Gene: ENSMUSG00000076823
AA Change: V44G

DomainStartEndE-ValueType
IGv 18 89 2.89e-9 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000196105
AA Change: V64G

PolyPhen 2 Score 0.941 (Sensitivity: 0.80; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000143372
Gene: ENSMUSG00000076823
AA Change: V64G

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
IGv 38 109 1.2e-11 SMART
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 27 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1500035N22Rik T C 5: 25,202,619 (GRCm39) probably benign Het
AU016765 C A 17: 64,826,877 (GRCm39) noncoding transcript Het
Chaf1b T C 16: 93,697,079 (GRCm39) probably benign Het
Clstn2 A G 9: 97,464,505 (GRCm39) probably benign Het
Crip1 T A 12: 113,117,232 (GRCm39) probably null Het
Cubn A G 2: 13,299,041 (GRCm39) S3211P probably benign Het
Dlx6 C T 6: 6,865,143 (GRCm39) R172W probably damaging Het
Fktn A T 4: 53,747,007 (GRCm39) probably null Het
Focad T A 4: 88,267,046 (GRCm39) M1019K unknown Het
Fuca2 A T 10: 13,381,651 (GRCm39) D188V probably damaging Het
Kcna3 A G 3: 106,944,046 (GRCm39) D103G probably damaging Het
Mrpl19 A G 6: 81,942,853 (GRCm39) V19A probably benign Het
Ndufb3 T A 1: 58,634,958 (GRCm39) H103Q possibly damaging Het
Pkd1l3 T C 8: 110,382,779 (GRCm39) V1675A possibly damaging Het
Ptger4 A T 15: 5,272,614 (GRCm39) S2T probably benign Het
Saxo1 C T 4: 86,363,809 (GRCm39) E225K probably damaging Het
Sftpb G T 6: 72,286,845 (GRCm39) A228S probably benign Het
Slc22a29 T A 19: 8,138,993 (GRCm39) T490S probably benign Het
Slc29a1 T C 17: 45,900,918 (GRCm39) N50S probably damaging Het
Smc6 T A 12: 11,351,532 (GRCm39) S854T probably benign Het
Smim23 T C 11: 32,771,893 (GRCm39) T58A probably benign Het
Tas2r134 T C 2: 51,518,100 (GRCm39) I193T possibly damaging Het
Thsd7a G T 6: 12,379,658 (GRCm39) probably null Het
Trmt10a G A 3: 137,853,177 (GRCm39) E13K probably damaging Het
Txndc11 T C 16: 10,922,496 (GRCm39) S239G probably damaging Het
Vmn2r96 T A 17: 18,804,077 (GRCm39) N442K probably benign Het
Vps13a C T 19: 16,712,078 (GRCm39) probably null Het
Other mutations in Trav13n-4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00429:Trav13n-4 APN 14 53,601,288 (GRCm39) missense probably benign 0.03
IGL00563:Trav13n-4 APN 14 53,601,423 (GRCm39) missense possibly damaging 0.94
IGL01620:Trav13n-4 APN 14 53,601,473 (GRCm39) missense probably damaging 0.99
IGL01748:Trav13n-4 APN 14 53,601,470 (GRCm39) missense probably benign 0.15
IGL02327:Trav13n-4 APN 14 53,601,567 (GRCm39) unclassified probably benign
R4197:Trav13n-4 UTSW 14 53,601,378 (GRCm39) missense probably benign
R5467:Trav13n-4 UTSW 14 53,601,303 (GRCm39) missense probably damaging 1.00
R6765:Trav13n-4 UTSW 14 53,601,557 (GRCm39) missense probably benign
R6845:Trav13n-4 UTSW 14 53,599,856 (GRCm39) missense probably damaging 1.00
R7339:Trav13n-4 UTSW 14 53,601,435 (GRCm39) missense probably benign 0.02
R8744:Trav13n-4 UTSW 14 53,601,399 (GRCm39) missense probably damaging 0.99
Posted On 2015-08-05