Incidental Mutation 'R4515:Rapsn'
| ID |
332832 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Rapsn
|
| Ensembl Gene |
ENSMUSG00000002104 |
| Gene Name |
receptor-associated protein of the synapse |
| Synonyms |
43kDa acetylcholine receptor-associated protein, Nraps, rapsyn, Raps |
| MMRRC Submission |
041589-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R4515 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
2 |
| Chromosomal Location |
90865965-90876074 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 90873557 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Methionine
at position 288
(V288M)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000054150
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000050323]
[ENSMUST00000111445]
[ENSMUST00000111446]
|
| AlphaFold |
P12672 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000050323
AA Change: V288M
PolyPhen 2
Score 0.909 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000054150
Gene: ENSMUSG00000002104
AA Change: V288M
| Domain | Start | End | E-Value | Type |
|---|
|
TPR
|
6 |
39 |
5.62e1 |
SMART |
|
Blast:TPR
|
43 |
74 |
2e-10 |
BLAST |
|
TPR
|
83 |
116 |
2.56e1 |
SMART |
|
TPR
|
123 |
156 |
1.11e-2 |
SMART |
|
TPR
|
163 |
196 |
8.29e0 |
SMART |
|
TPR
|
206 |
239 |
1.24e0 |
SMART |
|
Blast:TPR
|
246 |
279 |
1e-14 |
BLAST |
|
TPR
|
286 |
319 |
2.07e1 |
SMART |
|
RING
|
363 |
402 |
2.67e-5 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000111445
|
| SMART Domains |
Protein: ENSMUSP00000107072
Gene: ENSMUSG00000002104
| Domain | Start | End | E-Value | Type |
|---|
|
TPR
|
6 |
39 |
5.62e1 |
SMART |
|
Blast:TPR
|
43 |
74 |
1e-10 |
BLAST |
|
TPR
|
83 |
116 |
2.56e1 |
SMART |
|
TPR
|
123 |
156 |
1.11e-2 |
SMART |
|
TPR
|
163 |
196 |
8.29e0 |
SMART |
|
TPR
|
206 |
239 |
1.24e0 |
SMART |
|
RING
|
304 |
343 |
2.67e-5 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111446
AA Change: V235M
PolyPhen 2
Score 0.877 (Sensitivity: 0.83; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000107073
Gene: ENSMUSG00000002104
AA Change: V235M
| Domain | Start | End | E-Value | Type |
|---|
|
TPR
|
6 |
39 |
5.62e1 |
SMART |
|
Blast:TPR
|
43 |
74 |
1e-10 |
BLAST |
|
TPR
|
83 |
116 |
2.56e1 |
SMART |
|
TPR
|
123 |
156 |
1.11e-2 |
SMART |
|
Blast:TPR
|
193 |
226 |
9e-15 |
BLAST |
|
TPR
|
233 |
266 |
2.07e1 |
SMART |
|
RING
|
310 |
349 |
2.67e-5 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000128008
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144822
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000146633
|
| Meta Mutation Damage Score |
0.1795 |
| Coding Region Coverage |
- 1x: 99.5%
- 3x: 98.7%
- 10x: 97.1%
- 20x: 94.6%
|
| Validation Efficiency |
96% (65/68) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of proteins that are receptor associated proteins of the synapse. The encoded protein contains a conserved cAMP-dependent protein kinase phosphorylation site, and plays a critical role in clustering and anchoring nicotinic acetylcholine receptors at synaptic sites by linking the receptors to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or spectrin. Mutations in this gene may play a role in postsynaptic congenital myasthenic syndromes. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Apr 2011]
PHENOTYPE: Homozygotes for a targeted null mutation exhibit absence of acetylcholine receptor clusters at end plate band of neuromuscular synapses, muscle weakness, and respiratory distress leading to lethality within hours of birth. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 59 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A430033K04Rik |
G |
T |
5: 138,646,006 (GRCm39) |
K630N |
probably damaging |
Het |
| Acss2 |
C |
A |
2: 155,398,283 (GRCm39) |
L335I |
probably benign |
Het |
| Alg6 |
A |
T |
4: 99,641,023 (GRCm39) |
|
probably benign |
Het |
| Atp8b3 |
C |
T |
10: 80,359,681 (GRCm39) |
M984I |
probably benign |
Het |
| Bsn |
G |
T |
9: 107,981,277 (GRCm39) |
|
probably null |
Het |
| Ccdc88a |
T |
C |
11: 29,432,651 (GRCm39) |
I1219T |
probably benign |
Het |
| Cdhr4 |
G |
A |
9: 107,870,150 (GRCm39) |
E52K |
probably benign |
Het |
| Ces1a |
T |
A |
8: 93,747,532 (GRCm39) |
N500Y |
probably damaging |
Het |
| Chd3 |
G |
T |
11: 69,240,703 (GRCm39) |
R1579S |
probably benign |
Het |
| Chrnb3 |
T |
C |
8: 27,875,118 (GRCm39) |
L39P |
probably damaging |
Het |
| Ckm |
A |
G |
7: 19,154,209 (GRCm39) |
K319E |
probably damaging |
Het |
| Cnot6 |
C |
T |
11: 49,593,363 (GRCm39) |
|
probably null |
Het |
| Copg1 |
A |
G |
6: 87,884,528 (GRCm39) |
|
probably benign |
Het |
| Dbn1 |
A |
T |
13: 55,624,042 (GRCm39) |
I350N |
possibly damaging |
Het |
| Dnah2 |
A |
G |
11: 69,356,457 (GRCm39) |
S2135P |
possibly damaging |
Het |
| Dsg2 |
C |
A |
18: 20,734,444 (GRCm39) |
D807E |
probably benign |
Het |
| Foxi1 |
A |
G |
11: 34,157,972 (GRCm39) |
F18L |
probably damaging |
Het |
| Galnt3 |
C |
A |
2: 65,923,954 (GRCm39) |
R438L |
probably damaging |
Het |
| Glod4 |
T |
A |
11: 76,134,397 (GRCm39) |
D25V |
probably damaging |
Het |
| Golga4 |
T |
A |
9: 118,388,076 (GRCm39) |
S1733T |
probably benign |
Het |
| H2-M10.3 |
C |
T |
17: 36,678,722 (GRCm39) |
|
probably null |
Het |
| Hemgn |
T |
C |
4: 46,396,477 (GRCm39) |
E253G |
probably damaging |
Het |
| Itsn1 |
G |
A |
16: 91,696,537 (GRCm39) |
V47M |
probably damaging |
Het |
| Kif5b |
A |
G |
18: 6,208,257 (GRCm39) |
V947A |
probably benign |
Het |
| Kif9 |
A |
G |
9: 110,318,935 (GRCm39) |
H133R |
probably benign |
Het |
| Lce1l |
T |
C |
3: 92,757,781 (GRCm39) |
T26A |
unknown |
Het |
| Macf1 |
T |
C |
4: 123,387,781 (GRCm39) |
E1172G |
probably damaging |
Het |
| Nkx3-2 |
C |
T |
5: 41,921,281 (GRCm39) |
V3M |
probably damaging |
Het |
| Nr2e1 |
G |
A |
10: 42,454,187 (GRCm39) |
T49I |
probably benign |
Het |
| Oc90 |
A |
G |
15: 65,764,242 (GRCm39) |
L138P |
probably damaging |
Het |
| Or7g12 |
T |
G |
9: 18,899,278 (GRCm39) |
|
probably null |
Het |
| Or8g34 |
C |
T |
9: 39,373,527 (GRCm39) |
R264* |
probably null |
Het |
| Orc4 |
G |
A |
2: 48,827,501 (GRCm39) |
P31S |
probably benign |
Het |
| Pabir3 |
G |
A |
X: 52,382,376 (GRCm39) |
R94H |
possibly damaging |
Het |
| Paqr3 |
T |
A |
5: 97,251,220 (GRCm39) |
N168I |
possibly damaging |
Het |
| Pcdhac1 |
T |
A |
18: 37,224,432 (GRCm39) |
I415N |
probably damaging |
Het |
| Pdik1l |
T |
C |
4: 134,006,207 (GRCm39) |
N75S |
probably damaging |
Het |
| Pik3r4 |
A |
G |
9: 105,549,924 (GRCm39) |
H1005R |
probably damaging |
Het |
| Plekhn1 |
T |
C |
4: 156,309,988 (GRCm39) |
S109G |
probably damaging |
Het |
| Prkch |
A |
G |
12: 73,749,612 (GRCm39) |
T402A |
possibly damaging |
Het |
| Ptger4 |
C |
A |
15: 5,271,860 (GRCm39) |
R253L |
probably damaging |
Het |
| Rabac1 |
A |
T |
7: 24,669,585 (GRCm39) |
Y173* |
probably null |
Het |
| Rnf26rt |
C |
T |
6: 76,473,792 (GRCm39) |
V275I |
probably benign |
Het |
| Sec31a |
A |
G |
5: 100,513,817 (GRCm39) |
S993P |
probably damaging |
Het |
| Septin4 |
A |
G |
11: 87,458,883 (GRCm39) |
H419R |
probably benign |
Het |
| Serpina9 |
T |
A |
12: 103,967,553 (GRCm39) |
M281L |
probably benign |
Het |
| Serpine1 |
G |
A |
5: 137,098,322 (GRCm39) |
A117V |
probably damaging |
Het |
| Sh3tc2 |
A |
G |
18: 62,120,764 (GRCm39) |
|
probably null |
Het |
| Sipa1l2 |
T |
C |
8: 126,218,965 (GRCm39) |
D124G |
probably benign |
Het |
| Slc6a12 |
T |
A |
6: 121,330,489 (GRCm39) |
|
probably null |
Het |
| Stk11 |
A |
G |
10: 79,952,435 (GRCm39) |
|
probably benign |
Het |
| Tcaf3 |
A |
G |
6: 42,566,930 (GRCm39) |
Y720H |
probably damaging |
Het |
| Tmem38a |
C |
T |
8: 73,326,005 (GRCm39) |
P20S |
possibly damaging |
Het |
| Tmprss11a |
C |
T |
5: 86,568,055 (GRCm39) |
R224K |
probably damaging |
Het |
| Tmprss15 |
C |
T |
16: 78,754,244 (GRCm39) |
S988N |
probably benign |
Het |
| Txn2 |
A |
T |
15: 77,799,643 (GRCm39) |
|
probably null |
Het |
| Ugt1a10 |
T |
A |
1: 87,983,919 (GRCm39) |
V239E |
probably damaging |
Het |
| Vmn2r102 |
A |
G |
17: 19,901,475 (GRCm39) |
Y534C |
probably damaging |
Het |
| Vmn2r78 |
A |
T |
7: 86,603,466 (GRCm39) |
D548V |
probably damaging |
Het |
|
| Other mutations in Rapsn |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00336:Rapsn
|
APN |
2 |
90,866,205 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01386:Rapsn
|
APN |
2 |
90,867,144 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01517:Rapsn
|
APN |
2 |
90,866,963 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01707:Rapsn
|
APN |
2 |
90,873,585 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02322:Rapsn
|
APN |
2 |
90,872,251 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
IGL02800:Rapsn
|
APN |
2 |
90,873,584 (GRCm39) |
missense |
probably benign |
|
|
hermitage
|
UTSW |
2 |
90,867,172 (GRCm39) |
missense |
probably damaging |
1.00 |
|
rasputin
|
UTSW |
2 |
90,866,269 (GRCm39) |
missense |
probably damaging |
1.00 |
|
tsarina
|
UTSW |
2 |
90,875,859 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0744:Rapsn
|
UTSW |
2 |
90,867,153 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0833:Rapsn
|
UTSW |
2 |
90,867,153 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0836:Rapsn
|
UTSW |
2 |
90,867,153 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1224:Rapsn
|
UTSW |
2 |
90,873,543 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1294:Rapsn
|
UTSW |
2 |
90,867,120 (GRCm39) |
nonsense |
probably null |
|
|
R1619:Rapsn
|
UTSW |
2 |
90,873,504 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R2891:Rapsn
|
UTSW |
2 |
90,867,169 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2892:Rapsn
|
UTSW |
2 |
90,867,169 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2893:Rapsn
|
UTSW |
2 |
90,867,169 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4135:Rapsn
|
UTSW |
2 |
90,867,162 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5689:Rapsn
|
UTSW |
2 |
90,866,269 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5860:Rapsn
|
UTSW |
2 |
90,875,859 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5953:Rapsn
|
UTSW |
2 |
90,872,308 (GRCm39) |
missense |
probably benign |
0.04 |
|
R6495:Rapsn
|
UTSW |
2 |
90,866,973 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7644:Rapsn
|
UTSW |
2 |
90,872,299 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R7775:Rapsn
|
UTSW |
2 |
90,875,293 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7778:Rapsn
|
UTSW |
2 |
90,875,293 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7896:Rapsn
|
UTSW |
2 |
90,875,300 (GRCm39) |
missense |
probably benign |
0.06 |
|
R9016:Rapsn
|
UTSW |
2 |
90,867,172 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9118:Rapsn
|
UTSW |
2 |
90,875,378 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9643:Rapsn
|
UTSW |
2 |
90,872,268 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9746:Rapsn
|
UTSW |
2 |
90,875,823 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9748:Rapsn
|
UTSW |
2 |
90,875,823 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0064:Rapsn
|
UTSW |
2 |
90,873,348 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1176:Rapsn
|
UTSW |
2 |
90,866,943 (GRCm39) |
missense |
probably benign |
0.10 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGAAGATTGCCCTGCAGC -3'
(R):5'- GTTTAGGTCTCATGGCAGCAG -3'
Sequencing Primer
(F):5'- AGGCACTCTGTCTGCTCTG -3'
(R):5'- CTCATGGCAGCAGATGTTAAATAAAG -3'
|
| Posted On |
2015-08-18 |
Incidental Mutation