Incidental Mutation 'R4540:Or4f56'
| ID |
333479 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or4f56
|
| Ensembl Gene |
ENSMUSG00000074955 |
| Gene Name |
olfactory receptor family 4 subfamily F member 56 |
| Synonyms |
MOR245-8, Olfr1305, GA_x6K02T2Q125-72930843-72929905 |
| MMRRC Submission |
041776-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.075)
|
| Stock # |
R4540 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
2 |
| Chromosomal Location |
111703260-111704198 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 111703546 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Cysteine
at position 218
(Y218C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000149852
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000099608]
[ENSMUST00000213405]
[ENSMUST00000213737]
|
| AlphaFold |
A2AVW3 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000099608
AA Change: Y218C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000097203
Gene: ENSMUSG00000074955
AA Change: Y218C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
305 |
1.4e-41 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
35 |
302 |
6.8e-7 |
PFAM |
|
Pfam:7tm_1
|
41 |
287 |
4.1e-21 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000213405
AA Change: Y218C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000213737
AA Change: Y218C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000216310
|
| Meta Mutation Damage Score |
0.6467 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.6%
- 10x: 97.4%
- 20x: 95.5%
|
| Validation Efficiency |
100% (43/43) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adam6a |
A |
T |
12: 113,508,119 (GRCm39) |
H164L |
probably damaging |
Het |
| Arrdc3 |
C |
A |
13: 81,038,790 (GRCm39) |
R31S |
possibly damaging |
Het |
| Baiap3 |
C |
T |
17: 25,465,644 (GRCm39) |
V585M |
probably damaging |
Het |
| Braf |
A |
G |
6: 39,621,267 (GRCm39) |
S391P |
probably damaging |
Het |
| Ccdc51 |
T |
C |
9: 108,921,288 (GRCm39) |
F392L |
possibly damaging |
Het |
| Cd1d1 |
A |
G |
3: 86,904,012 (GRCm39) |
I194T |
probably benign |
Het |
| Cep162 |
T |
C |
9: 87,094,992 (GRCm39) |
K806E |
probably damaging |
Het |
| Cntn4 |
A |
G |
6: 106,652,709 (GRCm39) |
E726G |
probably damaging |
Het |
| Col11a1 |
A |
G |
3: 113,890,815 (GRCm39) |
Y384C |
unknown |
Het |
| Cops3 |
A |
T |
11: 59,720,980 (GRCm39) |
L145H |
probably damaging |
Het |
| Cul9 |
C |
T |
17: 46,814,015 (GRCm39) |
M2286I |
probably null |
Het |
| Echdc1 |
G |
A |
10: 29,220,578 (GRCm39) |
V245I |
probably benign |
Het |
| Fsip2 |
A |
T |
2: 82,782,009 (GRCm39) |
M261L |
probably benign |
Het |
| Gm4353 |
A |
G |
7: 115,683,212 (GRCm39) |
L123P |
probably benign |
Het |
| Hcfc2 |
G |
C |
10: 82,568,481 (GRCm39) |
E42Q |
probably benign |
Het |
| Hfm1 |
A |
C |
5: 107,022,087 (GRCm39) |
Y199* |
probably null |
Het |
| Iba57 |
G |
A |
11: 59,053,904 (GRCm39) |
|
probably benign |
Het |
| Ihh |
T |
A |
1: 74,987,558 (GRCm39) |
N161I |
possibly damaging |
Het |
| Kcnh7 |
A |
G |
2: 62,569,530 (GRCm39) |
S789P |
probably damaging |
Het |
| Kndc1 |
C |
A |
7: 139,501,343 (GRCm39) |
C877* |
probably null |
Het |
| Lhcgr |
A |
G |
17: 89,063,036 (GRCm39) |
I212T |
probably benign |
Het |
| Lrrtm2 |
T |
A |
18: 35,346,199 (GRCm39) |
T368S |
probably benign |
Het |
| Mag |
A |
C |
7: 30,600,154 (GRCm39) |
V500G |
probably damaging |
Het |
| Nadsyn1 |
A |
G |
7: 143,356,960 (GRCm39) |
V512A |
probably damaging |
Het |
| Nlrp3 |
G |
A |
11: 59,442,725 (GRCm39) |
C759Y |
possibly damaging |
Het |
| Nup107 |
T |
C |
10: 117,597,925 (GRCm39) |
|
probably null |
Het |
| Or4c3d |
T |
C |
2: 89,882,494 (GRCm39) |
Y58C |
probably damaging |
Het |
| Pcdha1 |
A |
C |
18: 37,064,680 (GRCm39) |
D448A |
probably damaging |
Het |
| Pitrm1 |
T |
A |
13: 6,605,506 (GRCm39) |
|
probably null |
Het |
| Pth2r |
A |
G |
1: 65,321,360 (GRCm39) |
N13S |
probably benign |
Het |
| Rae1 |
G |
T |
2: 172,857,185 (GRCm39) |
|
probably benign |
Het |
| Selenoi |
A |
G |
5: 30,461,085 (GRCm39) |
D107G |
probably damaging |
Het |
| Sost |
G |
A |
11: 101,857,670 (GRCm39) |
P44S |
probably damaging |
Het |
| Spag17 |
C |
T |
3: 99,995,697 (GRCm39) |
P1779S |
probably damaging |
Het |
| Supt3 |
T |
C |
17: 45,347,662 (GRCm39) |
V208A |
probably benign |
Het |
| Tbc1d30 |
T |
C |
10: 121,115,063 (GRCm39) |
E365G |
probably damaging |
Het |
| Tnxb |
C |
T |
17: 34,922,309 (GRCm39) |
T2374I |
possibly damaging |
Het |
| Trip12 |
A |
G |
1: 84,726,997 (GRCm39) |
I1T |
probably damaging |
Het |
|
| Other mutations in Or4f56 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01329:Or4f56
|
APN |
2 |
111,703,295 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02198:Or4f56
|
APN |
2 |
111,703,593 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02277:Or4f56
|
APN |
2 |
111,703,925 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
IGL02302:Or4f56
|
APN |
2 |
111,703,887 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
IGL03348:Or4f56
|
APN |
2 |
111,703,493 (GRCm39) |
missense |
probably damaging |
0.99 |
|
PIT4131001:Or4f56
|
UTSW |
2 |
111,703,649 (GRCm39) |
missense |
probably benign |
0.02 |
|
R2144:Or4f56
|
UTSW |
2 |
111,703,768 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R2860:Or4f56
|
UTSW |
2 |
111,703,818 (GRCm39) |
nonsense |
probably null |
|
|
R2861:Or4f56
|
UTSW |
2 |
111,703,818 (GRCm39) |
nonsense |
probably null |
|
|
R3785:Or4f56
|
UTSW |
2 |
111,703,831 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4474:Or4f56
|
UTSW |
2 |
111,703,784 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R4508:Or4f56
|
UTSW |
2 |
111,703,947 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4783:Or4f56
|
UTSW |
2 |
111,703,395 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R4784:Or4f56
|
UTSW |
2 |
111,703,395 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R4785:Or4f56
|
UTSW |
2 |
111,703,395 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5410:Or4f56
|
UTSW |
2 |
111,703,637 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5491:Or4f56
|
UTSW |
2 |
111,703,907 (GRCm39) |
missense |
probably benign |
0.44 |
|
R6875:Or4f56
|
UTSW |
2 |
111,703,306 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R7185:Or4f56
|
UTSW |
2 |
111,704,167 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R7992:Or4f56
|
UTSW |
2 |
111,703,280 (GRCm39) |
missense |
probably benign |
|
|
R9100:Or4f56
|
UTSW |
2 |
111,703,606 (GRCm39) |
missense |
possibly damaging |
0.61 |
|
| Predicted Primers |
PCR Primer
(F):5'- TTAGAAAGGGAGTCAAAACTGCATC -3'
(R):5'- TGCTTGGATCATTGGTCTCATC -3'
Sequencing Primer
(F):5'- GGAGTCAAAACTGCATCAAATATAGC -3'
(R):5'- ATCCATTCATCAGCCCAATTGG -3'
|
| Posted On |
2015-08-18 |
Incidental Mutation