Mutagenetix > Incidental Mutation

Incidental Mutation 'R4576:Slitrk6'

342498

Institutional Source

Beutler Lab

Gene Symbol

Slitrk6

Ensembl Gene

ENSMUSG00000045871

Gene Name

SLIT and NTRK-like family, member 6

Synonyms

4832410J21Rik

MMRRC Submission

041799-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.148) question?

Stock #

R4576 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

110986012-110992581 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 110987602 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Phenylalanine at position 702 (V702F)

Ref Sequence

ENSEMBL: ENSMUSP00000077492 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000078386]

AlphaFold

Q8C110

Predicted Effect

probably benign
Transcript: ENSMUST00000078386
AA Change: V702F

PolyPhen 2 Score 0.055 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000077492
Gene: ENSMUSG00000045871
AA Change: V702F

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Blast:LRRNT	30	68	4e-15	BLAST
LRR	87	110	1.71e1	SMART
LRR	111	134	3.07e-1	SMART
LRR	135	158	4.44e0	SMART
LRR_TYP	159	182	2.09e-3	SMART
LRR	185	206	6.23e1	SMART
LRRCT	218	268	5.61e-5	SMART
low complexity region	287	301	N/A	INTRINSIC
Blast:LRRNT	327	364	2e-17	BLAST
LRR	388	408	2.68e1	SMART
LRR_TYP	409	432	3.63e-3	SMART
LRR_TYP	433	456	6.23e-2	SMART
LRR_TYP	457	480	3.69e-4	SMART
low complexity region	501	513	N/A	INTRINSIC
LRRCT	516	566	1.53e-6	SMART
transmembrane domain	610	632	N/A	INTRINSIC
low complexity region	634	642	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

98% (84/86)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the SLITRK protein family. Members of this family are integral membrane proteins that are characterized by two N-terminal leucine-rich repeat (LRR) domains and a C-terminal region that shares homology with trk neurotrophin receptors. This protein functions as a regulator of neurite outgrowth required for normal hearing and vision. Mutations in this gene are a cause of myopia and deafness. [provided by RefSeq, Dec 2014]
PHENOTYPE: Homozygous deficient mice show pronounced reduction in cochlear innervation. Innervation to the posterior crista is variably impaired and a there is a loss of neurons in the spiral and vestibular ganglia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adhfe1	A	T	1: 9,623,979 (GRCm39)	D160V	probably damaging	Het
Ano9	T	C	7: 140,684,051 (GRCm39)	Q538R	probably damaging	Het
Atp4a	A	G	7: 30,417,147 (GRCm39)	D510G	probably benign	Het
Atp8a1	T	C	5: 67,973,158 (GRCm39)		probably benign	Het
Auts2	C	T	5: 132,287,773 (GRCm39)	G70E	probably benign	Het
C7	A	G	15: 5,032,238 (GRCm39)	S658P	probably damaging	Het
Cdh9	T	C	15: 16,832,325 (GRCm39)	V404A	possibly damaging	Het
Cfap54	C	T	10: 92,879,090 (GRCm39)		probably null	Het
Chml	G	T	1: 175,514,506 (GRCm39)	Q129K	probably damaging	Het
Chst2	T	C	9: 95,287,224 (GRCm39)	H374R	probably damaging	Het
Cimip2a	T	C	2: 25,110,300 (GRCm39)	S71P	probably benign	Het
Cirbp	A	G	10: 80,006,075 (GRCm39)	K84E	probably damaging	Het
Cln6	G	T	9: 62,746,231 (GRCm39)	Q23H	probably benign	Het
Cntn5	A	G	9: 9,673,297 (GRCm39)	M801T	probably benign	Het
Dapk1	A	T	13: 60,869,636 (GRCm39)	M293L	probably benign	Het
Ddx11	A	G	17: 66,457,721 (GRCm39)	K869E	probably damaging	Het
Ddx17	A	T	15: 79,425,347 (GRCm39)	M108K	probably benign	Het
Dnaaf5	C	A	5: 139,171,394 (GRCm39)	A557D	probably damaging	Het
Ecpas	A	T	4: 58,834,708 (GRCm39)		probably benign	Het
Edil3	T	C	13: 89,467,850 (GRCm39)	Y452H	probably damaging	Het
Elfn1	T	C	5: 139,957,808 (GRCm39)	S271P	probably benign	Het
Enah	G	A	1: 181,747,128 (GRCm39)	S298L	possibly damaging	Het
Exoc7	T	C	11: 116,180,009 (GRCm39)	*685W	probably null	Het
Fgfbp1	C	T	5: 44,136,806 (GRCm39)	R162H	probably benign	Het
Foxj3	A	G	4: 119,478,860 (GRCm39)	S439G	unknown	Het
Fzd9	A	G	5: 135,279,166 (GRCm39)	S240P	probably damaging	Het
Gin1	A	G	1: 97,720,064 (GRCm39)	D442G	probably damaging	Het
Gm10804	C	T	2: 93,299,014 (GRCm39)		noncoding transcript	Het
Grhl3	G	T	4: 135,288,562 (GRCm39)	T41K	probably damaging	Het
H6pd	A	T	4: 150,078,933 (GRCm39)	D243E	probably damaging	Het
Heatr6	T	A	11: 83,655,826 (GRCm39)	S306T	probably benign	Het
Hkdc1	T	C	10: 62,221,622 (GRCm39)	D812G	possibly damaging	Het
Hmcn1	G	T	1: 150,610,238 (GRCm39)	T1477K	probably benign	Het
Ift80	A	G	3: 68,857,863 (GRCm39)	S261P	possibly damaging	Het
Kcnu1	A	T	8: 26,380,048 (GRCm39)	D424V	probably benign	Het
Kctd1	A	G	18: 15,140,757 (GRCm39)	S658P	probably damaging	Het
Klk12	A	G	7: 43,422,667 (GRCm39)	D198G	probably damaging	Het
Kntc1	T	G	5: 123,904,018 (GRCm39)	L345R	probably damaging	Het
Llph-ps2	A	G	X: 13,084,690 (GRCm39)		noncoding transcript	Het
Lpxn	T	C	19: 12,810,654 (GRCm39)	I366T	probably benign	Het
Lrp1	ACAGGCGC	AC	10: 127,376,057 (GRCm39)		probably benign	Het
Maml3	G	A	3: 51,763,927 (GRCm39)	Q346*	probably null	Het
Mef2a	T	C	7: 66,890,187 (GRCm39)	N131S	probably benign	Het
Mlc1	G	A	15: 88,858,740 (GRCm39)	T136M	probably damaging	Het
Mplkipl1	C	T	19: 61,164,364 (GRCm39)	G24R	unknown	Het
Pcdhga9	A	C	18: 37,870,881 (GRCm39)	N237H	probably damaging	Het
Pde4dip	C	A	3: 97,661,565 (GRCm39)	E657D	probably damaging	Het
Pknox2	A	G	9: 36,834,844 (GRCm39)		probably benign	Het
Plcb3	C	T	19: 6,936,415 (GRCm39)		probably benign	Het
Plxnd1	G	A	6: 115,945,005 (GRCm39)	A99V	probably benign	Het
Pnpla2	T	C	7: 141,037,257 (GRCm39)	S87P	probably damaging	Het
Ppp1r14c	G	T	10: 3,316,912 (GRCm39)	K82N	probably damaging	Het
Pum3	G	A	19: 27,393,308 (GRCm39)	T389M	probably benign	Het
Pxdn	A	T	12: 30,061,922 (GRCm39)	T1165S	probably benign	Het
Rasgrf2	T	C	13: 92,044,529 (GRCm39)	D925G	possibly damaging	Het
Samhd1	A	T	2: 156,943,670 (GRCm39)	C615S	probably damaging	Het
Sec16a	A	T	2: 26,321,131 (GRCm39)	Y1320*	probably null	Het
Slco6b1	T	A	1: 96,916,422 (GRCm39)		noncoding transcript	Het
Spata31d1b	C	A	13: 59,864,675 (GRCm39)	H608N	probably damaging	Het
Spef1l	A	G	7: 139,558,043 (GRCm39)	I51T	probably damaging	Het
Srpra	T	C	9: 35,125,904 (GRCm39)	I394T	possibly damaging	Het
Svop	C	T	5: 114,203,743 (GRCm39)	V13M	probably damaging	Het
Tacc3	T	A	5: 33,818,841 (GRCm39)		probably benign	Het
Tango2	A	T	16: 18,119,392 (GRCm39)	D146E	probably damaging	Het
Thbs1	G	A	2: 117,949,897 (GRCm39)	R624Q	probably damaging	Het
Tmem161a	T	C	8: 70,634,713 (GRCm39)		probably null	Het
Tmem175	A	G	5: 108,792,468 (GRCm39)	D248G	possibly damaging	Het
Traf3ip2	A	G	10: 39,510,650 (GRCm39)	N308D	probably damaging	Het
Trim30b	T	C	7: 104,006,538 (GRCm39)	Y106C	possibly damaging	Het
Trip11	G	A	12: 101,852,499 (GRCm39)	Q521*	probably null	Het
Tssk5	C	T	15: 76,256,668 (GRCm39)	R280Q	probably benign	Het
Ttc16	A	T	2: 32,660,071 (GRCm39)	F246I	probably benign	Het
Unc79	T	C	12: 102,968,062 (GRCm39)		probably benign	Het
Vmn1r74	A	G	7: 11,580,696 (GRCm39)		probably null	Het
Vmn2r16	A	T	5: 109,511,665 (GRCm39)	Y624F	possibly damaging	Het
Zc3h4	G	A	7: 16,168,579 (GRCm39)	R896H	unknown	Het
Zfp941	T	A	7: 140,391,503 (GRCm39)	K619*	probably null	Het
Zfp970	A	T	2: 177,167,473 (GRCm39)	H349L	probably damaging	Het

Other mutations in Slitrk6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00517:Slitrk6	APN	14	110,988,547 (GRCm39)	missense	probably benign	0.35
IGL01131:Slitrk6	APN	14	110,989,008 (GRCm39)	missense	probably damaging	1.00
IGL01294:Slitrk6	APN	14	110,987,506 (GRCm39)	missense	probably benign
IGL01295:Slitrk6	APN	14	110,988,868 (GRCm39)	missense	possibly damaging	0.50
IGL01762:Slitrk6	APN	14	110,989,056 (GRCm39)	missense	probably damaging	1.00
IGL02165:Slitrk6	APN	14	110,989,249 (GRCm39)	missense	probably benign	0.41
IGL02546:Slitrk6	APN	14	110,987,226 (GRCm39)	missense	probably benign	0.18
IGL03103:Slitrk6	APN	14	110,987,373 (GRCm39)	missense	probably benign
PIT1430001:Slitrk6	UTSW	14	110,987,859 (GRCm39)	missense	possibly damaging	0.93
PIT4480001:Slitrk6	UTSW	14	110,987,257 (GRCm39)	frame shift	probably null
R0035:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0066:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0067:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0069:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0107:Slitrk6	UTSW	14	110,989,395 (GRCm39)	missense	possibly damaging	0.69
R0157:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0422:Slitrk6	UTSW	14	110,989,725 (GRCm39)	start gained	probably benign
R0422:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0454:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0505:Slitrk6	UTSW	14	110,987,364 (GRCm39)	missense	probably damaging	1.00
R0633:Slitrk6	UTSW	14	110,989,317 (GRCm39)	missense	probably damaging	1.00
R0711:Slitrk6	UTSW	14	110,987,251 (GRCm39)	missense	probably damaging	1.00
R0843:Slitrk6	UTSW	14	110,987,530 (GRCm39)	missense	probably benign
R1298:Slitrk6	UTSW	14	110,989,297 (GRCm39)	missense	possibly damaging	0.94
R1693:Slitrk6	UTSW	14	110,988,360 (GRCm39)	missense	probably damaging	1.00
R1756:Slitrk6	UTSW	14	110,987,984 (GRCm39)	missense	probably benign
R1998:Slitrk6	UTSW	14	110,989,255 (GRCm39)	missense	probably damaging	0.99
R2049:Slitrk6	UTSW	14	110,988,226 (GRCm39)	missense	probably benign	0.00
R2140:Slitrk6	UTSW	14	110,988,226 (GRCm39)	missense	probably benign	0.00
R2142:Slitrk6	UTSW	14	110,988,226 (GRCm39)	missense	probably benign	0.00
R2314:Slitrk6	UTSW	14	110,989,387 (GRCm39)	missense	probably damaging	1.00
R2566:Slitrk6	UTSW	14	110,987,704 (GRCm39)	missense	probably benign	0.00
R4231:Slitrk6	UTSW	14	110,988,820 (GRCm39)	missense	probably benign	0.02
R4236:Slitrk6	UTSW	14	110,987,580 (GRCm39)	missense	probably benign	0.07
R4247:Slitrk6	UTSW	14	110,988,171 (GRCm39)	missense	probably damaging	1.00
R4856:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4858:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4859:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4860:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4860:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4886:Slitrk6	UTSW	14	110,989,315 (GRCm39)	missense	probably damaging	1.00
R4931:Slitrk6	UTSW	14	110,987,811 (GRCm39)	missense	probably damaging	1.00
R5255:Slitrk6	UTSW	14	110,987,185 (GRCm39)	makesense	probably null
R5281:Slitrk6	UTSW	14	110,987,805 (GRCm39)	missense	probably damaging	1.00
R5450:Slitrk6	UTSW	14	110,987,529 (GRCm39)	missense	probably benign
R5579:Slitrk6	UTSW	14	110,988,649 (GRCm39)	missense	possibly damaging	0.82
R5689:Slitrk6	UTSW	14	110,989,558 (GRCm39)	missense	probably benign
R5935:Slitrk6	UTSW	14	110,987,305 (GRCm39)	missense	probably benign	0.00
R6016:Slitrk6	UTSW	14	110,987,958 (GRCm39)	missense	probably benign	0.00
R6312:Slitrk6	UTSW	14	110,987,679 (GRCm39)	missense	probably benign	0.00
R6890:Slitrk6	UTSW	14	110,988,528 (GRCm39)	nonsense	probably null
R6952:Slitrk6	UTSW	14	110,987,974 (GRCm39)	missense	probably benign
R7378:Slitrk6	UTSW	14	110,987,295 (GRCm39)	missense	probably damaging	1.00
R8354:Slitrk6	UTSW	14	110,989,478 (GRCm39)	missense	probably damaging	1.00
R8401:Slitrk6	UTSW	14	110,989,453 (GRCm39)	missense	possibly damaging	0.67
R8454:Slitrk6	UTSW	14	110,989,478 (GRCm39)	missense	probably damaging	1.00
R8807:Slitrk6	UTSW	14	110,988,123 (GRCm39)	missense	possibly damaging	0.77
R8814:Slitrk6	UTSW	14	110,987,370 (GRCm39)	missense	probably benign
R8826:Slitrk6	UTSW	14	110,988,801 (GRCm39)	missense	probably benign
R9681:Slitrk6	UTSW	14	110,988,258 (GRCm39)	missense	probably damaging	1.00
R9740:Slitrk6	UTSW	14	110,987,444 (GRCm39)	missense	probably benign	0.13
R9740:Slitrk6	UTSW	14	110,987,430 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GCCAAGTTGCTGAAGTTCCC -3'
(R):5'- CTATTGTATTCTGTGCCGCG -3'

Sequencing Primer
(F):5'- GAAGTTCCCTCTCTTTCTCCAAAATG -3'
(R):5'- ATTCTGTGCCGCGGGGATC -3'

Posted On

2015-09-24