Incidental Mutation 'R4558:Pramel13'
ID |
342940 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Pramel13
|
Ensembl Gene |
ENSMUSG00000028591 |
Gene Name |
PRAME like 13 |
Synonyms |
4930569K13Rik, Pramef12 |
MMRRC Submission |
042005-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.057)
|
Stock # |
R4558 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
4 |
Chromosomal Location |
144118244-144135034 bp(-) (GRCm39) |
Type of Mutation |
start codon destroyed |
DNA Base Change (assembly) |
T to C
at 144122542 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Methionine to Valine
at position 1
(M1V)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000030326
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000030326]
[ENSMUST00000123854]
|
AlphaFold |
Q9D2F1 |
Predicted Effect |
probably null
Transcript: ENSMUST00000030326
AA Change: M1V
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000030326 Gene: ENSMUSG00000028591 AA Change: M1V
Domain | Start | End | E-Value | Type |
SCOP:d1a4ya_
|
223 |
414 |
7e-12 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000123854
AA Change: M1V
PolyPhen 2
Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)
|
Meta Mutation Damage Score |
0.9165 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 95.1%
|
Validation Efficiency |
100% (36/36) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 32 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1700017G19Rik |
A |
G |
3: 40,567,240 (GRCm39) |
|
noncoding transcript |
Het |
A830018L16Rik |
C |
A |
1: 12,042,300 (GRCm39) |
S440* |
probably null |
Het |
Acot11 |
T |
C |
4: 106,605,563 (GRCm39) |
N583S |
probably damaging |
Het |
Alox12 |
T |
G |
11: 70,143,889 (GRCm39) |
M164L |
probably benign |
Het |
Atad2b |
A |
G |
12: 4,993,223 (GRCm39) |
I247M |
probably benign |
Het |
Bmpr2 |
T |
A |
1: 59,884,851 (GRCm39) |
M279K |
probably damaging |
Het |
Cacna2d3 |
T |
C |
14: 28,825,670 (GRCm39) |
T502A |
possibly damaging |
Het |
Casp12 |
A |
T |
9: 5,352,742 (GRCm39) |
Y188F |
probably damaging |
Het |
Catsperb |
A |
G |
12: 101,557,799 (GRCm39) |
Y790C |
possibly damaging |
Het |
Cnbd1 |
G |
T |
4: 19,055,095 (GRCm39) |
N110K |
possibly damaging |
Het |
Entrep1 |
G |
A |
19: 24,007,913 (GRCm39) |
S130L |
probably damaging |
Het |
Fam227b |
C |
T |
2: 125,968,963 (GRCm39) |
S37N |
probably benign |
Het |
Fsip2 |
T |
C |
2: 82,815,297 (GRCm39) |
S3677P |
possibly damaging |
Het |
Gm10764 |
A |
G |
10: 87,126,682 (GRCm39) |
|
noncoding transcript |
Het |
H2-Q6 |
T |
C |
17: 35,647,291 (GRCm39) |
V312A |
probably benign |
Het |
Hecw1 |
T |
A |
13: 14,422,190 (GRCm39) |
D972V |
probably damaging |
Het |
Kalrn |
G |
A |
16: 33,807,578 (GRCm39) |
T2597I |
possibly damaging |
Het |
Kng1 |
C |
A |
16: 22,896,168 (GRCm39) |
|
probably null |
Het |
Med13 |
T |
C |
11: 86,189,880 (GRCm39) |
T1010A |
probably damaging |
Het |
Nbeal1 |
C |
T |
1: 60,320,469 (GRCm39) |
R2021* |
probably null |
Het |
Ncapg |
A |
T |
5: 45,833,986 (GRCm39) |
T341S |
probably benign |
Het |
Obscn |
T |
C |
11: 59,022,472 (GRCm39) |
R758G |
possibly damaging |
Het |
Pabir2 |
G |
A |
X: 52,349,554 (GRCm39) |
|
probably benign |
Het |
Pcdhb4 |
A |
G |
18: 37,443,017 (GRCm39) |
I776V |
probably benign |
Het |
Ppp4r4 |
T |
C |
12: 103,573,192 (GRCm39) |
V697A |
probably benign |
Het |
Psd4 |
G |
A |
2: 24,294,806 (GRCm39) |
V789M |
probably damaging |
Het |
Rasa3 |
T |
C |
8: 13,648,259 (GRCm39) |
E135G |
probably damaging |
Het |
Serpinb9c |
T |
A |
13: 33,338,482 (GRCm39) |
E139V |
probably benign |
Het |
Sgsm1 |
G |
A |
5: 113,405,977 (GRCm39) |
|
probably benign |
Het |
Tmem161b |
A |
G |
13: 84,399,363 (GRCm39) |
I6M |
possibly damaging |
Het |
Upf2 |
A |
G |
2: 5,978,404 (GRCm39) |
M423V |
unknown |
Het |
Vmn1r207 |
A |
G |
13: 22,910,581 (GRCm39) |
|
noncoding transcript |
Het |
|
Other mutations in Pramel13 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00324:Pramel13
|
APN |
4 |
144,121,310 (GRCm39) |
missense |
possibly damaging |
0.91 |
IGL01107:Pramel13
|
APN |
4 |
144,119,664 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01935:Pramel13
|
APN |
4 |
144,119,172 (GRCm39) |
unclassified |
probably benign |
|
IGL02436:Pramel13
|
APN |
4 |
144,119,539 (GRCm39) |
missense |
possibly damaging |
0.95 |
IGL02491:Pramel13
|
APN |
4 |
144,121,322 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02744:Pramel13
|
APN |
4 |
144,119,493 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03338:Pramel13
|
APN |
4 |
144,121,397 (GRCm39) |
missense |
probably benign |
0.01 |
R0005:Pramel13
|
UTSW |
4 |
144,122,423 (GRCm39) |
missense |
probably damaging |
1.00 |
R1401:Pramel13
|
UTSW |
4 |
144,121,658 (GRCm39) |
missense |
probably benign |
0.00 |
R1611:Pramel13
|
UTSW |
4 |
144,119,382 (GRCm39) |
missense |
probably benign |
0.20 |
R1667:Pramel13
|
UTSW |
4 |
144,119,606 (GRCm39) |
nonsense |
probably null |
|
R2017:Pramel13
|
UTSW |
4 |
144,121,244 (GRCm39) |
missense |
possibly damaging |
0.49 |
R2290:Pramel13
|
UTSW |
4 |
144,121,692 (GRCm39) |
missense |
probably benign |
0.19 |
R2290:Pramel13
|
UTSW |
4 |
144,121,269 (GRCm39) |
missense |
probably benign |
0.00 |
R2310:Pramel13
|
UTSW |
4 |
144,119,475 (GRCm39) |
splice site |
probably null |
|
R2912:Pramel13
|
UTSW |
4 |
144,119,304 (GRCm39) |
missense |
probably damaging |
1.00 |
R2913:Pramel13
|
UTSW |
4 |
144,119,304 (GRCm39) |
missense |
probably damaging |
1.00 |
R5162:Pramel13
|
UTSW |
4 |
144,121,482 (GRCm39) |
missense |
probably damaging |
0.96 |
R5521:Pramel13
|
UTSW |
4 |
144,122,541 (GRCm39) |
start codon destroyed |
probably null |
1.00 |
R5530:Pramel13
|
UTSW |
4 |
144,119,232 (GRCm39) |
missense |
probably benign |
0.03 |
R5669:Pramel13
|
UTSW |
4 |
144,122,413 (GRCm39) |
missense |
probably benign |
0.03 |
R6032:Pramel13
|
UTSW |
4 |
144,119,598 (GRCm39) |
missense |
possibly damaging |
0.82 |
R6032:Pramel13
|
UTSW |
4 |
144,119,598 (GRCm39) |
missense |
possibly damaging |
0.82 |
R6314:Pramel13
|
UTSW |
4 |
144,121,157 (GRCm39) |
missense |
probably damaging |
0.98 |
R6322:Pramel13
|
UTSW |
4 |
144,119,475 (GRCm39) |
missense |
probably benign |
0.09 |
R6431:Pramel13
|
UTSW |
4 |
144,119,653 (GRCm39) |
missense |
possibly damaging |
0.83 |
R7729:Pramel13
|
UTSW |
4 |
144,119,434 (GRCm39) |
missense |
probably damaging |
1.00 |
R8324:Pramel13
|
UTSW |
4 |
144,122,427 (GRCm39) |
missense |
probably damaging |
1.00 |
R8778:Pramel13
|
UTSW |
4 |
144,119,466 (GRCm39) |
missense |
probably damaging |
1.00 |
R9711:Pramel13
|
UTSW |
4 |
144,122,517 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1187:Pramel13
|
UTSW |
4 |
144,122,517 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- GCACCATCTTCCTCAGGATG -3'
(R):5'- GGGTGGAAGCACAATACACTTC -3'
Sequencing Primer
(F):5'- GCACCATCTTCCTCAGGATGTTAAG -3'
(R):5'- GCTTCCTTGGAGCATATTTCAAG -3'
|
Posted On |
2015-09-24 |